Rw5G008320

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0004874
Physical Location & Seq
Reverse (-)
8919249 .. 8919617
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G008320.1

Sequence Viewer

Length: 369 bp
ATGATTCACCACATTCGAAGCACCTGTGATTTACCTTCAGTAACTGACAAACCAACAGTCATGTATGAAGACAATACTGCTTGTATTGCTCAGATTAAAGAAGGATTCATCAAAGGTGACAAGACTAAGCATATCGCGCCAAAGTTCTTTCACACTCATGAGCTTCAAAAGAATCAAGAAATTGCAGTGAAGCAAATTCGATCCGACGAAAACTTGGCTGATTTATTCACCAAATCTCTACCTAAGTGTACTTTCCAGAAGTTAGTGGAAGGGATCGGATTGAGACGACTCTCGAAGCTATCAAGCGACGCATGCAAAGATCAGGGGGAGATTGCAATCGGGGGGAGCATCAAGAAACATGCTACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.63

Weight (kDa)

8.91

Isoelectric Point (pI)

54.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 137
AclWI GGATC 2 cut(s) 195, 281
AcsI RAATTY 1 cut(s) 195
AcuI CTGAAG 1 cut(s) 21
AfaI GTAC 1 cut(s) 250
AgsI TTSAA 1 cut(s) 167
AluBI AGCT 2 cut(s) 163, 298
AluI AGCT 2 cut(s) 163, 298
Alw26I GTCTC 1 cut(s) 277
AlwI GGATC 2 cut(s) 195, 281
AlwNI CAGNNNCTG 1 cut(s) 44
ApoI RAATTY 1 cut(s) 195
ArsI GACNNNNNNTTYG 2 cut(s) 42, 74
AspLEI GCGC 1 cut(s) 139
AsuHPI GGTGA 2 cut(s) 128, 220
AsuII TTCGAA 1 cut(s) 16
BbsI GAAGAC 1 cut(s) 75
BcoDI GTCTC 1 cut(s) 277
BfaI CTAG 1 cut(s) 367
BmsI GCATC 1 cut(s) 357
BpiI GAAGAC 1 cut(s) 75
Bpu14I TTCGAA 1 cut(s) 16
BsaBI GATNNNNATC 1 cut(s) 335
Bse8I GATNNNNATC 1 cut(s) 335
BseJI GATNNNNATC 1 cut(s) 335
BseMII CTCAG 1 cut(s) 104
Bsh1236I CGCG 1 cut(s) 137
BsmAI GTCTC 1 cut(s) 277
BsmBI CGTCTC 1 cut(s) 277
Bsp119I TTCGAA 1 cut(s) 16
Bsp143I GATC 3 cut(s) 200, 273, 319
BspCNI CTCAG 1 cut(s) 103
BspFNI CGCG 1 cut(s) 137
BspHI TCATGA 1 cut(s) 157
BspPI GGATC 2 cut(s) 195, 281
BspT104I TTCGAA 1 cut(s) 16
BssMI GATC 3 cut(s) 200, 273, 319
Bst4CI ACNGT 1 cut(s) 58
BstBI TTCGAA 1 cut(s) 16
BstC8I GCNNGC 1 cut(s) 313
BstDEI CTNAG 3 cut(s) 90, 126, 243
BstFNI CGCG 1 cut(s) 137
BstHHI GCGC 1 cut(s) 139
BstKTI GATC 3 cut(s) 203, 276, 322
BstMAI GTCTC 1 cut(s) 277
BstMBI GATC 3 cut(s) 200, 273, 319
BstMWI GCNNNNNNNGC 3 cut(s) 86, 136, 312
BstNSI RCATGY 2 cut(s) 315, 362
BstUI CGCG 1 cut(s) 137
BstV2I GAAGAC 1 cut(s) 75
BtsI GCAGTG 1 cut(s) 192
BtsIMutI CAGTG 1 cut(s) 192
Cac8I GCNNGC 1 cut(s) 313
CaiI CAGNNNCTG 1 cut(s) 44
CciI TCATGA 1 cut(s) 157
CfoI GCGC 1 cut(s) 139
CseI GACGC 1 cut(s) 317
Csp6I GTAC 1 cut(s) 249
CviAII CATG 4 cut(s) 61, 158, 312, 359
CviJI RGCY 3 cut(s) 163, 218, 298
CviKI_1 RGCY 3 cut(s) 163, 218, 298
CviQI GTAC 1 cut(s) 249
DdeI CTNAG 3 cut(s) 90, 126, 243
DpnI GATC 3 cut(s) 202, 275, 321
DpnII GATC 3 cut(s) 200, 273, 319
Eco57I CTGAAG 1 cut(s) 21
Esp3I CGTCTC 1 cut(s) 277
FaeI CATG 4 cut(s) 64, 161, 315, 362
FaiI YATR 6 cut(s) 62, 66, 132, 159, 313, 360
FatI CATG 4 cut(s) 60, 157, 311, 358
FspBI CTAG 1 cut(s) 367
GlaI GCGC 1 cut(s) 138
HgaI GACGC 1 cut(s) 317
HhaI GCGC 1 cut(s) 139
Hin1II CATG 4 cut(s) 64, 161, 315, 362
Hin6I GCGC 1 cut(s) 137
HinP1I GCGC 1 cut(s) 137
HinfI GANTC 4 cut(s) 4, 105, 172, 288
HphI GGTGA 2 cut(s) 128, 220
Hpy166II GTNNAC 1 cut(s) 249
Hpy188I TCNGA 3 cut(s) 93, 205, 278
Hpy188III TCNNGA 5 cut(s) 158, 176, 256, 292, 352
Hpy8I GTNNAC 1 cut(s) 249
Hpy99I CGWCG 2 cut(s) 209, 311
HpyAV CCTTC 3 cut(s) 45, 95, 263
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4V TGCA 3 cut(s) 185, 315, 335
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 136, 312
HpyF3I CTNAG 3 cut(s) 90, 126, 243
Hsp92II CATG 4 cut(s) 64, 161, 315, 362
HspAI GCGC 1 cut(s) 137
Kzo9I GATC 3 cut(s) 200, 273, 319
LmnI GCTCC 1 cut(s) 345
LpnPI CCDG 3 cut(s) 37, 269, 308
LweI GCATC 1 cut(s) 357
MaeI CTAG 1 cut(s) 367
MaeIII GTNAC 2 cut(s) 40, 116
MalI GATC 3 cut(s) 202, 275, 321
MboI GATC 3 cut(s) 200, 273, 319
MboII GAAGA 1 cut(s) 80
MluCI AATT 2 cut(s) 180, 195
MlyI GAGTC 1 cut(s) 282
MmeI TCCRAC 1 cut(s) 228
MseI TTAA 1 cut(s) 96
MslI CAYNNNNRTG 1 cut(s) 156
MvnI CGCG 1 cut(s) 137
MwoI GCNNNNNNNGC 3 cut(s) 86, 136, 312
NdeII GATC 3 cut(s) 200, 273, 319
NlaIII CATG 4 cut(s) 64, 161, 315, 362
NmuCI GTSAC 1 cut(s) 116
NspI RCATGY 2 cut(s) 315, 362
NspV TTCGAA 1 cut(s) 16
PaeI GCATGC 1 cut(s) 315
PagI TCATGA 1 cut(s) 157
PfeI GAWTC 3 cut(s) 4, 105, 172
PleI GAGTC 1 cut(s) 282
PpsI GAGTC 1 cut(s) 282
PstNI CAGNNNCTG 1 cut(s) 44
RsaI GTAC 1 cut(s) 250
RsaNI GTAC 1 cut(s) 249
RseI CAYNNNNRTG 1 cut(s) 156
SaqAI TTAA 1 cut(s) 96
Sau3AI GATC 3 cut(s) 200, 273, 319
SchI GAGTC 1 cut(s) 282
SetI ASST 7 cut(s) 26, 37, 118, 165, 244, 300, 368
SfaNI GCATC 1 cut(s) 357
SfuI TTCGAA 1 cut(s) 16
SmiMI CAYNNNNRTG 1 cut(s) 156
SphI GCATGC 1 cut(s) 315
Sse9I AATT 2 cut(s) 180, 195
SspMI CTAG 1 cut(s) 367
TaaI ACNGT 1 cut(s) 58
TaqI TCGA 3 cut(s) 16, 199, 293
TasI AATT 2 cut(s) 180, 195
TatI WGTACW 1 cut(s) 248
TfiI GAWTC 3 cut(s) 4, 105, 172
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TscAI CASTG 1 cut(s) 192
TseFI GTSAC 1 cut(s) 116
Tsp45I GTSAC 1 cut(s) 116
TspDTI ATGAA 2 cut(s) 81, 97
TspRI CASTG 1 cut(s) 192
XapI RAATTY 1 cut(s) 195
XceI RCATGY 2 cut(s) 315, 362
XspI CTAG 1 cut(s) 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.