transposition, RNA-mediated
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom13g24240 pycom520g00420 |
| rosa_chinensis | RchiOBHm_Chr1g0323091 RchiOBHm_Chr1g0367381 RchiOBHm_Chr2g0138291 RchiOBHm_Chr2g0148911 RchiOBHm_Chr2g0150891 RchiOBHm_Chr3g0491271 RchiOBHm_Chr4g0388351 RchiOBHm_Chr4g0435401 RchiOBHm_Chr5g0012171 RchiOBHm_Chr6g0282941 RchiOBHm_Chr7g0185711 RchiOBHm_Chr7g0186831 |
| rosa_multiflora | Rmu_sc0001998.1_g000012 |
| rosa_rugosa | Rorug07G0292400 |
| rosa_wichuraiana | Rw0G004540 Rw1G001620 Rw1G005040 Rw1G013360 Rw1G021570 Rw2G031870 Rw4G000690 Rw5G008320 Rw5G009260 Rw5G022080 Rw6G007050 Rw7G013470 Rw7G020380 Rw7G031880 Rw7G041220 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 195 |
| AcsI | RAATTY | 1 cut(s) | 195 |
| AcuI | CTGAAG | 1 cut(s) | 21 |
| AfaI | GTAC | 1 cut(s) | 250 |
| AflIII | ACRYGT | 1 cut(s) | 358 |
| AgsI | TTSAA | 1 cut(s) | 167 |
| AluBI | AGCT | 2 cut(s) | 163, 298 |
| AluI | AGCT | 2 cut(s) | 163, 298 |
| Alw26I | GTCTC | 1 cut(s) | 277 |
| AlwI | GGATC | 1 cut(s) | 195 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 44 |
| ApoI | RAATTY | 1 cut(s) | 195 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 42, 74 |
| AsuHPI | GGTGA | 2 cut(s) | 128, 220 |
| AsuII | TTCGAA | 1 cut(s) | 16 |
| BbsI | GAAGAC | 1 cut(s) | 75 |
| BcoDI | GTCTC | 1 cut(s) | 277 |
| BfaI | CTAG | 1 cut(s) | 367 |
| BmsI | GCATC | 1 cut(s) | 357 |
| BpiI | GAAGAC | 1 cut(s) | 75 |
| Bpu14I | TTCGAA | 1 cut(s) | 16 |
| BsaBI | GATNNNNATC | 1 cut(s) | 335 |
| Bse8I | GATNNNNATC | 1 cut(s) | 335 |
| BseJI | GATNNNNATC | 1 cut(s) | 335 |
| BseMII | CTCAG | 1 cut(s) | 104 |
| BsmAI | GTCTC | 1 cut(s) | 277 |
| Bsp119I | TTCGAA | 1 cut(s) | 16 |
| Bsp143I | GATC | 2 cut(s) | 200, 273 |
| BspCNI | CTCAG | 1 cut(s) | 103 |
| BspHI | TCATGA | 1 cut(s) | 157 |
| BspPI | GGATC | 1 cut(s) | 195 |
| BspT104I | TTCGAA | 1 cut(s) | 16 |
| BssMI | GATC | 2 cut(s) | 200, 273 |
| Bst4CI | ACNGT | 1 cut(s) | 58 |
| Bst6I | CTCTTC | 1 cut(s) | 264 |
| BstBI | TTCGAA | 1 cut(s) | 16 |
| BstC8I | GCNNGC | 1 cut(s) | 313 |
| BstDEI | CTNAG | 3 cut(s) | 90, 126, 243 |
| BstKTI | GATC | 2 cut(s) | 203, 276 |
| BstMAI | GTCTC | 1 cut(s) | 277 |
| BstMBI | GATC | 2 cut(s) | 200, 273 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 86, 312 |
| BstNSI | RCATGY | 2 cut(s) | 315, 362 |
| BstV2I | GAAGAC | 1 cut(s) | 75 |
| BtsI | GCAGTG | 1 cut(s) | 192 |
| BtsIMutI | CAGTG | 1 cut(s) | 192 |
| Cac8I | GCNNGC | 1 cut(s) | 313 |
| CaiI | CAGNNNCTG | 1 cut(s) | 44 |
| CciI | TCATGA | 1 cut(s) | 157 |
| CseI | GACGC | 1 cut(s) | 317 |
| Csp6I | GTAC | 1 cut(s) | 249 |
| CviAII | CATG | 4 cut(s) | 61, 158, 312, 359 |
| CviJI | RGCY | 3 cut(s) | 163, 218, 298 |
| CviKI_1 | RGCY | 3 cut(s) | 163, 218, 298 |
| CviQI | GTAC | 1 cut(s) | 249 |
| DdeI | CTNAG | 3 cut(s) | 90, 126, 243 |
| DpnI | GATC | 2 cut(s) | 202, 275 |
| DpnII | GATC | 2 cut(s) | 200, 273 |
| Eam1104I | CTCTTC | 1 cut(s) | 264 |
| EarI | CTCTTC | 1 cut(s) | 264 |
| Eco57I | CTGAAG | 1 cut(s) | 21 |
| FaeI | CATG | 4 cut(s) | 64, 161, 315, 362 |
| FaiI | YATR | 6 cut(s) | 62, 66, 132, 159, 313, 360 |
| FatI | CATG | 4 cut(s) | 60, 157, 311, 358 |
| FspBI | CTAG | 1 cut(s) | 367 |
| HgaI | GACGC | 1 cut(s) | 317 |
| Hin1II | CATG | 4 cut(s) | 64, 161, 315, 362 |
| HinfI | GANTC | 3 cut(s) | 4, 105, 172 |
| HphI | GGTGA | 2 cut(s) | 128, 220 |
| Hpy166II | GTNNAC | 1 cut(s) | 249 |
| Hpy188I | TCNGA | 3 cut(s) | 93, 205, 278 |
| Hpy188III | TCNNGA | 4 cut(s) | 158, 176, 292, 352 |
| Hpy8I | GTNNAC | 1 cut(s) | 249 |
| Hpy99I | CGWCG | 2 cut(s) | 209, 311 |
| HpyAV | CCTTC | 2 cut(s) | 45, 95 |
| HpyCH4III | ACNGT | 1 cut(s) | 58 |
| HpyCH4V | TGCA | 3 cut(s) | 185, 315, 335 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 86, 312 |
| HpyF3I | CTNAG | 3 cut(s) | 90, 126, 243 |
| Hsp92II | CATG | 4 cut(s) | 64, 161, 315, 362 |
| Kzo9I | GATC | 2 cut(s) | 200, 273 |
| LmnI | GCTCC | 1 cut(s) | 345 |
| LpnPI | CCDG | 1 cut(s) | 37 |
| LweI | GCATC | 1 cut(s) | 357 |
| MaeI | CTAG | 1 cut(s) | 367 |
| MaeIII | GTNAC | 3 cut(s) | 40, 116, 361 |
| MalI | GATC | 2 cut(s) | 202, 275 |
| MboI | GATC | 2 cut(s) | 200, 273 |
| MboII | GAAGA | 2 cut(s) | 80, 281 |
| MluCI | AATT | 2 cut(s) | 180, 195 |
| MmeI | TCCRAC | 1 cut(s) | 228 |
| MseI | TTAA | 1 cut(s) | 96 |
| MslI | CAYNNNNRTG | 1 cut(s) | 156 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 86, 312 |
| NdeII | GATC | 2 cut(s) | 200, 273 |
| NlaIII | CATG | 4 cut(s) | 64, 161, 315, 362 |
| NmuCI | GTSAC | 1 cut(s) | 116 |
| NspI | RCATGY | 2 cut(s) | 315, 362 |
| NspV | TTCGAA | 1 cut(s) | 16 |
| PaeI | GCATGC | 1 cut(s) | 315 |
| PagI | TCATGA | 1 cut(s) | 157 |
| PciI | ACATGT | 1 cut(s) | 358 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 13 |
| PfeI | GAWTC | 3 cut(s) | 4, 105, 172 |
| PscI | ACATGT | 1 cut(s) | 358 |
| PstNI | CAGNNNCTG | 1 cut(s) | 44 |
| RsaI | GTAC | 1 cut(s) | 250 |
| RsaNI | GTAC | 1 cut(s) | 249 |
| RseI | CAYNNNNRTG | 1 cut(s) | 156 |
| SaqAI | TTAA | 1 cut(s) | 96 |
| Sau3AI | GATC | 2 cut(s) | 200, 273 |
| SetI | ASST | 7 cut(s) | 26, 37, 118, 165, 244, 300, 368 |
| SfaNI | GCATC | 1 cut(s) | 357 |
| SfuI | TTCGAA | 1 cut(s) | 16 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 156 |
| SphI | GCATGC | 1 cut(s) | 315 |
| Sse9I | AATT | 2 cut(s) | 180, 195 |
| SspMI | CTAG | 1 cut(s) | 367 |
| TaaI | ACNGT | 1 cut(s) | 58 |
| TaqI | TCGA | 3 cut(s) | 16, 199, 293 |
| TasI | AATT | 2 cut(s) | 180, 195 |
| TatI | WGTACW | 1 cut(s) | 248 |
| TfiI | GAWTC | 3 cut(s) | 4, 105, 172 |
| Tru1I | TTAA | 1 cut(s) | 96 |
| Tru9I | TTAA | 1 cut(s) | 96 |
| TscAI | CASTG | 1 cut(s) | 192 |
| TseFI | GTSAC | 1 cut(s) | 116 |
| Tsp45I | GTSAC | 1 cut(s) | 116 |
| TspDTI | ATGAA | 2 cut(s) | 81, 97 |
| TspRI | CASTG | 1 cut(s) | 192 |
| XapI | RAATTY | 1 cut(s) | 195 |
| XceI | RCATGY | 2 cut(s) | 315, 362 |
| XspI | CTAG | 1 cut(s) | 367 |