transposition, RNA-mediated
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom13g24240 pycom520g00420 |
| rosa_chinensis | RchiOBHm_Chr1g0323091 RchiOBHm_Chr1g0367381 RchiOBHm_Chr2g0138291 RchiOBHm_Chr2g0148911 RchiOBHm_Chr2g0150891 RchiOBHm_Chr3g0491271 RchiOBHm_Chr4g0388351 RchiOBHm_Chr4g0435401 RchiOBHm_Chr5g0012171 RchiOBHm_Chr6g0282941 RchiOBHm_Chr7g0185711 RchiOBHm_Chr7g0186831 |
| rosa_multiflora | Rmu_sc0001998.1_g000012 |
| rosa_rugosa | Rorug07G0292400 |
| rosa_wichuraiana | Rw0G004540 Rw1G001620 Rw1G005040 Rw1G013360 Rw1G021570 Rw2G031870 Rw4G000690 Rw5G008320 Rw5G009260 Rw5G022080 Rw6G007050 Rw7G013470 Rw7G020380 Rw7G031880 Rw7G041220 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 345 |
| Acc65I | GGTACC | 1 cut(s) | 21 |
| AccB1I | GGYRCC | 1 cut(s) | 21 |
| AccI | GTMKAC | 2 cut(s) | 101, 230 |
| AciI | CCGC | 1 cut(s) | 410 |
| AfaI | GTAC | 2 cut(s) | 23, 168 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 41, 397 |
| AflIII | ACRYGT | 1 cut(s) | 454 |
| AgsI | TTSAA | 4 cut(s) | 209, 226, 281, 377 |
| AluBI | AGCT | 2 cut(s) | 164, 272 |
| AluI | AGCT | 2 cut(s) | 164, 272 |
| ApeKI | GCWGC | 1 cut(s) | 269 |
| Asp718I | GGTACC | 1 cut(s) | 21 |
| BanI | GGYRCC | 1 cut(s) | 21 |
| BbvI | GCAGC | 1 cut(s) | 281 |
| BisI | GCNGC | 1 cut(s) | 270 |
| BlsI | GCNGC | 1 cut(s) | 271 |
| BmiI | GGNNCC | 1 cut(s) | 23 |
| BmsI | GCATC | 2 cut(s) | 4, 474 |
| Bpu10I | CCTNAGC | 1 cut(s) | 185 |
| BsaAI | YACGTR | 1 cut(s) | 170 |
| BsaJI | CCNNGG | 1 cut(s) | 72 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 41, 397 |
| BseDI | CCNNGG | 1 cut(s) | 72 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 41, 397 |
| BseXI | GCAGC | 1 cut(s) | 281 |
| BshNI | GGYRCC | 1 cut(s) | 21 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 41, 397 |
| Bsp143I | GATC | 1 cut(s) | 392 |
| Bsp19I | CCATGG | 1 cut(s) | 72 |
| BspACI | CCGC | 1 cut(s) | 410 |
| BspLI | GGNNCC | 1 cut(s) | 23 |
| BspQI | GCTCTTC | 1 cut(s) | 455 |
| BspT107I | GGYRCC | 1 cut(s) | 21 |
| BssECI | CCNNGG | 1 cut(s) | 72 |
| BssMI | GATC | 1 cut(s) | 392 |
| BssT1I | CCWWGG | 1 cut(s) | 72 |
| Bst6I | CTCTTC | 1 cut(s) | 455 |
| BstBAI | YACGTR | 1 cut(s) | 170 |
| BstDEI | CTNAG | 3 cut(s) | 185, 333, 423 |
| BstDSI | CCRYGG | 1 cut(s) | 72 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 39 |
| BstKTI | GATC | 1 cut(s) | 395 |
| BstMBI | GATC | 1 cut(s) | 392 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 328 |
| BstNSI | RCATGY | 2 cut(s) | 252, 458 |
| BstV1I | GCAGC | 1 cut(s) | 281 |
| BtgI | CCRYGG | 1 cut(s) | 72 |
| BtsI | GCAGTG | 1 cut(s) | 81 |
| BtsIMutI | CAGTG | 1 cut(s) | 81 |
| Csp6I | GTAC | 2 cut(s) | 22, 167 |
| CviAII | CATG | 5 cut(s) | 73, 137, 158, 249, 455 |
| CviJI | RGCY | 3 cut(s) | 164, 184, 272 |
| CviKI_1 | RGCY | 3 cut(s) | 164, 184, 272 |
| CviQI | GTAC | 2 cut(s) | 22, 167 |
| DdeI | CTNAG | 3 cut(s) | 185, 333, 423 |
| DpnI | GATC | 1 cut(s) | 394 |
| DpnII | GATC | 1 cut(s) | 392 |
| Eam1104I | CTCTTC | 1 cut(s) | 455 |
| EarI | CTCTTC | 1 cut(s) | 455 |
| Eco130I | CCWWGG | 1 cut(s) | 72 |
| Eco32I | GATATC | 1 cut(s) | 90 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 39 |
| EcoRV | GATATC | 1 cut(s) | 90 |
| EcoT14I | CCWWGG | 1 cut(s) | 72 |
| EcoT22I | ATGCAT | 1 cut(s) | 254 |
| ErhI | CCWWGG | 1 cut(s) | 72 |
| FaeI | CATG | 5 cut(s) | 76, 140, 161, 252, 458 |
| FatI | CATG | 5 cut(s) | 72, 136, 157, 248, 454 |
| FblI | GTMKAC | 2 cut(s) | 101, 230 |
| Fnu4HI | GCNGC | 1 cut(s) | 270 |
| Fsp4HI | GCNGC | 1 cut(s) | 270 |
| GluI | GCNGC | 1 cut(s) | 270 |
| Hin1II | CATG | 5 cut(s) | 76, 140, 161, 252, 458 |
| HinfI | GANTC | 1 cut(s) | 382 |
| Hpy166II | GTNNAC | 2 cut(s) | 102, 231 |
| Hpy188I | TCNGA | 5 cut(s) | 31, 392, 397, 470, 487 |
| Hpy188III | TCNNGA | 1 cut(s) | 448 |
| Hpy8I | GTNNAC | 2 cut(s) | 102, 231 |
| HpyAV | CCTTC | 1 cut(s) | 454 |
| HpyCH4IV | ACGT | 1 cut(s) | 169 |
| HpyCH4V | TGCA | 4 cut(s) | 17, 140, 252, 269 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 328 |
| HpyF3I | CTNAG | 3 cut(s) | 185, 333, 423 |
| HpySE526I | ACGT | 1 cut(s) | 169 |
| Hsp92II | CATG | 5 cut(s) | 76, 140, 161, 252, 458 |
| KpnI | GGTACC | 1 cut(s) | 25 |
| Kzo9I | GATC | 1 cut(s) | 392 |
| LguI | GCTCTTC | 1 cut(s) | 455 |
| LmnI | GCTCC | 1 cut(s) | 53 |
| LpnPI | CCDG | 2 cut(s) | 3, 42 |
| Lsp1109I | GCAGC | 1 cut(s) | 281 |
| LweI | GCATC | 2 cut(s) | 4, 474 |
| MaeII | ACGT | 1 cut(s) | 169 |
| MaeIII | GTNAC | 1 cut(s) | 429 |
| MalI | GATC | 1 cut(s) | 394 |
| MboI | GATC | 1 cut(s) | 392 |
| MboII | GAAGA | 1 cut(s) | 472 |
| MluCI | AATT | 1 cut(s) | 195 |
| MnlI | CCTC | 6 cut(s) | 35, 45, 90, 139, 253, 391 |
| Mph1103I | ATGCAT | 1 cut(s) | 254 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 328 |
| NcoI | CCATGG | 1 cut(s) | 72 |
| NdeII | GATC | 1 cut(s) | 392 |
| NlaIII | CATG | 5 cut(s) | 76, 140, 161, 252, 458 |
| NlaIV | GGNNCC | 1 cut(s) | 23 |
| NsiI | ATGCAT | 1 cut(s) | 254 |
| NspI | RCATGY | 2 cut(s) | 252, 458 |
| PciI | ACATGT | 1 cut(s) | 454 |
| PciSI | GCTCTTC | 1 cut(s) | 455 |
| PfeI | GAWTC | 1 cut(s) | 382 |
| PkrI | GCNGC | 1 cut(s) | 271 |
| Ppu21I | YACGTR | 1 cut(s) | 170 |
| PscI | ACATGT | 1 cut(s) | 454 |
| PsiI | TTATAA | 1 cut(s) | 345 |
| PspN4I | GGNNCC | 1 cut(s) | 23 |
| RsaI | GTAC | 2 cut(s) | 23, 168 |
| RsaNI | GTAC | 2 cut(s) | 22, 167 |
| SapI | GCTCTTC | 1 cut(s) | 455 |
| SatI | GCNGC | 1 cut(s) | 270 |
| Sau3AI | GATC | 1 cut(s) | 392 |
| SfaNI | GCATC | 2 cut(s) | 4, 474 |
| Sse9I | AATT | 1 cut(s) | 195 |
| SsiI | CCGC | 1 cut(s) | 410 |
| StyI | CCWWGG | 1 cut(s) | 72 |
| TaiI | ACGT | 1 cut(s) | 172 |
| TaqI | TCGA | 2 cut(s) | 199, 447 |
| TasI | AATT | 1 cut(s) | 195 |
| TfiI | GAWTC | 1 cut(s) | 382 |
| TscAI | CASTG | 1 cut(s) | 88 |
| TseI | GCWGC | 1 cut(s) | 269 |
| TspDTI | ATGAA | 4 cut(s) | 174, 255, 289, 302 |
| TspRI | CASTG | 1 cut(s) | 88 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 39 |
| XceI | RCATGY | 2 cut(s) | 252, 458 |
| XmiI | GTMKAC | 2 cut(s) | 101, 230 |
| Zsp2I | ATGCAT | 1 cut(s) | 254 |