RchiOBHm_Chr2g0138291

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0004874
Physical Location & Seq
Forward (+)
56030294 .. 56031860
1567 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50898

Sequence Viewer

Length: 1002 bp
ATGAAAGATCTTGGGAAAACACGGTTTTGCCTCGGTTTAGAACTTGAGCACCGTAGAGATGGTATCCTGATTCATCAATCAGCTTATACCCAAAAGATGCTTAGGCGTTTCAACACTGACAAAATTAAGCCTTCAAGCACCCCAATGGTCGTCCGTAGTCTTGATCCAAAGAAGGATCCATTTCGTCCAAAAGATGACGATGAAGAAGTGCTAGAGGCAGAAGTGCCCTACCTAAGTGCAATAGGTGCATTATTGTACTTAGCACAATGCACGAGACCAGACATCTCATTCGCTGTGAACTTGCTAGCTAGATATAGCTCTGCGCCAACACGACGCCATTGGACTGGTGTTAAAGATATCTTTCGATACCTAAGTAGTACGATCGATATGGGCTTGTTCTATCCCTACAGAAAGAAGATGGATTCGGACCCATCAAATGTCAGGAACGCCACACATAGTGGATTGCGTTCCCTCTCCCCATCCCAAAACGATATAAGTGTTTTGGAAGGTTTTGCTGATGCTGGGTACCTCTCTGACCCACACAAAGGTCGCTCCCAAACTGGTTATGTTTTCACCATGGGAAAAACCGCGATATCTTGGAGGTCTACAAAGCAGACCCTAGTCGCTACCTCTTCAAATCATGCAGAGATTATTGCTCTTCACGAAGCAGTTCGTGAATGTATATGGCTTCGATCCATAGTTACGCATGTTCGAAGCAATTGTGGTTTGAAGTCTACCACAGATGAGCCAACGAGCATTTATGAAGATAATGCTGCTTGCATTGAACAAATGAAGCAAGGTTACATCAAAGGCGACAACACCAAGCACATATCGCCCAAATTCTTCTACAATCAGCAACAACAGAAGCTCCTCAAGATCAAGGTGAACCAGGTTCGATCTGAGGACAATGTGGCAGACTTGTTCACTAAGTCATTGCCCAAATCCACGTTCGAGAAACATGTGGCAAGAATTGGCTTGCGGAAATTATCTGAACTCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

333

Amino Acids

37.79

Weight (kDa)

9.38

Isoelectric Point (pI)

51.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 525
AccB1I GGYRCC 1 cut(s) 525
AccI GTMKAC 2 cut(s) 605, 734
AccII CGCG 1 cut(s) 590
AciI CCGC 2 cut(s) 588, 979
AclWI GGATC 4 cut(s) 158, 170, 183, 687
AcsI RAATTY 1 cut(s) 839
AcyI GRCGYC 1 cut(s) 334
AdeI CACNNNGTG 1 cut(s) 458
AfaI GTAC 3 cut(s) 257, 379, 527
AfiI CCNNNNNNNGG 1 cut(s) 545
AflIII ACRYGT 1 cut(s) 958
AgsI TTSAA 5 cut(s) 112, 135, 636, 730, 785
AjnI CCWGG 1 cut(s) 888
AjuI GAANNNNNNNTTGG 2 cut(s) 932, 964
AluBI AGCT 4 cut(s) 83, 308, 318, 868
AluI AGCT 4 cut(s) 83, 308, 318, 868
Alw21I GWGCWC 1 cut(s) 51
Alw26I GTCTC 1 cut(s) 268
AlwI GGATC 4 cut(s) 158, 170, 183, 687
ApeKI GCWGC 1 cut(s) 773
ApoI RAATTY 1 cut(s) 839
ArsI GACNNNNNNTTYG 2 cut(s) 272, 304
Asp700I GAANNNNTTC 1 cut(s) 669
Asp718I GGTACC 1 cut(s) 525
AspLEI GCGC 1 cut(s) 325
AspS9I GGNCC 1 cut(s) 427
AsuHPI GGTGA 2 cut(s) 565, 895
AsuII TTCGAA 1 cut(s) 712
AsuNHI GCTAGC 1 cut(s) 304
AvaII GGWCC 1 cut(s) 427
BaeGI GKGCMC 1 cut(s) 228
BaeI ACNNNNGTAYC 2 cut(s) 358, 391
BamHI GGATCC 1 cut(s) 175
BanI GGYRCC 1 cut(s) 525
BarI GAAGNNNNNNTAC 2 cut(s) 785, 817
BauI CACGAG 1 cut(s) 271
Bbv12I GWGCWC 1 cut(s) 51
BbvI GCAGC 1 cut(s) 760
BccI CCATC 4 cut(s) 53, 412, 439, 487
BciT130I CCWGG 1 cut(s) 890
BciVI GTATCC 1 cut(s) 74
BcoDI GTCTC 1 cut(s) 268
BfaI CTAG 4 cut(s) 212, 305, 309, 620
BfmI CTRYAG 1 cut(s) 406
BfuI GTATCC 1 cut(s) 74
BglII AGATCT 1 cut(s) 7
BisI GCNGC 1 cut(s) 774
BlsI GCNGC 1 cut(s) 775
Bme1390I CCNGG 1 cut(s) 890
Bme18I GGWCC 1 cut(s) 427
BmgT120I GGNCC 1 cut(s) 427
BmiI GGNNCC 3 cut(s) 177, 429, 527
BmrFI CCNGG 1 cut(s) 890
BmsI GCATC 2 cut(s) 87, 508
BmtI GCTAGC 1 cut(s) 308
BoxI GACNNNNGTC 1 cut(s) 620
Bpu10I CCTNAGC 1 cut(s) 101
Bpu14I TTCGAA 1 cut(s) 712
BpuEI CTTGAG 2 cut(s) 65, 857
Bsa29I ATCGAT 1 cut(s) 384
BsaHI GRCGYC 1 cut(s) 334
BsaI GGTCTC 1 cut(s) 268
BsaJI CCNNGG 2 cut(s) 31, 576
BsaXI ACNNNNNCTCC 2 cut(s) 852, 882
Bsc4I CCNNNNNNNGG 1 cut(s) 545
Bse1I ACTGG 2 cut(s) 349, 565
Bse3DI GCAATG 1 cut(s) 932
BseBI CCWGG 1 cut(s) 890
BseCI ATCGAT 1 cut(s) 384
BseDI CCNNGG 2 cut(s) 31, 576
BseGI GGATG 1 cut(s) 479
BseLI CCNNNNNNNGG 1 cut(s) 545
BseMI GCAATG 1 cut(s) 932
BseMII CTCAG 1 cut(s) 891
BseNI ACTGG 2 cut(s) 349, 565
BseRI GAGGAG 1 cut(s) 860
BseSI GKGCMC 1 cut(s) 228
BseXI GCAGC 1 cut(s) 760
BseYI CCCAGC 1 cut(s) 521
Bsh1236I CGCG 1 cut(s) 590
Bsh1285I CGRYCG 1 cut(s) 384
BshNI GGYRCC 1 cut(s) 525
BshVI ATCGAT 1 cut(s) 384
BsiEI CGRYCG 1 cut(s) 384
BsiHKAI GWGCWC 1 cut(s) 51
BslI CCNNNNNNNGG 1 cut(s) 545
BsmAI GTCTC 1 cut(s) 268
Bso31I GGTCTC 1 cut(s) 268
Bsp119I TTCGAA 1 cut(s) 712
Bsp1286I GDGCHC 2 cut(s) 51, 228
Bsp143I GATC 7 cut(s) 7, 163, 175, 381, 692, 876, 896
Bsp19I CCATGG 1 cut(s) 576
BspACI CCGC 2 cut(s) 588, 979
BspCNI CTCAG 1 cut(s) 892
BspDI ATCGAT 1 cut(s) 384
BspFNI CGCG 1 cut(s) 590
BspLI GGNNCC 3 cut(s) 177, 429, 527
BspOI GCTAGC 1 cut(s) 308
BspPI GGATC 4 cut(s) 158, 170, 183, 687
BspQI GCTCTTC 1 cut(s) 663
BspT104I TTCGAA 1 cut(s) 712
BspT107I GGYRCC 1 cut(s) 525
BspTNI GGTCTC 1 cut(s) 268
BsrDI GCAATG 1 cut(s) 932
BsrI ACTGG 2 cut(s) 349, 565
BssECI CCNNGG 2 cut(s) 31, 576
BssMI GATC 7 cut(s) 7, 163, 175, 381, 692, 876, 896
BssNI GRCGYC 1 cut(s) 334
BssSI CACGAG 1 cut(s) 271
BssT1I CCWWGG 1 cut(s) 576
Bst2BI CACGAG 1 cut(s) 271
Bst2UI CCWGG 1 cut(s) 890
Bst4CI ACNGT 2 cut(s) 24, 53
Bst6I CTCTTC 2 cut(s) 637, 663
BstACI GRCGYC 1 cut(s) 334
BstAPI GCANNNNNTGC 1 cut(s) 245
BstBI TTCGAA 1 cut(s) 712
BstC8I GCNNGC 3 cut(s) 306, 778, 977
BstDEI CTNAG 6 cut(s) 101, 233, 259, 371, 900, 927
BstDSI CCRYGG 1 cut(s) 576
BstF5I GGATG 1 cut(s) 479
BstFNI CGCG 1 cut(s) 590
BstHHI GCGC 1 cut(s) 325
BstKTI GATC 7 cut(s) 10, 166, 178, 384, 695, 879, 899
BstMAI GTCTC 1 cut(s) 268
BstMBI GATC 7 cut(s) 7, 163, 175, 381, 692, 876, 896
BstMCI CGRYCG 1 cut(s) 384
BstMWI GCNNNNNNNGC 2 cut(s) 245, 832
BstNI CCWGG 1 cut(s) 890
BstNSI RCATGY 2 cut(s) 710, 962
BstPAI GACNNNNGTC 1 cut(s) 620
BstSCI CCNGG 1 cut(s) 888
BstSFI CTRYAG 1 cut(s) 406
BstSLI GKGCMC 1 cut(s) 228
BstUI CGCG 1 cut(s) 590
BstV1I GCAGC 1 cut(s) 760
BstX2I RGATCY 2 cut(s) 7, 175
BstXI CCANNNNNNTGG 1 cut(s) 344
BstYI RGATCY 2 cut(s) 7, 175
Bsu15I ATCGAT 1 cut(s) 384
BsuI GTATCC 1 cut(s) 74
BsuTUI ATCGAT 1 cut(s) 384
BtgI CCRYGG 1 cut(s) 576
BtsCI GGATG 1 cut(s) 479
BtsIMutI CAGTG 1 cut(s) 114
Cac8I GCNNGC 3 cut(s) 306, 778, 977
CfoI GCGC 1 cut(s) 325
Cfr13I GGNCC 1 cut(s) 427
ClaI ATCGAT 1 cut(s) 384
CseI GACGC 1 cut(s) 342
CsiI ACCWGGT 1 cut(s) 888
Csp6I GTAC 3 cut(s) 256, 378, 526
CviAII CATG 5 cut(s) 577, 641, 707, 959, 999
CviJI RGCY 9 cut(s) 83, 130, 308, 318, 393, 688, 748, 868, 975
CviKI_1 RGCY 9 cut(s) 83, 130, 308, 318, 393, 688, 748, 868, 975
CviQI GTAC 3 cut(s) 256, 378, 526
DdeI CTNAG 6 cut(s) 101, 233, 259, 371, 900, 927
DpnI GATC 7 cut(s) 9, 165, 177, 383, 694, 878, 898
DpnII GATC 7 cut(s) 7, 163, 175, 381, 692, 876, 896
DraIII CACNNNGTG 1 cut(s) 458
Eam1104I CTCTTC 2 cut(s) 637, 663
EarI CTCTTC 2 cut(s) 637, 663
Eco130I CCWWGG 1 cut(s) 576
Eco31I GGTCTC 1 cut(s) 268
Eco32I GATATC 2 cut(s) 358, 594
Eco47I GGWCC 1 cut(s) 427
EcoRII CCWGG 1 cut(s) 888
EcoRV GATATC 2 cut(s) 358, 594
EcoT14I CCWWGG 1 cut(s) 576
ErhI CCWWGG 1 cut(s) 576
FaeI CATG 5 cut(s) 580, 644, 710, 962, 1002
FatI CATG 5 cut(s) 576, 640, 706, 958, 998
FblI GTMKAC 2 cut(s) 605, 734
Fnu4HI GCNGC 1 cut(s) 774
FokI GGATG 1 cut(s) 466
Fsp4HI GCNGC 1 cut(s) 774
FspBI CTAG 4 cut(s) 212, 305, 309, 620
GlaI GCGC 1 cut(s) 324
GluI GCNGC 1 cut(s) 774
GsaI CCCAGC 1 cut(s) 525
HgaI GACGC 1 cut(s) 342
HhaI GCGC 1 cut(s) 325
Hin1I GRCGYC 1 cut(s) 334
Hin1II CATG 5 cut(s) 580, 644, 710, 962, 1002
Hin6I GCGC 1 cut(s) 323
HinP1I GCGC 1 cut(s) 323
HinfI GANTC 2 cut(s) 70, 422
HphI GGTGA 2 cut(s) 565, 895
Hpy166II GTNNAC 5 cut(s) 298, 606, 735, 886, 924
Hpy188I TCNGA 4 cut(s) 427, 535, 901, 991
Hpy188III TCNNGA 7 cut(s) 67, 161, 442, 662, 674, 874, 952
Hpy8I GTNNAC 5 cut(s) 298, 606, 735, 886, 924
Hpy99I CGWCG 1 cut(s) 336
HpyAV CCTTC 3 cut(s) 141, 166, 500
HpyCH4III ACNGT 2 cut(s) 24, 53
HpyCH4IV ACGT 1 cut(s) 947
HpyCH4V TGCA 5 cut(s) 239, 248, 270, 644, 780
HpyF10VI GCNNNNNNNGC 2 cut(s) 245, 832
HpyF3I CTNAG 6 cut(s) 101, 233, 259, 371, 900, 927
HpySE526I ACGT 1 cut(s) 947
Hsp92I GRCGYC 1 cut(s) 334
Hsp92II CATG 5 cut(s) 580, 644, 710, 962, 1002
HspAI GCGC 1 cut(s) 323
KpnI GGTACC 1 cut(s) 529
Kzo9I GATC 7 cut(s) 7, 163, 175, 381, 692, 876, 896
LguI GCTCTTC 1 cut(s) 663
LmnI GCTCC 2 cut(s) 557, 873
LpnPI CCDG 8 cut(s) 80, 291, 330, 427, 507, 546, 875, 902
Lsp1109I GCAGC 1 cut(s) 760
LweI GCATC 2 cut(s) 87, 508
MabI ACCWGGT 1 cut(s) 888
MaeI CTAG 4 cut(s) 212, 305, 309, 620
MaeII ACGT 1 cut(s) 947
MaeIII GTNAC 2 cut(s) 700, 800
MalI GATC 7 cut(s) 9, 165, 177, 383, 694, 878, 898
MboI GATC 7 cut(s) 7, 163, 175, 381, 692, 876, 896
MboII GAAGA 6 cut(s) 215, 427, 624, 650, 776, 835
MfeI CAATTG 1 cut(s) 718
MflI RGATCY 2 cut(s) 7, 175
MhlI GDGCHC 2 cut(s) 51, 228
MluCI AATT 5 cut(s) 123, 718, 839, 969, 983
MnlI CCTC 8 cut(s) 41, 208, 482, 539, 594, 640, 881, 895
MroXI GAANNNNTTC 1 cut(s) 669
MseI TTAA 2 cut(s) 126, 351
MslI CAYNNNNRTG 1 cut(s) 143
MspR9I CCNGG 1 cut(s) 890
MunI CAATTG 1 cut(s) 718
MvaI CCWGG 1 cut(s) 890
MvnI CGCG 1 cut(s) 590
MwoI GCNNNNNNNGC 2 cut(s) 245, 832
NcoI CCATGG 1 cut(s) 576
NdeII GATC 7 cut(s) 7, 163, 175, 381, 692, 876, 896
NheI GCTAGC 1 cut(s) 304
NlaIII CATG 5 cut(s) 580, 644, 710, 962, 1002
NlaIV GGNNCC 3 cut(s) 177, 429, 527
NspI RCATGY 2 cut(s) 710, 962
NspV TTCGAA 1 cut(s) 712
PciI ACATGT 1 cut(s) 958
PciSI GCTCTTC 1 cut(s) 663
PdmI GAANNNNTTC 1 cut(s) 669
PfeI GAWTC 2 cut(s) 70, 422
PkrI GCNGC 1 cut(s) 775
Ple19I CGATCG 1 cut(s) 384
PscI ACATGT 1 cut(s) 958
PshAI GACNNNNGTC 1 cut(s) 620
Psp6I CCWGG 1 cut(s) 888
PspFI CCCAGC 1 cut(s) 521
PspGI CCWGG 1 cut(s) 888
PspN4I GGNNCC 3 cut(s) 177, 429, 527
PspPI GGNCC 1 cut(s) 427
PsuI RGATCY 2 cut(s) 7, 175
PvuI CGATCG 1 cut(s) 384
RsaI GTAC 3 cut(s) 257, 379, 527
RsaNI GTAC 3 cut(s) 256, 378, 526
RseI CAYNNNNRTG 1 cut(s) 143
SapI GCTCTTC 1 cut(s) 663
SaqAI TTAA 2 cut(s) 126, 351
SatI GCNGC 1 cut(s) 774
Sau3AI GATC 7 cut(s) 7, 163, 175, 381, 692, 876, 896
Sau96I GGNCC 1 cut(s) 427
ScrFI CCNGG 1 cut(s) 890
SduI GDGCHC 2 cut(s) 51, 228
SexAI ACCWGGT 1 cut(s) 888
SfaNI GCATC 2 cut(s) 87, 508
SfcI CTRYAG 1 cut(s) 406
SfuI TTCGAA 1 cut(s) 712
SinI GGWCC 1 cut(s) 427
SmiMI CAYNNNNRTG 1 cut(s) 143
SmlI CTYRAG 2 cut(s) 44, 872
SmoI CTYRAG 2 cut(s) 44, 872
Sse9I AATT 5 cut(s) 123, 718, 839, 969, 983
SsiI CCGC 2 cut(s) 588, 979
SspMI CTAG 4 cut(s) 212, 305, 309, 620
StyD4I CCNGG 1 cut(s) 888
StyI CCWWGG 1 cut(s) 576
TaaI ACNGT 2 cut(s) 24, 53
TaiI ACGT 1 cut(s) 950
TaqI TCGA 6 cut(s) 364, 384, 691, 712, 895, 951
TasI AATT 5 cut(s) 123, 718, 839, 969, 983
TatI WGTACW 1 cut(s) 255
TfiI GAWTC 2 cut(s) 70, 422
Tru1I TTAA 2 cut(s) 126, 351
Tru9I TTAA 2 cut(s) 126, 351
TscAI CASTG 1 cut(s) 121
TseI GCWGC 1 cut(s) 773
TspDTI ATGAA 5 cut(s) 17, 62, 216, 777, 806
TspGWI ACGGA 1 cut(s) 143
TspRI CASTG 1 cut(s) 121
VpaK11BI GGWCC 1 cut(s) 427
XapI RAATTY 1 cut(s) 839
XceI RCATGY 2 cut(s) 710, 962
XmiI GTMKAC 2 cut(s) 605, 734
XmnI GAANNNNTTC 1 cut(s) 669
XspI CTAG 4 cut(s) 212, 305, 309, 620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.