RchiOBHm_Chr1g0323091

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0004874
Physical Location & Seq
Forward (+)
10678707 .. 10679731
1025 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55303

Sequence Viewer

Length: 930 bp
ATGATCGGCCGTAGTCTTGAGCCCGGAAAAGATCCGTTTCGTCCAAGGGATGAGGACGAAGAACCATTAGAGGCCGAGGTGCCCTATTTGAGTGCAATAGGCGCATTATTGTACTTAGCTCAATGCACAAGACCGGATATCTCATTCGCAGTGAACTTGTTAGCTCGACATAGCTCTGCGCCAACACGCCGCCATTGGATTGGTATAAAGACAATCTTTCGATACCTAAGAGGTACGATTGATATGGGCCTATTCTATCCCTACAGAGAGAAAAGGAATGACGGAAAATTGGGATTGGACCCCAAGAGGCAAAACGCCCCCGTCCATGGAATGGCCGCCGGCCATGTTGCCGCCGCCGGCGCCGCCACCGCTCATGGTGGCCGGCATTCTCCTATCTCCCTCCATCAAAACGACAATGATGTCTTGATGGGTTTTGCTGATGCAGGGTACCTCTCTGACCCTCACAAAGGTCGCTCCCAAACTGGTTATGTCTTTACCATGGGAAGCACTGCGATATCTTGGAGGTCTACAAAACAGACCCTTGTTGCTACTTCCTCAAATCATGCAGAGATTATTGCTCTACATGAAGCTGTACGTGAATGTGTATGGCTAAGGTCCGTAATTCGACACATTCAAGGAAGTTGTGGTTTGAAGTCTACCACAAATGAACCTACATGCATTTATGAGGATAATGCAGCTTGTATTGAACAAATGAAGTTAGGTTTCATCAAGGGCGACAACACCAAGCATATATCGCCTAAGTTCTTTTATAATCAGCAACAACAATCACTCCTAAAGATTGAAGTGAATCAAATCCGATCAGAGGATAATGTAGCGGACTTATTCACTAAGTCGTTACCTAAATCCACCTTCGAGAAACATGTGAAGAGCATCGGATTGAGAAAGTTATCCGAACTCCCACGATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

309

Amino Acids

34.41

Weight (kDa)

9.12

Isoelectric Point (pI)

52.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 771
AasI GACNNNNNNGTC 1 cut(s) 419
Acc65I GGTACC 1 cut(s) 447
AccB1I GGYRCC 3 cut(s) 79, 359, 447
AccB7I CCANNNNNTGG 1 cut(s) 331
AccBSI CCGCTC 1 cut(s) 371
AccI GTMKAC 2 cut(s) 527, 656
AciI CCGC 7 cut(s) 190, 336, 351, 354, 363, 369, 836
AclWI GGATC 1 cut(s) 26
AcoI YGGCCR 4 cut(s) 7, 333, 340, 379
AcyI GRCGYC 1 cut(s) 360
AfaI GTAC 4 cut(s) 113, 235, 449, 594
AfiI CCNNNNNNNGG 4 cut(s) 326, 331, 467, 823
AflIII ACRYGT 1 cut(s) 880
AgsI TTSAA 4 cut(s) 635, 652, 707, 803
AluBI AGCT 5 cut(s) 119, 164, 174, 590, 698
AluI AGCT 5 cut(s) 119, 164, 174, 590, 698
AlwI GGATC 1 cut(s) 26
AoxI GGCC 6 cut(s) 7, 72, 247, 333, 340, 379
ApeKI GCWGC 1 cut(s) 695
Asp718I GGTACC 1 cut(s) 447
AspLEI GCGC 3 cut(s) 104, 181, 362
AspS9I GGNCC 3 cut(s) 247, 298, 615
AsuC2I CCSGG 1 cut(s) 24
AvaII GGWCC 2 cut(s) 298, 615
BaeGI GKGCMC 1 cut(s) 84
BanI GGYRCC 3 cut(s) 79, 359, 447
BanII GRGCYC 1 cut(s) 24
BbvI GCAGC 1 cut(s) 707
BccI CCATC 2 cut(s) 411, 421
BcnI CCSGG 1 cut(s) 24
BfmI CTRYAG 1 cut(s) 262
BfoI RGCGCY 1 cut(s) 363
BisI GCNGC 6 cut(s) 190, 336, 351, 354, 363, 696
BlsI GCNGC 6 cut(s) 191, 337, 352, 355, 364, 697
Bme1390I CCNGG 1 cut(s) 24
Bme18I GGWCC 2 cut(s) 298, 615
BmgT120I GGNCC 3 cut(s) 247, 298, 615
BmiI GGNNCC 4 cut(s) 81, 300, 361, 449
BmrFI CCNGG 1 cut(s) 24
BmsI GCATC 2 cut(s) 430, 900
Bpu10I CCTNAGC 1 cut(s) 611
BpuEI CTTGAG 1 cut(s) 38
BpuMI CCSGG 1 cut(s) 24
BsaAI YACGTR 1 cut(s) 596
BsaHI GRCGYC 1 cut(s) 360
BsaJI CCNNGG 4 cut(s) 44, 75, 325, 498
BsaWI WCCGGW 1 cut(s) 133
BsaXI ACNNNNNCTCC 2 cut(s) 774, 804
Bsc4I CCNNNNNNNGG 4 cut(s) 326, 331, 467, 823
Bse118I RCCGGY 3 cut(s) 338, 356, 381
Bse1I ACTGG 1 cut(s) 487
BseDI CCNNGG 4 cut(s) 44, 75, 325, 498
BseGI GGATG 1 cut(s) 55
BseLI CCNNNNNNNGG 4 cut(s) 326, 331, 467, 823
BseNI ACTGG 1 cut(s) 487
BseSI GKGCMC 1 cut(s) 84
BseX3I CGGCCG 1 cut(s) 7
BseXI GCAGC 1 cut(s) 707
Bsh1285I CGRYCG 1 cut(s) 10
BshFI GGCC 6 cut(s) 9, 74, 249, 335, 342, 381
BshNI GGYRCC 3 cut(s) 79, 359, 447
BsiEI CGRYCG 1 cut(s) 10
BsiSI CCGG 5 cut(s) 24, 134, 339, 357, 382
BslI CCNNNNNNNGG 4 cut(s) 326, 331, 467, 823
BsmI GAATGC 1 cut(s) 385
BsnI GGCC 6 cut(s) 9, 74, 249, 335, 342, 381
Bsp1286I GDGCHC 2 cut(s) 24, 84
Bsp143I GATC 3 cut(s) 3, 31, 818
Bsp19I CCATGG 2 cut(s) 325, 498
BspACI CCGC 7 cut(s) 190, 336, 351, 354, 363, 369, 836
BspANI GGCC 6 cut(s) 9, 74, 249, 335, 342, 381
BspLI GGNNCC 4 cut(s) 81, 300, 361, 449
BspPI GGATC 1 cut(s) 26
BspQI GCTCTTC 1 cut(s) 881
BspT107I GGYRCC 3 cut(s) 79, 359, 447
BsrBI CCGCTC 1 cut(s) 371
BsrFI RCCGGY 3 cut(s) 338, 356, 381
BsrI ACTGG 1 cut(s) 487
BssAI RCCGGY 3 cut(s) 338, 356, 381
BssECI CCNNGG 4 cut(s) 44, 75, 325, 498
BssMI GATC 3 cut(s) 3, 31, 818
BssNI GRCGYC 1 cut(s) 360
BssT1I CCWWGG 3 cut(s) 44, 325, 498
Bst6I CTCTTC 1 cut(s) 881
BstACI GRCGYC 1 cut(s) 360
BstBAI YACGTR 1 cut(s) 596
BstC8I GCNNGC 3 cut(s) 340, 358, 383
BstDEI CTNAG 5 cut(s) 115, 227, 611, 759, 849
BstDSI CCRYGG 2 cut(s) 325, 498
BstENI CCTNNNNNAGG 1 cut(s) 465
BstF5I GGATG 1 cut(s) 55
BstH2I RGCGCY 1 cut(s) 363
BstHHI GCGC 3 cut(s) 104, 181, 362
BstKTI GATC 3 cut(s) 6, 34, 821
BstMBI GATC 3 cut(s) 3, 31, 818
BstMCI CGRYCG 1 cut(s) 10
BstMWI GCNNNNNNNGC 5 cut(s) 101, 359, 362, 368, 754
BstNSI RCATGY 2 cut(s) 678, 884
BstSCI CCNGG 1 cut(s) 22
BstSFI CTRYAG 1 cut(s) 262
BstSLI GKGCMC 1 cut(s) 84
BstV1I GCAGC 1 cut(s) 707
BstX2I RGATCY 1 cut(s) 31
BstXI CCANNNNNNTGG 1 cut(s) 200
BstYI RGATCY 1 cut(s) 31
BstZI CGGCCG 1 cut(s) 7
BsuRI GGCC 6 cut(s) 9, 74, 249, 335, 342, 381
BtgI CCRYGG 2 cut(s) 325, 498
BtsCI GGATG 1 cut(s) 55
BtsI GCAGTG 2 cut(s) 156, 507
BtsIMutI CAGTG 2 cut(s) 156, 507
Cac8I GCNNGC 3 cut(s) 340, 358, 383
CfoI GCGC 3 cut(s) 104, 181, 362
Cfr10I RCCGGY 3 cut(s) 338, 356, 381
Cfr13I GGNCC 3 cut(s) 247, 298, 615
Csp6I GTAC 4 cut(s) 112, 234, 448, 593
CviAII CATG 8 cut(s) 326, 344, 374, 499, 563, 584, 675, 881
CviQI GTAC 4 cut(s) 112, 234, 448, 593
DdeI CTNAG 5 cut(s) 115, 227, 611, 759, 849
DinI GGCGCC 1 cut(s) 361
DpnI GATC 3 cut(s) 5, 33, 820
DpnII GATC 3 cut(s) 3, 31, 818
DrdI GACNNNNNNGTC 1 cut(s) 419
DseDI GACNNNNNNGTC 1 cut(s) 419
EaeI YGGCCR 4 cut(s) 7, 333, 340, 379
EagI CGGCCG 1 cut(s) 7
Eam1104I CTCTTC 1 cut(s) 881
EarI CTCTTC 1 cut(s) 881
EclXI CGGCCG 1 cut(s) 7
Eco130I CCWWGG 3 cut(s) 44, 325, 498
Eco24I GRGCYC 1 cut(s) 24
Eco32I GATATC 2 cut(s) 139, 516
Eco47I GGWCC 2 cut(s) 298, 615
Eco52I CGGCCG 1 cut(s) 7
EcoNI CCTNNNNNAGG 1 cut(s) 465
EcoRV GATATC 2 cut(s) 139, 516
EcoT14I CCWWGG 3 cut(s) 44, 325, 498
EcoT22I ATGCAT 1 cut(s) 680
EcoT38I GRGCYC 1 cut(s) 24
EgeI GGCGCC 1 cut(s) 361
EheI GGCGCC 1 cut(s) 361
ErhI CCWWGG 3 cut(s) 44, 325, 498
FaeI CATG 8 cut(s) 329, 347, 377, 502, 566, 587, 678, 884
FalI AAGNNNNNCTT 2 cut(s) 200, 232
FatI CATG 8 cut(s) 325, 343, 373, 498, 562, 583, 674, 880
FblI GTMKAC 2 cut(s) 527, 656
Fnu4HI GCNGC 6 cut(s) 190, 336, 351, 354, 363, 696
FokI GGATG 1 cut(s) 62
FriOI GRGCYC 1 cut(s) 24
Fsp4HI GCNGC 6 cut(s) 190, 336, 351, 354, 363, 696
GlaI GCGC 3 cut(s) 103, 180, 361
GluI GCNGC 6 cut(s) 190, 336, 351, 354, 363, 696
HaeII RGCGCY 1 cut(s) 363
HaeIII GGCC 6 cut(s) 9, 74, 249, 335, 342, 381
HapII CCGG 5 cut(s) 24, 134, 339, 357, 382
HhaI GCGC 3 cut(s) 104, 181, 362
Hin1I GRCGYC 1 cut(s) 360
Hin1II CATG 8 cut(s) 329, 347, 377, 502, 566, 587, 678, 884
Hin6I GCGC 3 cut(s) 102, 179, 360
HinP1I GCGC 3 cut(s) 102, 179, 360
HinfI GANTC 1 cut(s) 808
HpaII CCGG 5 cut(s) 24, 134, 339, 357, 382
Hpy166II GTNNAC 3 cut(s) 154, 528, 657
Hpy188I TCNGA 5 cut(s) 457, 818, 823, 896, 913
Hpy188III TCNNGA 3 cut(s) 17, 424, 874
Hpy8I GTNNAC 3 cut(s) 154, 528, 657
HpyAV CCTTC 1 cut(s) 880
HpyCH4IV ACGT 1 cut(s) 595
HpyCH4V TGCA 6 cut(s) 95, 126, 443, 566, 678, 695
HpyF10VI GCNNNNNNNGC 5 cut(s) 101, 359, 362, 368, 754
HpyF3I CTNAG 5 cut(s) 115, 227, 611, 759, 849
HpySE526I ACGT 1 cut(s) 595
Hsp92I GRCGYC 1 cut(s) 360
Hsp92II CATG 8 cut(s) 329, 347, 377, 502, 566, 587, 678, 884
HspAI GCGC 3 cut(s) 102, 179, 360
KasI GGCGCC 1 cut(s) 359
KpnI GGTACC 1 cut(s) 451
KroI GCCGGC 3 cut(s) 338, 356, 381
KroNI GCCGGC 3 cut(s) 340, 358, 383
Kzo9I GATC 3 cut(s) 3, 31, 818
LguI GCTCTTC 1 cut(s) 881
LmnI GCTCC 1 cut(s) 479
LpnPI CCDG 7 cut(s) 37, 147, 352, 370, 395, 429, 468
Lsp1109I GCAGC 1 cut(s) 707
LweI GCATC 2 cut(s) 430, 900
MaeII ACGT 1 cut(s) 595
MaeIII GTNAC 1 cut(s) 855
MalI GATC 3 cut(s) 5, 33, 820
MbiI CCGCTC 1 cut(s) 371
MboI GATC 3 cut(s) 3, 31, 818
MboII GAAGA 2 cut(s) 71, 898
MflI RGATCY 1 cut(s) 31
MhlI GDGCHC 2 cut(s) 24, 84
MluCI AATT 2 cut(s) 287, 621
Mly113I GGCGCC 1 cut(s) 360
Mph1103I ATGCAT 1 cut(s) 680
MreI CGCCGGCG 1 cut(s) 356
MroNI GCCGGC 3 cut(s) 338, 356, 381
MspI CCGG 5 cut(s) 24, 134, 339, 357, 382
MspR9I CCNGG 1 cut(s) 24
Mva1269I GAATGC 1 cut(s) 385
MwoI GCNNNNNNNGC 5 cut(s) 101, 359, 362, 368, 754
NaeI GCCGGC 3 cut(s) 340, 358, 383
NarI GGCGCC 1 cut(s) 360
NciI CCSGG 1 cut(s) 24
NcoI CCATGG 2 cut(s) 325, 498
NdeII GATC 3 cut(s) 3, 31, 818
NgoMIV GCCGGC 3 cut(s) 338, 356, 381
NlaIII CATG 8 cut(s) 329, 347, 377, 502, 566, 587, 678, 884
NlaIV GGNNCC 4 cut(s) 81, 300, 361, 449
NmeAIII GCCGAG 1 cut(s) 100
NsiI ATGCAT 1 cut(s) 680
NspI RCATGY 2 cut(s) 678, 884
PciI ACATGT 1 cut(s) 880
PciSI GCTCTTC 1 cut(s) 881
PctI GAATGC 1 cut(s) 385
PdiI GCCGGC 3 cut(s) 340, 358, 383
PfeI GAWTC 1 cut(s) 808
PflMI CCANNNNNTGG 1 cut(s) 331
PkrI GCNGC 6 cut(s) 191, 337, 352, 355, 364, 697
PluTI GGCGCC 1 cut(s) 363
Ppu21I YACGTR 1 cut(s) 596
PscI ACATGT 1 cut(s) 880
PsiI TTATAA 1 cut(s) 771
PspN4I GGNNCC 4 cut(s) 81, 300, 361, 449
PspPI GGNCC 3 cut(s) 247, 298, 615
PsuI RGATCY 1 cut(s) 31
RsaI GTAC 4 cut(s) 113, 235, 449, 594
RsaNI GTAC 4 cut(s) 112, 234, 448, 593
SapI GCTCTTC 1 cut(s) 881
SatI GCNGC 6 cut(s) 190, 336, 351, 354, 363, 696
Sau3AI GATC 3 cut(s) 3, 31, 818
Sau96I GGNCC 3 cut(s) 247, 298, 615
ScrFI CCNGG 1 cut(s) 24
SduI GDGCHC 2 cut(s) 24, 84
SfaNI GCATC 2 cut(s) 430, 900
SfcI CTRYAG 1 cut(s) 262
SfoI GGCGCC 1 cut(s) 361
SgrAI CRCCGGYG 1 cut(s) 356
SinI GGWCC 2 cut(s) 298, 615
SmlI CTYRAG 1 cut(s) 17
SmoI CTYRAG 1 cut(s) 17
Sse9I AATT 2 cut(s) 287, 621
SsiI CCGC 7 cut(s) 190, 336, 351, 354, 363, 369, 836
SspDI GGCGCC 1 cut(s) 359
StyD4I CCNGG 1 cut(s) 22
StyI CCWWGG 3 cut(s) 44, 325, 498
TaiI ACGT 1 cut(s) 598
TaqI TCGA 4 cut(s) 166, 220, 625, 873
TasI AATT 2 cut(s) 287, 621
TatI WGTACW 1 cut(s) 111
TauI GCSGC 5 cut(s) 192, 338, 353, 356, 365
TfiI GAWTC 1 cut(s) 808
TscAI CASTG 2 cut(s) 156, 514
TseI GCWGC 1 cut(s) 695
TspDTI ATGAA 4 cut(s) 600, 681, 715, 728
TspGWI ACGGA 3 cut(s) 24, 297, 607
TspRI CASTG 2 cut(s) 156, 514
Van91I CCANNNNNTGG 1 cut(s) 331
VpaK11BI GGWCC 2 cut(s) 298, 615
XagI CCTNNNNNAGG 1 cut(s) 465
XceI RCATGY 2 cut(s) 678, 884
XmiI GTMKAC 2 cut(s) 527, 656
Zsp2I ATGCAT 1 cut(s) 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.