transposition, RNA-mediated
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom13g24240 pycom520g00420 |
| rosa_chinensis | RchiOBHm_Chr1g0323091 RchiOBHm_Chr1g0367381 RchiOBHm_Chr2g0138291 RchiOBHm_Chr2g0148911 RchiOBHm_Chr2g0150891 RchiOBHm_Chr3g0491271 RchiOBHm_Chr4g0388351 RchiOBHm_Chr4g0435401 RchiOBHm_Chr5g0012171 RchiOBHm_Chr6g0282941 RchiOBHm_Chr7g0185711 RchiOBHm_Chr7g0186831 |
| rosa_multiflora | Rmu_sc0001998.1_g000012 |
| rosa_rugosa | Rorug07G0292400 |
| rosa_wichuraiana | Rw0G004540 Rw1G001620 Rw1G005040 Rw1G013360 Rw1G021570 Rw2G031870 Rw4G000690 Rw5G008320 Rw5G009260 Rw5G022080 Rw6G007050 Rw7G013470 Rw7G020380 Rw7G031880 Rw7G041220 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AflIII | ACRYGT | 1 cut(s) | 169 |
| AgsI | TTSAA | 1 cut(s) | 92 |
| AluBI | AGCT | 2 cut(s) | 7, 205 |
| AluI | AGCT | 2 cut(s) | 7, 205 |
| AseI | ATTAAT | 1 cut(s) | 215 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 196 |
| AsuHPI | GGTGA | 2 cut(s) | 35, 127 |
| AxyI | CCTNAGG | 1 cut(s) | 150 |
| BbsI | GAAGAC | 1 cut(s) | 199 |
| BfaI | CTAG | 2 cut(s) | 8, 210 |
| BpiI | GAAGAC | 1 cut(s) | 199 |
| BpuEI | CTTGAG | 1 cut(s) | 68 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 63, 93 |
| Bse21I | CCTNAGG | 1 cut(s) | 150 |
| Bse3DI | GCAATG | 1 cut(s) | 143 |
| BseMI | GCAATG | 1 cut(s) | 143 |
| BseMII | CTCAG | 1 cut(s) | 102 |
| BseRI | GAGGAG | 2 cut(s) | 71, 128 |
| BsmI | GAATGC | 1 cut(s) | 192 |
| BspCNI | CTCAG | 1 cut(s) | 103 |
| BsrDI | GCAATG | 1 cut(s) | 143 |
| BstDEI | CTNAG | 2 cut(s) | 111, 150 |
| BstNSI | RCATGY | 1 cut(s) | 173 |
| BstV2I | GAAGAC | 1 cut(s) | 199 |
| Bsu36I | CCTNAGG | 1 cut(s) | 150 |
| CviAII | CATG | 1 cut(s) | 170 |
| CviJI | RGCY | 2 cut(s) | 7, 205 |
| CviKI_1 | RGCY | 2 cut(s) | 7, 205 |
| DdeI | CTNAG | 2 cut(s) | 111, 150 |
| Eco81I | CCTNAGG | 1 cut(s) | 150 |
| FaeI | CATG | 1 cut(s) | 173 |
| FaiI | YATR | 4 cut(s) | 15, 41, 171, 182 |
| FatI | CATG | 1 cut(s) | 169 |
| FspBI | CTAG | 2 cut(s) | 8, 210 |
| Hin1II | CATG | 1 cut(s) | 173 |
| HinfI | GANTC | 3 cut(s) | 76, 88, 97 |
| HphI | GGTGA | 2 cut(s) | 35, 127 |
| Hpy166II | GTNNAC | 1 cut(s) | 135 |
| Hpy188I | TCNGA | 1 cut(s) | 112 |
| Hpy188III | TCNNGA | 1 cut(s) | 85 |
| Hpy8I | GTNNAC | 1 cut(s) | 135 |
| HpyF3I | CTNAG | 2 cut(s) | 111, 150 |
| Hsp92II | CATG | 1 cut(s) | 173 |
| LmnI | GCTCC | 1 cut(s) | 210 |
| MaeI | CTAG | 2 cut(s) | 8, 210 |
| MboII | GAAGA | 1 cut(s) | 204 |
| MlyI | GAGTC | 1 cut(s) | 70 |
| MnlI | CCTC | 2 cut(s) | 92, 106 |
| MroXI | GAANNNNTTC | 1 cut(s) | 196 |
| MseI | TTAA | 2 cut(s) | 18, 215 |
| MslI | CAYNNNNRTG | 1 cut(s) | 185 |
| Mva1269I | GAATGC | 1 cut(s) | 192 |
| NlaIII | CATG | 1 cut(s) | 173 |
| NspI | RCATGY | 1 cut(s) | 173 |
| PciI | ACATGT | 1 cut(s) | 169 |
| PctI | GAATGC | 1 cut(s) | 192 |
| PdmI | GAANNNNTTC | 1 cut(s) | 196 |
| PfeI | GAWTC | 2 cut(s) | 88, 97 |
| PleI | GAGTC | 1 cut(s) | 70 |
| PpsI | GAGTC | 1 cut(s) | 70 |
| PscI | ACATGT | 1 cut(s) | 169 |
| PshBI | ATTAAT | 1 cut(s) | 215 |
| RseI | CAYNNNNRTG | 1 cut(s) | 185 |
| SaqAI | TTAA | 2 cut(s) | 18, 215 |
| SchI | GAGTC | 1 cut(s) | 70 |
| SetI | ASST | 4 cut(s) | 9, 13, 110, 207 |
| SgeI | CNNG | 5 cut(s) | 20, 97, 113, 182, 214 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 185 |
| SmlI | CTYRAG | 1 cut(s) | 83 |
| SmoI | CTYRAG | 1 cut(s) | 83 |
| SspMI | CTAG | 2 cut(s) | 8, 210 |
| TfiI | GAWTC | 2 cut(s) | 88, 97 |
| Tru1I | TTAA | 2 cut(s) | 18, 215 |
| Tru9I | TTAA | 2 cut(s) | 18, 215 |
| TspDTI | ATGAA | 2 cut(s) | 17, 110 |
| VspI | ATTAAT | 1 cut(s) | 215 |
| XceI | RCATGY | 1 cut(s) | 173 |
| XmnI | GAANNNNTTC | 1 cut(s) | 196 |
| XspI | CTAG | 2 cut(s) | 8, 210 |