Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004874

Physical Location & Seq

Genomic Coordinates Reverse (-)

3562631 .. 3565742

Gene Structure 3112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36158

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGATTGGCCGTAATTTTGAGCCCGGAAAAGATATGTTTCGTCCAAAGGATGAGGACGAAAAATTATTAGAGGCTGAAGTGCCCTATTTAAGTGCAATAGGTGCATTATTGTACTTAGCTCAATGCACAAGACCCGATATCTCATTCGCAGTGAACTTGTTAGCTAGACATAGCTCTGCGCCAACACACCGACATTGGATTGATGTAAAGACAATTTTTCGATACCTAAGAGGTACGATTGATATGGGCCTATTTTATCCCTACAAAGAGAAGAGGAATAATGGAAAATTGGGATTGGACCCTAAGAGGCAAAACGCCACCATTCATGACCGCTGGCCATTTCAACGCCACTGGCACTGCCATTGTCCAAGGTGCCGGTGTCTTCCTCCTCCCCTCCATCAAAATGACAATGATGTTTTGATGGATCTTGCTGATGTAAGGTACCTCTCTAACCCTCACAAAGGTCGTTGCCAAACGGGTTATGTCTTTACCATGGGAAGCACTACGATATCTTTGAGGTCTACAAAACAGACCATTGTTGCTGCTTCCTCAAATCATGCAGAGATTATTGCTCTACATGAAGCCGTGCGTGAATGTATATGGCTAAGGTCTATAATTAGACATATTCGAGGAATTTATGGTTTGAAGTCTACCACGGATGTACCTATATGCATTTATGAGGATAATGTAGCGGACTTATTCACTAAATCATTACCAAAATTCACCTTCGAGAAACATGTGAAGAGCATCGGATTGGGAAAGTTATCCAAACTCCCACGATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

261

Amino Acids

30.02

Weight (kDa)

9.4

Isoelectric Point (pI)

39.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004874)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g24240 pycom520g00420
rosa_chinensis	RchiOBHm_Chr1g0323091 RchiOBHm_Chr1g0367381 RchiOBHm_Chr2g0138291 RchiOBHm_Chr2g0148911 RchiOBHm_Chr2g0150891 RchiOBHm_Chr3g0491271 RchiOBHm_Chr4g0388351 RchiOBHm_Chr4g0435401 RchiOBHm_Chr5g0012171 RchiOBHm_Chr6g0282941 RchiOBHm_Chr7g0185711 RchiOBHm_Chr7g0186831
rosa_multiflora	Rmu_sc0001998.1_g000012
rosa_rugosa	Rorug07G0292400
rosa_wichuraiana	Rw0G004540 Rw1G001620 Rw1G005040 Rw1G013360 Rw1G021570 Rw2G031870 Rw4G000690 Rw5G008320 Rw5G009260 Rw5G022080 Rw6G007050 Rw7G013470 Rw7G020380 Rw7G031880 Rw7G041220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	441
AccB1I	GGYRCC	2 cut(s)	372, 441
AccI	GTMKAC	2 cut(s)	521, 650
AciI	CCGC	2 cut(s)	331, 692
AclWI	GGATC	1 cut(s)	432
AcoI	YGGCCR	2 cut(s)	7, 335
AcsI	RAATTY	2 cut(s)	633, 719
AcuI	CTGAAG	1 cut(s)	96
AfaI	GTAC	4 cut(s)	113, 235, 443, 663
AfiI	CCNNNNNNNGG	1 cut(s)	461
AflIII	ACRYGT	1 cut(s)	736
AgsI	TTSAA	2 cut(s)	344, 646
AluBI	AGCT	3 cut(s)	119, 164, 174
AluI	AGCT	3 cut(s)	119, 164, 174
AlwI	GGATC	1 cut(s)	432
AoxI	GGCC	3 cut(s)	7, 247, 335
ApeKI	GCWGC	1 cut(s)	542
ApoI	RAATTY	2 cut(s)	633, 719
Asp718I	GGTACC	1 cut(s)	441
AspLEI	GCGC	1 cut(s)	181
AspS9I	GGNCC	2 cut(s)	247, 298
AsuC2I	CCSGG	1 cut(s)	24
AsuHPI	GGTGA	1 cut(s)	715
AvaII	GGWCC	1 cut(s)	298
BaeGI	GKGCMC	1 cut(s)	84
BaeI	ACNNNNGTAYC	2 cut(s)	645, 678
BalI	TGGCCA	1 cut(s)	337
BanI	GGYRCC	2 cut(s)	372, 441
BanII	GRGCYC	1 cut(s)	24
BbsI	GAAGAC	1 cut(s)	374
BbvI	GCAGC	1 cut(s)	529
BccI	CCATC	2 cut(s)	405, 415
BceAI	ACGGC	1 cut(s)	569
BcnI	CCSGG	1 cut(s)	24
BfaI	CTAG	1 cut(s)	165
BisI	GCNGC	1 cut(s)	543
BlsI	GCNGC	1 cut(s)	544
Bme1390I	CCNGG	1 cut(s)	24
Bme18I	GGWCC	1 cut(s)	298
BmgT120I	GGNCC	2 cut(s)	247, 298
BmiI	GGNNCC	3 cut(s)	300, 374, 443
BmrFI	CCNGG	1 cut(s)	24
BmsI	GCATC	1 cut(s)	756
BpiI	GAAGAC	1 cut(s)	374
Bpu10I	CCTNAGC	1 cut(s)	605
BpuMI	CCSGG	1 cut(s)	24
BsaJI	CCNNGG	3 cut(s)	368, 492, 654
Bsc4I	CCNNNNNNNGG	1 cut(s)	461
Bse118I	RCCGGY	1 cut(s)	375
Bse1I	ACTGG	1 cut(s)	356
BseDI	CCNNGG	3 cut(s)	368, 492, 654
BseGI	GGATG	2 cut(s)	55, 664
BseLI	CCNNNNNNNGG	1 cut(s)	461
BseNI	ACTGG	1 cut(s)	356
BseRI	GAGGAG	1 cut(s)	378
BseSI	GKGCMC	1 cut(s)	84
BseXI	GCAGC	1 cut(s)	529
BshFI	GGCC	3 cut(s)	9, 249, 337
BshNI	GGYRCC	2 cut(s)	372, 441
BsiSI	CCGG	2 cut(s)	24, 376
BslI	CCNNNNNNNGG	1 cut(s)	461
BsnI	GGCC	3 cut(s)	9, 249, 337
Bsp1286I	GDGCHC	2 cut(s)	24, 84
Bsp143I	GATC	1 cut(s)	424
Bsp19I	CCATGG	1 cut(s)	492
BspACI	CCGC	2 cut(s)	331, 692
BspANI	GGCC	3 cut(s)	9, 249, 337
BspHI	TCATGA	1 cut(s)	325
BspLI	GGNNCC	3 cut(s)	300, 374, 443
BspPI	GGATC	1 cut(s)	432
BspQI	GCTCTTC	1 cut(s)	737
BspT107I	GGYRCC	2 cut(s)	372, 441
BsrFI	RCCGGY	1 cut(s)	375
BsrI	ACTGG	1 cut(s)	356
BssAI	RCCGGY	1 cut(s)	375
BssECI	CCNNGG	3 cut(s)	368, 492, 654
BssMI	GATC	1 cut(s)	424
BssT1I	CCWWGG	2 cut(s)	368, 492
Bst6I	CTCTTC	2 cut(s)	266, 737
BstAPI	GCANNNNNTGC	1 cut(s)	101
BstC8I	GCNNGC	1 cut(s)	335
BstDEI	CTNAG	4 cut(s)	115, 227, 303, 605
BstDSI	CCRYGG	2 cut(s)	492, 654
BstENI	CCTNNNNNAGG	1 cut(s)	459
BstF5I	GGATG	2 cut(s)	55, 664
BstHHI	GCGC	1 cut(s)	181
BstKTI	GATC	1 cut(s)	427
BstMBI	GATC	1 cut(s)	424
BstMWI	GCNNNNNNNGC	1 cut(s)	101
BstNSI	RCATGY	1 cut(s)	740
BstSCI	CCNGG	1 cut(s)	22
BstSLI	GKGCMC	1 cut(s)	84
BstV1I	GCAGC	1 cut(s)	529
BstV2I	GAAGAC	1 cut(s)	374
BstX2I	RGATCY	1 cut(s)	424
BstYI	RGATCY	1 cut(s)	424
BsuRI	GGCC	3 cut(s)	9, 249, 337
BtgI	CCRYGG	2 cut(s)	492, 654
BtsCI	GGATG	2 cut(s)	55, 664
BtsI	GCAGTG	2 cut(s)	156, 355
BtsIMutI	CAGTG	3 cut(s)	156, 349, 355
Cac8I	GCNNGC	1 cut(s)	335
CciI	TCATGA	1 cut(s)	325
CfoI	GCGC	1 cut(s)	181
Cfr10I	RCCGGY	1 cut(s)	375
Cfr13I	GGNCC	2 cut(s)	247, 298
Csp6I	GTAC	4 cut(s)	112, 234, 442, 662
CviAII	CATG	5 cut(s)	326, 493, 557, 578, 737
CviQI	GTAC	4 cut(s)	112, 234, 442, 662
DdeI	CTNAG	4 cut(s)	115, 227, 303, 605
DpnI	GATC	1 cut(s)	426
DpnII	GATC	1 cut(s)	424
EaeI	YGGCCR	2 cut(s)	7, 335
Eam1104I	CTCTTC	2 cut(s)	266, 737
EarI	CTCTTC	2 cut(s)	266, 737
Eco130I	CCWWGG	2 cut(s)	368, 492
Eco24I	GRGCYC	1 cut(s)	24
Eco32I	GATATC	2 cut(s)	139, 510
Eco47I	GGWCC	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	96
EcoNI	CCTNNNNNAGG	1 cut(s)	459
EcoRV	GATATC	2 cut(s)	139, 510
EcoT14I	CCWWGG	2 cut(s)	368, 492
EcoT22I	ATGCAT	1 cut(s)	674
EcoT38I	GRGCYC	1 cut(s)	24
ErhI	CCWWGG	2 cut(s)	368, 492
FaeI	CATG	5 cut(s)	329, 496, 560, 581, 740
FatI	CATG	5 cut(s)	325, 492, 556, 577, 736
FblI	GTMKAC	2 cut(s)	521, 650
Fnu4HI	GCNGC	1 cut(s)	543
FokI	GGATG	2 cut(s)	62, 671
FriOI	GRGCYC	1 cut(s)	24
Fsp4HI	GCNGC	1 cut(s)	543
FspBI	CTAG	1 cut(s)	165
GlaI	GCGC	1 cut(s)	180
GluI	GCNGC	1 cut(s)	543
HaeIII	GGCC	3 cut(s)	9, 249, 337
HapII	CCGG	2 cut(s)	24, 376
HhaI	GCGC	1 cut(s)	181
Hin1II	CATG	5 cut(s)	329, 496, 560, 581, 740
Hin6I	GCGC	1 cut(s)	179
HinP1I	GCGC	1 cut(s)	179
HpaII	CCGG	2 cut(s)	24, 376
HphI	GGTGA	1 cut(s)	715
Hpy166II	GTNNAC	3 cut(s)	154, 522, 651
Hpy188I	TCNGA	1 cut(s)	752
Hpy188III	TCNNGA	2 cut(s)	326, 730
Hpy8I	GTNNAC	3 cut(s)	154, 522, 651
HpyAV	CCTTC	1 cut(s)	736
HpyCH4V	TGCA	5 cut(s)	95, 104, 126, 560, 672
HpyF10VI	GCNNNNNNNGC	1 cut(s)	101
HpyF3I	CTNAG	4 cut(s)	115, 227, 303, 605
Hsp92II	CATG	5 cut(s)	329, 496, 560, 581, 740
HspAI	GCGC	1 cut(s)	179
KpnI	GGTACC	1 cut(s)	445
Kzo9I	GATC	1 cut(s)	424
LguI	GCTCTTC	1 cut(s)	737
LpnPI	CCDG	4 cut(s)	37, 319, 337, 389
Lsp1109I	GCAGC	1 cut(s)	529
LweI	GCATC	1 cut(s)	756
MaeI	CTAG	1 cut(s)	165
MalI	GATC	1 cut(s)	426
MboI	GATC	1 cut(s)	424
MboII	GAAGA	3 cut(s)	283, 374, 754
MflI	RGATCY	1 cut(s)	424
MhlI	GDGCHC	2 cut(s)	24, 84
MlsI	TGGCCA	1 cut(s)	337
MluCI	AATT	7 cut(s)	13, 62, 213, 287, 615, 633, 719
MluNI	TGGCCA	1 cut(s)	337
Mox20I	TGGCCA	1 cut(s)	337
Mph1103I	ATGCAT	1 cut(s)	674
MscI	TGGCCA	1 cut(s)	337
MseI	TTAA	1 cut(s)	89
MslI	CAYNNNNRTG	1 cut(s)	402
Msp20I	TGGCCA	1 cut(s)	337
MspA1I	CMGCKG	1 cut(s)	333
MspI	CCGG	2 cut(s)	24, 376
MspR9I	CCNGG	1 cut(s)	24
MwoI	GCNNNNNNNGC	1 cut(s)	101
NciI	CCSGG	1 cut(s)	24
NcoI	CCATGG	1 cut(s)	492
NdeII	GATC	1 cut(s)	424
NlaIII	CATG	5 cut(s)	329, 496, 560, 581, 740
NlaIV	GGNNCC	3 cut(s)	300, 374, 443
NsiI	ATGCAT	1 cut(s)	674
NspI	RCATGY	1 cut(s)	740
PagI	TCATGA	1 cut(s)	325
PciI	ACATGT	1 cut(s)	736
PciSI	GCTCTTC	1 cut(s)	737
PkrI	GCNGC	1 cut(s)	544
PscI	ACATGT	1 cut(s)	736
PspN4I	GGNNCC	3 cut(s)	300, 374, 443
PspPI	GGNCC	2 cut(s)	247, 298
PsuI	RGATCY	1 cut(s)	424
RsaI	GTAC	4 cut(s)	113, 235, 443, 663
RsaNI	GTAC	4 cut(s)	112, 234, 442, 662
RseI	CAYNNNNRTG	1 cut(s)	402
SapI	GCTCTTC	1 cut(s)	737
SaqAI	TTAA	1 cut(s)	89
SatI	GCNGC	1 cut(s)	543
Sau3AI	GATC	1 cut(s)	424
Sau96I	GGNCC	2 cut(s)	247, 298
ScrFI	CCNGG	1 cut(s)	24
SduI	GDGCHC	2 cut(s)	24, 84
SfaNI	GCATC	1 cut(s)	756
SinI	GGWCC	1 cut(s)	298
SmiMI	CAYNNNNRTG	1 cut(s)	402
Sse9I	AATT	7 cut(s)	13, 62, 213, 287, 615, 633, 719
SsiI	CCGC	2 cut(s)	331, 692
SspMI	CTAG	1 cut(s)	165
StyD4I	CCNGG	1 cut(s)	22
StyI	CCWWGG	2 cut(s)	368, 492
TaqI	TCGA	3 cut(s)	220, 628, 729
TasI	AATT	7 cut(s)	13, 62, 213, 287, 615, 633, 719
TatI	WGTACW	1 cut(s)	111
Tru1I	TTAA	1 cut(s)	89
Tru9I	TTAA	1 cut(s)	89
TscAI	CASTG	3 cut(s)	156, 356, 362
TseI	GCWGC	1 cut(s)	542
TspDTI	ATGAA	2 cut(s)	314, 594
TspGWI	ACGGA	1 cut(s)	671
TspRI	CASTG	3 cut(s)	156, 356, 362
VpaK11BI	GGWCC	1 cut(s)	298
XagI	CCTNNNNNAGG	1 cut(s)	459
XapI	RAATTY	2 cut(s)	633, 719
XceI	RCATGY	1 cut(s)	740
XmiI	GTMKAC	2 cut(s)	521, 650
XspI	CTAG	1 cut(s)	165
Zsp2I	ATGCAT	1 cut(s)	674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.