transposition, RNA-mediated
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom13g24240 pycom520g00420 |
| rosa_chinensis | RchiOBHm_Chr1g0323091 RchiOBHm_Chr1g0367381 RchiOBHm_Chr2g0138291 RchiOBHm_Chr2g0148911 RchiOBHm_Chr2g0150891 RchiOBHm_Chr3g0491271 RchiOBHm_Chr4g0388351 RchiOBHm_Chr4g0435401 RchiOBHm_Chr5g0012171 RchiOBHm_Chr6g0282941 RchiOBHm_Chr7g0185711 RchiOBHm_Chr7g0186831 |
| rosa_multiflora | Rmu_sc0001998.1_g000012 |
| rosa_rugosa | Rorug07G0292400 |
| rosa_wichuraiana | Rw0G004540 Rw1G001620 Rw1G005040 Rw1G013360 Rw1G021570 Rw2G031870 Rw4G000690 Rw5G008320 Rw5G009260 Rw5G022080 Rw6G007050 Rw7G013470 Rw7G020380 Rw7G031880 Rw7G041220 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 101, 230 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 41, 397 |
| AflIII | ACRYGT | 1 cut(s) | 454 |
| AgsI | TTSAA | 2 cut(s) | 226, 377 |
| AluBI | AGCT | 1 cut(s) | 272 |
| AluI | AGCT | 1 cut(s) | 272 |
| ApeKI | GCWGC | 1 cut(s) | 269 |
| AsuHPI | GGTGA | 1 cut(s) | 320 |
| BbvI | GCAGC | 1 cut(s) | 281 |
| BceAI | ACGGC | 1 cut(s) | 149 |
| BfmI | CTRYAG | 1 cut(s) | 192 |
| BisI | GCNGC | 1 cut(s) | 270 |
| BlsI | GCNGC | 1 cut(s) | 271 |
| BmsI | GCATC | 2 cut(s) | 4, 474 |
| Bpu10I | CCTNAGC | 1 cut(s) | 185 |
| BsaJI | CCNNGG | 1 cut(s) | 72 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 41, 397 |
| BseDI | CCNNGG | 1 cut(s) | 72 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 41, 397 |
| BseXI | GCAGC | 1 cut(s) | 281 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 41, 397 |
| BsmI | GAATGC | 1 cut(s) | 179 |
| Bsp143I | GATC | 1 cut(s) | 392 |
| Bsp19I | CCATGG | 1 cut(s) | 72 |
| BspQI | GCTCTTC | 1 cut(s) | 455 |
| BssECI | CCNNGG | 1 cut(s) | 72 |
| BssMI | GATC | 1 cut(s) | 392 |
| BssT1I | CCWWGG | 1 cut(s) | 72 |
| Bst6I | CTCTTC | 1 cut(s) | 455 |
| BstC8I | GCNNGC | 1 cut(s) | 274 |
| BstDEI | CTNAG | 2 cut(s) | 185, 423 |
| BstDSI | CCRYGG | 1 cut(s) | 72 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 39 |
| BstKTI | GATC | 1 cut(s) | 395 |
| BstMBI | GATC | 1 cut(s) | 392 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 328 |
| BstNSI | RCATGY | 2 cut(s) | 252, 458 |
| BstSFI | CTRYAG | 1 cut(s) | 192 |
| BstV1I | GCAGC | 1 cut(s) | 281 |
| BtgI | CCRYGG | 1 cut(s) | 72 |
| BtsI | GCAGTG | 1 cut(s) | 81 |
| BtsIMutI | CAGTG | 1 cut(s) | 81 |
| Cac8I | GCNNGC | 1 cut(s) | 274 |
| CviAII | CATG | 6 cut(s) | 73, 137, 158, 249, 455, 495 |
| CviJI | RGCY | 3 cut(s) | 164, 184, 272 |
| CviKI_1 | RGCY | 3 cut(s) | 164, 184, 272 |
| DdeI | CTNAG | 2 cut(s) | 185, 423 |
| DpnI | GATC | 1 cut(s) | 394 |
| DpnII | GATC | 1 cut(s) | 392 |
| Eam1104I | CTCTTC | 1 cut(s) | 455 |
| EarI | CTCTTC | 1 cut(s) | 455 |
| Eco130I | CCWWGG | 1 cut(s) | 72 |
| Eco32I | GATATC | 1 cut(s) | 90 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 39 |
| EcoRV | GATATC | 1 cut(s) | 90 |
| EcoT14I | CCWWGG | 1 cut(s) | 72 |
| EcoT22I | ATGCAT | 2 cut(s) | 179, 254 |
| ErhI | CCWWGG | 1 cut(s) | 72 |
| FaeI | CATG | 6 cut(s) | 76, 140, 161, 252, 458, 498 |
| FatI | CATG | 6 cut(s) | 72, 136, 157, 248, 454, 494 |
| FauNDI | CATATG | 1 cut(s) | 179 |
| FblI | GTMKAC | 2 cut(s) | 101, 230 |
| Fnu4HI | GCNGC | 1 cut(s) | 270 |
| Fsp4HI | GCNGC | 1 cut(s) | 270 |
| GluI | GCNGC | 1 cut(s) | 270 |
| Hin1II | CATG | 6 cut(s) | 76, 140, 161, 252, 458, 498 |
| HphI | GGTGA | 1 cut(s) | 320 |
| Hpy166II | GTNNAC | 4 cut(s) | 102, 231, 382, 412 |
| Hpy188I | TCNGA | 5 cut(s) | 31, 392, 397, 470, 487 |
| Hpy188III | TCNNGA | 1 cut(s) | 448 |
| Hpy8I | GTNNAC | 4 cut(s) | 102, 231, 382, 412 |
| HpyAV | CCTTC | 1 cut(s) | 454 |
| HpyCH4V | TGCA | 6 cut(s) | 17, 140, 177, 252, 269, 276 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 328 |
| HpyF3I | CTNAG | 2 cut(s) | 185, 423 |
| Hsp92II | CATG | 6 cut(s) | 76, 140, 161, 252, 458, 498 |
| Kzo9I | GATC | 1 cut(s) | 392 |
| LguI | GCTCTTC | 1 cut(s) | 455 |
| LmnI | GCTCC | 1 cut(s) | 53 |
| LpnPI | CCDG | 2 cut(s) | 3, 344 |
| Lsp1109I | GCAGC | 1 cut(s) | 281 |
| LweI | GCATC | 2 cut(s) | 4, 474 |
| MaeIII | GTNAC | 2 cut(s) | 308, 429 |
| MalI | GATC | 1 cut(s) | 394 |
| MboI | GATC | 1 cut(s) | 392 |
| MboII | GAAGA | 2 cut(s) | 272, 472 |
| MnlI | CCTC | 5 cut(s) | 45, 90, 139, 203, 391 |
| Mph1103I | ATGCAT | 2 cut(s) | 179, 254 |
| Mva1269I | GAATGC | 1 cut(s) | 179 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 328 |
| NcoI | CCATGG | 1 cut(s) | 72 |
| NdeI | CATATG | 1 cut(s) | 179 |
| NdeII | GATC | 1 cut(s) | 392 |
| NlaIII | CATG | 6 cut(s) | 76, 140, 161, 252, 458, 498 |
| NmuCI | GTSAC | 1 cut(s) | 308 |
| NsiI | ATGCAT | 2 cut(s) | 179, 254 |
| NspI | RCATGY | 2 cut(s) | 252, 458 |
| PciI | ACATGT | 1 cut(s) | 454 |
| PciSI | GCTCTTC | 1 cut(s) | 455 |
| PctI | GAATGC | 1 cut(s) | 179 |
| PkrI | GCNGC | 1 cut(s) | 271 |
| PscI | ACATGT | 1 cut(s) | 454 |
| SapI | GCTCTTC | 1 cut(s) | 455 |
| SatI | GCNGC | 1 cut(s) | 270 |
| Sau3AI | GATC | 1 cut(s) | 392 |
| SetI | ASST | 7 cut(s) | 46, 101, 191, 247, 274, 298, 446 |
| SfaNI | GCATC | 2 cut(s) | 4, 474 |
| SfcI | CTRYAG | 1 cut(s) | 192 |
| SspI | AATATT | 1 cut(s) | 373 |
| StyI | CCWWGG | 1 cut(s) | 72 |
| TaqI | TCGA | 2 cut(s) | 208, 447 |
| TscAI | CASTG | 1 cut(s) | 88 |
| TseFI | GTSAC | 1 cut(s) | 308 |
| TseI | GCWGC | 1 cut(s) | 269 |
| Tsp45I | GTSAC | 1 cut(s) | 308 |
| TspDTI | ATGAA | 4 cut(s) | 174, 273, 289, 302 |
| TspRI | CASTG | 1 cut(s) | 88 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 39 |
| XceI | RCATGY | 2 cut(s) | 252, 458 |
| XmiI | GTMKAC | 2 cut(s) | 101, 230 |
| Zsp2I | ATGCAT | 2 cut(s) | 179, 254 |