Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0004874

Physical Location & Seq

Genomic Coordinates Forward (+)

23120381 .. 23121261

Gene Structure 881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G020380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGAATCTGATTGGTACTCCTGAAGAGATCAAAGAAACCGCAAAGCATCTGAAGTCTGAATTCGAGATGAAAGATCTTGGGAGAACGAATTACTGCCTTGGCCTGGAGCTCGAGCACCATCCTAAGAGAGATCCGTTTCGTCCTGTTGATGATAACGAAGAGATATTGGCACCAGAAGTCCCATATCTAAGTGCAATAGGCGCATTATTGTACTTGGCTCAATGCACTAGACCAGAAATTTCATTCTCTGTGAACTTGTTAGCTAGATATAGCTGCTATCTATCAGACCCGCACAAGGCGCGTTCCCAAACTGGTTATGTCTTTACCATTGGGAATACTGCAATTTCTTGGAGGTCTACAAAACAGACTCTTGTTGCTACCTCTTCGAATCATGCTAAGATTCTAGCTCTTCACGAAGCAGTACGTGAATGTATATGGTTGAGAGCCATCACAAAGCATGTTCGAAGCACATGTGGACTGTATTCCACTACTGATGAACCAACCACCATCCACGAAGATAATGCTGCTTGTATTGAGCAAATGAAGACGGGTTTCATCAAAGGAGACAACACCAAACATATTGCACCGAAGTTCTTCTTCAATCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

202

Amino Acids

22.84

Weight (kDa)

6.75

Isoelectric Point (pI)

49.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004874)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g24240 pycom520g00420
rosa_chinensis	RchiOBHm_Chr1g0323091 RchiOBHm_Chr1g0367381 RchiOBHm_Chr2g0138291 RchiOBHm_Chr2g0148911 RchiOBHm_Chr2g0150891 RchiOBHm_Chr3g0491271 RchiOBHm_Chr4g0388351 RchiOBHm_Chr4g0435401 RchiOBHm_Chr5g0012171 RchiOBHm_Chr6g0282941 RchiOBHm_Chr7g0185711 RchiOBHm_Chr7g0186831
rosa_multiflora	Rmu_sc0001998.1_g000012
rosa_rugosa	Rorug07G0292400
rosa_wichuraiana	Rw0G004540 Rw1G001620 Rw1G005040 Rw1G013360 Rw1G021570 Rw2G031870 Rw4G000690 Rw5G008320 Rw5G009260 Rw5G022080 Rw6G007050 Rw7G013470 Rw7G020380 Rw7G031880 Rw7G041220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	169
AccI	GTMKAC	1 cut(s)	356
AccII	CGCG	1 cut(s)	301
AciI	CCGC	2 cut(s)	39, 290
AclWI	GGATC	1 cut(s)	125
AcsI	RAATTY	2 cut(s)	59, 237
AcuI	CTGAAG	2 cut(s)	42, 71
AfaI	GTAC	3 cut(s)	16, 212, 423
AfiI	CCNNNNNNNGG	2 cut(s)	103, 295
AflIII	ACRYGT	1 cut(s)	470
AgsI	TTSAA	1 cut(s)	601
AjnI	CCWGG	1 cut(s)	102
AluBI	AGCT	4 cut(s)	109, 263, 273, 407
AluI	AGCT	4 cut(s)	109, 263, 273, 407
Alw21I	GWGCWC	2 cut(s)	111, 117
Alw26I	GTCTC	1 cut(s)	558
AlwI	GGATC	1 cut(s)	125
Ama87I	CYCGRG	1 cut(s)	110
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	2 cut(s)	273, 524
ApoI	RAATTY	2 cut(s)	59, 237
Asp700I	GAANNNNTTC	1 cut(s)	593
AspLEI	GCGC	2 cut(s)	203, 301
AsuII	TTCGAA	2 cut(s)	386, 463
AvaI	CYCGRG	1 cut(s)	110
BanI	GGYRCC	1 cut(s)	169
BanII	GRGCYC	1 cut(s)	111
BbsI	GAAGAC	1 cut(s)	551
Bbv12I	GWGCWC	2 cut(s)	111, 117
BbvI	GCAGC	2 cut(s)	260, 511
BccI	CCATC	3 cut(s)	126, 455, 515
BcgI	CGANNNNNNTGC	2 cut(s)	503, 537
BciT130I	CCWGG	1 cut(s)	104
BcoDI	GTCTC	1 cut(s)	558
BfaI	CTAG	3 cut(s)	228, 264, 404
BglII	AGATCT	1 cut(s)	73
BisI	GCNGC	2 cut(s)	274, 525
BlsI	GCNGC	2 cut(s)	275, 526
Bme1390I	CCNGG	1 cut(s)	104
BmeT110I	CYCGRG	1 cut(s)	110
BmiI	GGNNCC	1 cut(s)	171
BmrFI	CCNGG	1 cut(s)	104
BmsI	GCATC	1 cut(s)	55
BpiI	GAAGAC	1 cut(s)	551
BpmI	CTGGAG	1 cut(s)	125
Bpu14I	TTCGAA	2 cut(s)	386, 463
BsaAI	YACGTR	1 cut(s)	425
BsaJI	CCNNGG	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 295
Bse1I	ACTGG	1 cut(s)	316
BseBI	CCWGG	1 cut(s)	104
BseDI	CCNNGG	1 cut(s)	97
BseGI	GGATG	2 cut(s)	118, 507
BseLI	CCNNNNNNNGG	2 cut(s)	103, 295
BseNI	ACTGG	1 cut(s)	316
BseXI	GCAGC	2 cut(s)	260, 511
Bsh1236I	CGCG	1 cut(s)	301
BshFI	GGCC	1 cut(s)	102
BshNI	GGYRCC	1 cut(s)	169
BsiHKAI	GWGCWC	2 cut(s)	111, 117
BsiHKCI	CYCGRG	1 cut(s)	110
BslFI	GGGAC	1 cut(s)	164
BslI	CCNNNNNNNGG	2 cut(s)	103, 295
BsmAI	GTCTC	1 cut(s)	558
BsmFI	GGGAC	1 cut(s)	164
BsnI	GGCC	1 cut(s)	102
BsoBI	CYCGRG	1 cut(s)	110
Bsp119I	TTCGAA	2 cut(s)	386, 463
Bsp1286I	GDGCHC	2 cut(s)	111, 117
Bsp143I	GATC	3 cut(s)	27, 73, 130
BspACI	CCGC	2 cut(s)	39, 290
BspANI	GGCC	1 cut(s)	102
BspFNI	CGCG	1 cut(s)	301
BspLI	GGNNCC	1 cut(s)	171
BspPI	GGATC	1 cut(s)	125
BspQI	GCTCTTC	1 cut(s)	414
BspT104I	TTCGAA	2 cut(s)	386, 463
BspT107I	GGYRCC	1 cut(s)	169
BsrI	ACTGG	1 cut(s)	316
BssECI	CCNNGG	1 cut(s)	97
BssMI	GATC	3 cut(s)	27, 73, 130
BssT1I	CCWWGG	1 cut(s)	97
Bst2UI	CCWGG	1 cut(s)	104
Bst4CI	ACNGT	1 cut(s)	480
Bst6I	CTCTTC	4 cut(s)	18, 153, 388, 414
BstBAI	YACGTR	1 cut(s)	425
BstBI	TTCGAA	2 cut(s)	386, 463
BstDEI	CTNAG	3 cut(s)	123, 188, 396
BstF5I	GGATG	2 cut(s)	118, 507
BstFNI	CGCG	1 cut(s)	301
BstHHI	GCGC	2 cut(s)	203, 301
BstKTI	GATC	3 cut(s)	30, 76, 133
BstMAI	GTCTC	1 cut(s)	558
BstMBI	GATC	3 cut(s)	27, 73, 130
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 298
BstNI	CCWGG	1 cut(s)	104
BstNSI	RCATGY	2 cut(s)	461, 474
BstSCI	CCNGG	1 cut(s)	102
BstUI	CGCG	1 cut(s)	301
BstV1I	GCAGC	2 cut(s)	260, 511
BstV2I	GAAGAC	1 cut(s)	551
BstX2I	RGATCY	2 cut(s)	73, 130
BstYI	RGATCY	2 cut(s)	73, 130
BsuRI	GGCC	1 cut(s)	102
BtsCI	GGATG	2 cut(s)	118, 507
CfoI	GCGC	2 cut(s)	203, 301
Csp6I	GTAC	3 cut(s)	15, 211, 422
CviAII	CATG	3 cut(s)	392, 458, 471
CviJI	RGCY	7 cut(s)	102, 109, 218, 263, 273, 407, 446
CviKI_1	RGCY	7 cut(s)	102, 109, 218, 263, 273, 407, 446
CviQI	GTAC	3 cut(s)	15, 211, 422
DdeI	CTNAG	3 cut(s)	123, 188, 396
DpnI	GATC	3 cut(s)	29, 75, 132
DpnII	GATC	3 cut(s)	27, 73, 130
Eam1104I	CTCTTC	4 cut(s)	18, 153, 388, 414
EarI	CTCTTC	4 cut(s)	18, 153, 388, 414
Ecl136II	GAGCTC	1 cut(s)	109
Eco130I	CCWWGG	1 cut(s)	97
Eco24I	GRGCYC	1 cut(s)	111
Eco53kI	GAGCTC	1 cut(s)	109
Eco57I	CTGAAG	2 cut(s)	42, 71
Eco88I	CYCGRG	1 cut(s)	110
EcoICRI	GAGCTC	1 cut(s)	109
EcoRI	GAATTC	1 cut(s)	59
EcoRII	CCWGG	1 cut(s)	102
EcoT14I	CCWWGG	1 cut(s)	97
EcoT38I	GRGCYC	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	97
FaeI	CATG	3 cut(s)	395, 461, 474
FaiI	YATR	9 cut(s)	184, 270, 318, 393, 434, 436, 459, 472, 579
FalI	AAGNNNNNCTT	1 cut(s)	581
FaqI	GGGAC	1 cut(s)	164
FatI	CATG	3 cut(s)	391, 457, 470
FauI	CCCGC	1 cut(s)	297
FblI	GTMKAC	1 cut(s)	356
Fnu4HI	GCNGC	2 cut(s)	274, 525
FokI	GGATG	2 cut(s)	105, 494
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	2 cut(s)	274, 525
FspBI	CTAG	3 cut(s)	228, 264, 404
GlaI	GCGC	2 cut(s)	202, 300
GluI	GCNGC	2 cut(s)	274, 525
GsuI	CTGGAG	1 cut(s)	125
HaeIII	GGCC	1 cut(s)	102
HhaI	GCGC	2 cut(s)	203, 301
Hin1II	CATG	3 cut(s)	395, 461, 474
Hin6I	GCGC	2 cut(s)	201, 299
HinP1I	GCGC	2 cut(s)	201, 299
HinfI	GANTC	4 cut(s)	4, 367, 388, 400
Hpy166II	GTNNAC	3 cut(s)	253, 357, 476
Hpy188I	TCNGA	4 cut(s)	9, 51, 58, 286
Hpy188III	TCNNGA	3 cut(s)	20, 64, 413
Hpy8I	GTNNAC	3 cut(s)	253, 357, 476
HpyCH4III	ACNGT	1 cut(s)	480
HpyCH4IV	ACGT	1 cut(s)	424
HpyCH4V	TGCA	4 cut(s)	194, 225, 341, 584
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 298
HpyF3I	CTNAG	3 cut(s)	123, 188, 396
HpySE526I	ACGT	1 cut(s)	424
Hsp92II	CATG	3 cut(s)	395, 461, 474
HspAI	GCGC	2 cut(s)	201, 299
Kzo9I	GATC	3 cut(s)	27, 73, 130
LguI	GCTCTTC	1 cut(s)	414
LmnI	GCTCC	1 cut(s)	106
LpnPI	CCDG	7 cut(s)	33, 89, 116, 156, 186, 246, 297
Lsp1109I	GCAGC	2 cut(s)	260, 511
LweI	GCATC	1 cut(s)	55
MaeI	CTAG	3 cut(s)	228, 264, 404
MaeII	ACGT	1 cut(s)	424
MalI	GATC	3 cut(s)	29, 75, 132
MboI	GATC	3 cut(s)	27, 73, 130
MboII	GAAGA	8 cut(s)	35, 170, 375, 401, 527, 556, 586, 589
MflI	RGATCY	2 cut(s)	73, 130
MhlI	GDGCHC	2 cut(s)	111, 117
MluCI	AATT	4 cut(s)	59, 88, 237, 342
MlyI	GAGTC	1 cut(s)	361
MnlI	CCTC	2 cut(s)	345, 391
MroXI	GAANNNNTTC	1 cut(s)	593
MspR9I	CCNGG	1 cut(s)	104
MvaI	CCWGG	1 cut(s)	104
MvnI	CGCG	1 cut(s)	301
MwoI	GCNNNNNNNGC	2 cut(s)	200, 298
NdeII	GATC	3 cut(s)	27, 73, 130
NlaIII	CATG	3 cut(s)	395, 461, 474
NlaIV	GGNNCC	1 cut(s)	171
NspI	RCATGY	2 cut(s)	461, 474
NspV	TTCGAA	2 cut(s)	386, 463
PaeR7I	CTCGAG	1 cut(s)	110
PciI	ACATGT	1 cut(s)	470
PciSI	GCTCTTC	1 cut(s)	414
PdmI	GAANNNNTTC	1 cut(s)	593
PfeI	GAWTC	3 cut(s)	4, 388, 400
PkrI	GCNGC	2 cut(s)	275, 526
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
Ppu21I	YACGTR	1 cut(s)	425
PscI	ACATGT	1 cut(s)	470
Psp124BI	GAGCTC	1 cut(s)	111
Psp6I	CCWGG	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	102
PspN4I	GGNNCC	1 cut(s)	171
PspXI	VCTCGAGB	1 cut(s)	110
PsuI	RGATCY	2 cut(s)	73, 130
RsaI	GTAC	3 cut(s)	16, 212, 423
RsaNI	GTAC	3 cut(s)	15, 211, 422
SacI	GAGCTC	1 cut(s)	111
SapI	GCTCTTC	1 cut(s)	414
SatI	GCNGC	2 cut(s)	274, 525
Sau3AI	GATC	3 cut(s)	27, 73, 130
SchI	GAGTC	1 cut(s)	361
ScrFI	CCNGG	1 cut(s)	104
SduI	GDGCHC	2 cut(s)	111, 117
SetI	ASST	7 cut(s)	111, 265, 275, 356, 383, 409, 427
SfaNI	GCATC	1 cut(s)	55
Sfr274I	CTCGAG	1 cut(s)	110
SfuI	TTCGAA	2 cut(s)	386, 463
SlaI	CTCGAG	1 cut(s)	110
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	4 cut(s)	59, 88, 237, 342
SsiI	CCGC	2 cut(s)	39, 290
SspMI	CTAG	3 cut(s)	228, 264, 404
SstI	GAGCTC	1 cut(s)	111
StyD4I	CCNGG	1 cut(s)	102
StyI	CCWWGG	1 cut(s)	97
TaaI	ACNGT	1 cut(s)	480
TaiI	ACGT	1 cut(s)	427
TaqI	TCGA	4 cut(s)	63, 111, 386, 463
TasI	AATT	4 cut(s)	59, 88, 237, 342
TatI	WGTACW	1 cut(s)	210
TfiI	GAWTC	3 cut(s)	4, 388, 400
TseI	GCWGC	2 cut(s)	273, 524
TspDTI	ATGAA	6 cut(s)	17, 83, 231, 510, 544, 557
TspGWI	ACGGA	1 cut(s)	123
XapI	RAATTY	2 cut(s)	59, 237
XceI	RCATGY	2 cut(s)	461, 474
XhoI	CTCGAG	1 cut(s)	110
XmiI	GTMKAC	1 cut(s)	356
XmnI	GAANNNNTTC	1 cut(s)	593
XspI	CTAG	3 cut(s)	228, 264, 404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.