transposition, RNA-mediated
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom13g24240 pycom520g00420 |
| rosa_chinensis | RchiOBHm_Chr1g0323091 RchiOBHm_Chr1g0367381 RchiOBHm_Chr2g0138291 RchiOBHm_Chr2g0148911 RchiOBHm_Chr2g0150891 RchiOBHm_Chr3g0491271 RchiOBHm_Chr4g0388351 RchiOBHm_Chr4g0435401 RchiOBHm_Chr5g0012171 RchiOBHm_Chr6g0282941 RchiOBHm_Chr7g0185711 RchiOBHm_Chr7g0186831 |
| rosa_multiflora | Rmu_sc0001998.1_g000012 |
| rosa_rugosa | Rorug07G0292400 |
| rosa_wichuraiana | Rw0G004540 Rw1G001620 Rw1G005040 Rw1G013360 Rw1G021570 Rw2G031870 Rw4G000690 Rw5G008320 Rw5G009260 Rw5G022080 Rw6G007050 Rw7G013470 Rw7G020380 Rw7G031880 Rw7G041220 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 28 |
| AccI | GTMKAC | 1 cut(s) | 89 |
| AclWI | GGATC | 2 cut(s) | 171, 184 |
| AdeI | CACNNNGTG | 1 cut(s) | 151 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 28 |
| AlwI | GGATC | 2 cut(s) | 171, 184 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 153 |
| AsuHPI | GGTGA | 1 cut(s) | 48 |
| AsuII | TTCGAA | 2 cut(s) | 119, 196 |
| BamHI | GGATCC | 1 cut(s) | 176 |
| BfmI | CTRYAG | 1 cut(s) | 90 |
| BmiI | GGNNCC | 1 cut(s) | 178 |
| BoxI | GACNNNNGTC | 1 cut(s) | 104 |
| Bpu14I | TTCGAA | 2 cut(s) | 119, 196 |
| BsaJI | CCNNGG | 1 cut(s) | 59 |
| BsaWI | WCCGGW | 1 cut(s) | 43 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 28 |
| Bse3DI | GCAATG | 1 cut(s) | 135 |
| BseDI | CCNNGG | 1 cut(s) | 59 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 28 |
| BseMI | GCAATG | 1 cut(s) | 135 |
| BsiSI | CCGG | 1 cut(s) | 44 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 28 |
| Bsp119I | TTCGAA | 2 cut(s) | 119, 196 |
| Bsp143I | GATC | 2 cut(s) | 132, 176 |
| Bsp19I | CCATGG | 1 cut(s) | 59 |
| BspLI | GGNNCC | 1 cut(s) | 178 |
| BspPI | GGATC | 2 cut(s) | 171, 184 |
| BspQI | GCTCTTC | 1 cut(s) | 147 |
| BspT104I | TTCGAA | 2 cut(s) | 119, 196 |
| BsrDI | GCAATG | 1 cut(s) | 135 |
| BssECI | CCNNGG | 1 cut(s) | 59 |
| BssMI | GATC | 2 cut(s) | 132, 176 |
| BssT1I | CCWWGG | 1 cut(s) | 59 |
| Bst4CI | ACNGT | 2 cut(s) | 73, 103 |
| Bst6I | CTCTTC | 1 cut(s) | 147 |
| BstBI | TTCGAA | 2 cut(s) | 119, 196 |
| BstDSI | CCRYGG | 1 cut(s) | 59 |
| BstKTI | GATC | 2 cut(s) | 135, 179 |
| BstMBI | GATC | 2 cut(s) | 132, 176 |
| BstNSI | RCATGY | 1 cut(s) | 194 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 104 |
| BstSFI | CTRYAG | 1 cut(s) | 90 |
| BstX2I | RGATCY | 1 cut(s) | 176 |
| BstYI | RGATCY | 1 cut(s) | 176 |
| BtgI | CCRYGG | 1 cut(s) | 59 |
| CviAII | CATG | 2 cut(s) | 60, 191 |
| DpnI | GATC | 2 cut(s) | 134, 178 |
| DpnII | GATC | 2 cut(s) | 132, 176 |
| DraIII | CACNNNGTG | 1 cut(s) | 151 |
| Eam1104I | CTCTTC | 1 cut(s) | 147 |
| EarI | CTCTTC | 1 cut(s) | 147 |
| Eco130I | CCWWGG | 1 cut(s) | 59 |
| Eco32I | GATATC | 1 cut(s) | 78 |
| EcoRV | GATATC | 1 cut(s) | 78 |
| EcoT14I | CCWWGG | 1 cut(s) | 59 |
| ErhI | CCWWGG | 1 cut(s) | 59 |
| FaeI | CATG | 2 cut(s) | 63, 194 |
| FaiI | YATR | 6 cut(s) | 61, 113, 167, 169, 182, 192 |
| FatI | CATG | 2 cut(s) | 59, 190 |
| FblI | GTMKAC | 1 cut(s) | 89 |
| HapII | CCGG | 1 cut(s) | 44 |
| Hin1II | CATG | 2 cut(s) | 63, 194 |
| HpaII | CCGG | 1 cut(s) | 44 |
| HphI | GGTGA | 1 cut(s) | 48 |
| Hpy166II | GTNNAC | 2 cut(s) | 56, 90 |
| Hpy188III | TCNNGA | 2 cut(s) | 146, 158 |
| Hpy8I | GTNNAC | 2 cut(s) | 56, 90 |
| HpyCH4III | ACNGT | 2 cut(s) | 73, 103 |
| HpyCH4V | TGCA | 1 cut(s) | 128 |
| Hsp92II | CATG | 2 cut(s) | 63, 194 |
| Kzo9I | GATC | 2 cut(s) | 132, 176 |
| LguI | GCTCTTC | 1 cut(s) | 147 |
| LpnPI | CCDG | 1 cut(s) | 57 |
| MaeIII | GTNAC | 1 cut(s) | 184 |
| MalI | GATC | 2 cut(s) | 134, 178 |
| MboI | GATC | 2 cut(s) | 132, 176 |
| MboII | GAAGA | 2 cut(s) | 108, 134 |
| MfeI | CAATTG | 1 cut(s) | 201 |
| MflI | RGATCY | 1 cut(s) | 176 |
| MluCI | AATT | 1 cut(s) | 201 |
| MnlI | CCTC | 1 cut(s) | 78 |
| MroXI | GAANNNNTTC | 1 cut(s) | 153 |
| MseI | TTAA | 1 cut(s) | 48 |
| MspI | CCGG | 1 cut(s) | 44 |
| MunI | CAATTG | 1 cut(s) | 201 |
| NcoI | CCATGG | 1 cut(s) | 59 |
| NdeII | GATC | 2 cut(s) | 132, 176 |
| NlaIII | CATG | 2 cut(s) | 63, 194 |
| NlaIV | GGNNCC | 1 cut(s) | 178 |
| NspI | RCATGY | 1 cut(s) | 194 |
| NspV | TTCGAA | 2 cut(s) | 119, 196 |
| PciSI | GCTCTTC | 1 cut(s) | 147 |
| PdmI | GAANNNNTTC | 1 cut(s) | 153 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 28 |
| PshAI | GACNNNNGTC | 1 cut(s) | 104 |
| PspN4I | GGNNCC | 1 cut(s) | 178 |
| PsuI | RGATCY | 1 cut(s) | 176 |
| SapI | GCTCTTC | 1 cut(s) | 147 |
| SaqAI | TTAA | 1 cut(s) | 48 |
| Sau3AI | GATC | 2 cut(s) | 132, 176 |
| SetI | ASST | 1 cut(s) | 89 |
| SfcI | CTRYAG | 1 cut(s) | 90 |
| SfuI | TTCGAA | 2 cut(s) | 119, 196 |
| SgeI | CNNG | 7 cut(s) | 56, 72, 85, 93, 158, 170, 203 |
| Sse9I | AATT | 1 cut(s) | 201 |
| StyI | CCWWGG | 1 cut(s) | 59 |
| TaaI | ACNGT | 2 cut(s) | 73, 103 |
| TaqI | TCGA | 2 cut(s) | 119, 196 |
| TasI | AATT | 1 cut(s) | 201 |
| Tru1I | TTAA | 1 cut(s) | 48 |
| Tru9I | TTAA | 1 cut(s) | 48 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 28 |
| XceI | RCATGY | 1 cut(s) | 194 |
| XmiI | GTMKAC | 1 cut(s) | 89 |
| XmnI | GAANNNNTTC | 1 cut(s) | 153 |