Rw7G031880

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0004874
Physical Location & Seq
Reverse (-)
45891930 .. 45892842
913 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G031880.1

Sequence Viewer

Length: 699 bp
ATGAACCTAATTGGAACTTTAGATGAGTTAAAGGAAACTTCTAAGTACTTGAAATCCGAATTTGAGATGAAAGATCTTGGGAAAACACGGTTTTGCCTCGGATTAGAACTCGAGCACCAAAAAGATCCTTTTCGTCCAAGGGATGAGGACGAAGACCTATTAGAGGCAGAAGTGCCCTATCTAAGTGCAATAGGCGCATTATTGTACTTAGCTCAATGCACAAGACCGGATATCTCATTCGCAGTGAACTTGTTAGCTCGACATAGTTCTGCGCCAACACGCCGCCATTGGATTGGCATAAAGACAATCTTTCGATACGTGAGAGGGTATCTCTCTGACCCTCACAAAGGTCGCTCCCAAACGGGTTATGTCTTTACCATGGGAAGCACTGCGATATCTTGGAGGTCTACAAAGCAGACCCTTGTTGCCACTTCCTCAAATCATGCAGAGATTATTGCTCTACATGAAGCTGTGCGAGAATGCATATGGCTAAGGTCTGTAGTTAGACACATTCGAGGAACTTGTGGTTTGAAGTCTACCACAGATGAACCTACATGCATTTATGAAGATAATGCAGCTTGTATTGAGCAAATGAAGTTAGGTTTCATCAAGGGTGACAACACCAAGCATATATCGCCAAAGTTTTTTTACAATCAGCAACAACAGGCACTTCTAAATATTGAAGTGAACCAAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

232

Amino Acids

26.47

Weight (kDa)

7.66

Isoelectric Point (pI)

48.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 407, 536
AciI CCGC 1 cut(s) 283
AclWI GGATC 1 cut(s) 119
AcsI RAATTY 1 cut(s) 59
AfaI GTAC 2 cut(s) 47, 206
AfiI CCNNNNNNNGG 2 cut(s) 163, 347
AgsI TTSAA 3 cut(s) 52, 532, 683
AluBI AGCT 4 cut(s) 212, 257, 470, 578
AluI AGCT 4 cut(s) 212, 257, 470, 578
Alw21I GWGCWC 1 cut(s) 117
AlwI GGATC 1 cut(s) 119
Ama87I CYCGRG 1 cut(s) 110
ApeKI GCWGC 1 cut(s) 575
ApoI RAATTY 1 cut(s) 59
AspLEI GCGC 2 cut(s) 197, 274
AsuHPI GGTGA 1 cut(s) 626
AvaI CYCGRG 1 cut(s) 110
BaeGI GKGCMC 1 cut(s) 177
BbsI GAAGAC 1 cut(s) 159
Bbv12I GWGCWC 1 cut(s) 117
BbvI GCAGC 1 cut(s) 587
BfmI CTRYAG 1 cut(s) 498
BglII AGATCT 1 cut(s) 73
BisI GCNGC 2 cut(s) 283, 576
BlsI GCNGC 2 cut(s) 284, 577
BmcAI AGTACT 1 cut(s) 47
BmeT110I CYCGRG 1 cut(s) 110
BpiI GAAGAC 1 cut(s) 159
BplI GAGNNNNNCTC 2 cut(s) 315, 347
Bpu10I CCTNAGC 1 cut(s) 491
BsaAI YACGTR 1 cut(s) 319
BsaJI CCNNGG 3 cut(s) 97, 137, 378
BsaWI WCCGGW 1 cut(s) 226
Bsc4I CCNNNNNNNGG 2 cut(s) 163, 347
BseDI CCNNGG 3 cut(s) 97, 137, 378
BseGI GGATG 1 cut(s) 148
BseLI CCNNNNNNNGG 2 cut(s) 163, 347
BseSI GKGCMC 1 cut(s) 177
BseXI GCAGC 1 cut(s) 587
BsiHKAI GWGCWC 1 cut(s) 117
BsiHKCI CYCGRG 1 cut(s) 110
BsiSI CCGG 1 cut(s) 227
BslI CCNNNNNNNGG 2 cut(s) 163, 347
BsmI GAATGC 1 cut(s) 485
BsoBI CYCGRG 1 cut(s) 110
Bsp1286I GDGCHC 2 cut(s) 117, 177
Bsp143I GATC 2 cut(s) 73, 124
Bsp19I CCATGG 1 cut(s) 378
BspACI CCGC 1 cut(s) 283
BspPI GGATC 1 cut(s) 119
BssECI CCNNGG 3 cut(s) 97, 137, 378
BssMI GATC 2 cut(s) 73, 124
BssT1I CCWWGG 2 cut(s) 137, 378
Bst4CI ACNGT 1 cut(s) 90
BstBAI YACGTR 1 cut(s) 319
BstDEI CTNAG 4 cut(s) 42, 182, 208, 491
BstDSI CCRYGG 1 cut(s) 378
BstENI CCTNNNNNAGG 2 cut(s) 161, 345
BstF5I GGATG 1 cut(s) 148
BstHHI GCGC 2 cut(s) 197, 274
BstKTI GATC 2 cut(s) 76, 127
BstMBI GATC 2 cut(s) 73, 124
BstMWI GCNNNNNNNGC 2 cut(s) 194, 634
BstNSI RCATGY 1 cut(s) 558
BstSFI CTRYAG 1 cut(s) 498
BstSLI GKGCMC 1 cut(s) 177
BstV1I GCAGC 1 cut(s) 587
BstV2I GAAGAC 1 cut(s) 159
BstX2I RGATCY 2 cut(s) 73, 124
BstXI CCANNNNNNTGG 1 cut(s) 293
BstYI RGATCY 2 cut(s) 73, 124
BtgI CCRYGG 1 cut(s) 378
BtsCI GGATG 1 cut(s) 148
BtsI GCAGTG 2 cut(s) 249, 387
BtsIMutI CAGTG 2 cut(s) 249, 387
CfoI GCGC 2 cut(s) 197, 274
Csp6I GTAC 2 cut(s) 46, 205
CviAII CATG 4 cut(s) 379, 443, 464, 555
CviJI RGCY 5 cut(s) 212, 257, 470, 490, 578
CviKI_1 RGCY 5 cut(s) 212, 257, 470, 490, 578
CviQI GTAC 2 cut(s) 46, 205
DdeI CTNAG 4 cut(s) 42, 182, 208, 491
DpnI GATC 2 cut(s) 75, 126
DpnII GATC 2 cut(s) 73, 124
Eco130I CCWWGG 2 cut(s) 137, 378
Eco32I GATATC 2 cut(s) 232, 396
Eco88I CYCGRG 1 cut(s) 110
EcoNI CCTNNNNNAGG 2 cut(s) 161, 345
EcoRV GATATC 2 cut(s) 232, 396
EcoT14I CCWWGG 2 cut(s) 137, 378
EcoT22I ATGCAT 2 cut(s) 485, 560
ErhI CCWWGG 2 cut(s) 137, 378
FaeI CATG 4 cut(s) 382, 446, 467, 558
FalI AAGNNNNNCTT 2 cut(s) 293, 325
FatI CATG 4 cut(s) 378, 442, 463, 554
FauNDI CATATG 1 cut(s) 485
FblI GTMKAC 2 cut(s) 407, 536
Fnu4HI GCNGC 2 cut(s) 283, 576
FokI GGATG 1 cut(s) 155
Fsp4HI GCNGC 2 cut(s) 283, 576
GlaI GCGC 2 cut(s) 196, 273
GluI GCNGC 2 cut(s) 283, 576
HapII CCGG 1 cut(s) 227
HhaI GCGC 2 cut(s) 197, 274
Hin1II CATG 4 cut(s) 382, 446, 467, 558
Hin6I GCGC 2 cut(s) 195, 272
HinP1I GCGC 2 cut(s) 195, 272
HpaII CCGG 1 cut(s) 227
HphI GGTGA 1 cut(s) 626
Hpy166II GTNNAC 4 cut(s) 247, 408, 537, 688
Hpy188I TCNGA 4 cut(s) 58, 101, 337, 698
Hpy8I GTNNAC 4 cut(s) 247, 408, 537, 688
HpyCH4III ACNGT 1 cut(s) 90
HpyCH4IV ACGT 1 cut(s) 318
HpyCH4V TGCA 6 cut(s) 188, 219, 446, 483, 558, 575
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 634
HpyF3I CTNAG 4 cut(s) 42, 182, 208, 491
HpySE526I ACGT 1 cut(s) 318
Hsp92II CATG 4 cut(s) 382, 446, 467, 558
HspAI GCGC 2 cut(s) 195, 272
Kzo9I GATC 2 cut(s) 73, 124
LmnI GCTCC 1 cut(s) 359
LpnPI CCDG 2 cut(s) 240, 650
Lsp1109I GCAGC 1 cut(s) 587
MaeII ACGT 1 cut(s) 318
MaeIII GTNAC 1 cut(s) 614
MalI GATC 2 cut(s) 75, 126
MboI GATC 2 cut(s) 73, 124
MboII GAAGA 2 cut(s) 164, 578
MflI RGATCY 2 cut(s) 73, 124
MhlI GDGCHC 2 cut(s) 117, 177
MluCI AATT 2 cut(s) 9, 59
MnlI CCTC 8 cut(s) 107, 139, 157, 317, 351, 396, 445, 509
Mph1103I ATGCAT 2 cut(s) 485, 560
MseI TTAA 1 cut(s) 29
MspI CCGG 1 cut(s) 227
Mva1269I GAATGC 1 cut(s) 485
MwoI GCNNNNNNNGC 2 cut(s) 194, 634
NcoI CCATGG 1 cut(s) 378
NdeI CATATG 1 cut(s) 485
NdeII GATC 2 cut(s) 73, 124
NlaIII CATG 4 cut(s) 382, 446, 467, 558
NmuCI GTSAC 1 cut(s) 614
NsiI ATGCAT 2 cut(s) 485, 560
NspI RCATGY 1 cut(s) 558
PaeR7I CTCGAG 1 cut(s) 110
PctI GAATGC 1 cut(s) 485
PkrI GCNGC 2 cut(s) 284, 577
Ppu21I YACGTR 1 cut(s) 319
PspXI VCTCGAGB 1 cut(s) 110
PsuI RGATCY 2 cut(s) 73, 124
RsaI GTAC 2 cut(s) 47, 206
RsaNI GTAC 2 cut(s) 46, 205
SaqAI TTAA 1 cut(s) 29
SatI GCNGC 2 cut(s) 283, 576
Sau3AI GATC 2 cut(s) 73, 124
ScaI AGTACT 1 cut(s) 47
SduI GDGCHC 2 cut(s) 117, 177
SfcI CTRYAG 1 cut(s) 498
Sfr274I CTCGAG 1 cut(s) 110
SlaI CTCGAG 1 cut(s) 110
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 2 cut(s) 9, 59
SsiI CCGC 1 cut(s) 283
SspI AATATT 1 cut(s) 679
StyI CCWWGG 2 cut(s) 137, 378
TaaI ACNGT 1 cut(s) 90
TaiI ACGT 1 cut(s) 321
TaqI TCGA 4 cut(s) 111, 259, 313, 514
TasI AATT 2 cut(s) 9, 59
TatI WGTACW 2 cut(s) 45, 204
TauI GCSGC 1 cut(s) 285
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TscAI CASTG 2 cut(s) 249, 394
TseFI GTSAC 1 cut(s) 614
TseI GCWGC 1 cut(s) 575
Tsp45I GTSAC 1 cut(s) 614
TspDTI ATGAA 7 cut(s) 17, 83, 480, 561, 579, 595, 608
TspRI CASTG 2 cut(s) 249, 394
XagI CCTNNNNNAGG 2 cut(s) 161, 345
XapI RAATTY 1 cut(s) 59
XceI RCATGY 1 cut(s) 558
XhoI CTCGAG 1 cut(s) 110
XmiI GTMKAC 2 cut(s) 407, 536
ZrmI AGTACT 1 cut(s) 47
Zsp2I ATGCAT 2 cut(s) 485, 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.