transposition, RNA-mediated
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom13g24240 pycom520g00420 |
| rosa_chinensis | RchiOBHm_Chr1g0323091 RchiOBHm_Chr1g0367381 RchiOBHm_Chr2g0138291 RchiOBHm_Chr2g0148911 RchiOBHm_Chr2g0150891 RchiOBHm_Chr3g0491271 RchiOBHm_Chr4g0388351 RchiOBHm_Chr4g0435401 RchiOBHm_Chr5g0012171 RchiOBHm_Chr6g0282941 RchiOBHm_Chr7g0185711 RchiOBHm_Chr7g0186831 |
| rosa_multiflora | Rmu_sc0001998.1_g000012 |
| rosa_rugosa | Rorug07G0292400 |
| rosa_wichuraiana | Rw0G004540 Rw1G001620 Rw1G005040 Rw1G013360 Rw1G021570 Rw2G031870 Rw4G000690 Rw5G008320 Rw5G009260 Rw5G022080 Rw6G007050 Rw7G013470 Rw7G020380 Rw7G031880 Rw7G041220 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 11 |
| AcuI | CTGAAG | 1 cut(s) | 65 |
| AoxI | GGCC | 1 cut(s) | 246 |
| ApeKI | GCWGC | 3 cut(s) | 86, 89, 98 |
| AsuHPI | GGTGA | 1 cut(s) | 159 |
| BbvI | GCAGC | 3 cut(s) | 98, 101, 110 |
| BisI | GCNGC | 3 cut(s) | 87, 90, 99 |
| BlsI | GCNGC | 3 cut(s) | 88, 91, 100 |
| BmsI | GCATC | 2 cut(s) | 83, 172 |
| BseGI | GGATG | 2 cut(s) | 74, 187 |
| BseMII | CTCAG | 2 cut(s) | 36, 253 |
| BseXI | GCAGC | 3 cut(s) | 98, 101, 110 |
| BseYI | CCCAGC | 1 cut(s) | 38 |
| BshFI | GGCC | 1 cut(s) | 248 |
| BslFI | GGGAC | 1 cut(s) | 34 |
| BsmFI | GGGAC | 1 cut(s) | 34 |
| BsnI | GGCC | 1 cut(s) | 248 |
| BspANI | GGCC | 1 cut(s) | 248 |
| BspCNI | CTCAG | 2 cut(s) | 35, 252 |
| Bst4CI | ACNGT | 1 cut(s) | 194 |
| BstDEI | CTNAG | 2 cut(s) | 22, 239 |
| BstF5I | GGATG | 2 cut(s) | 74, 187 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 39, 95, 98, 104 |
| BstV1I | GCAGC | 3 cut(s) | 98, 101, 110 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 139 |
| BsuRI | GGCC | 1 cut(s) | 248 |
| BtgZI | GCGATG | 1 cut(s) | 96 |
| BtsCI | GGATG | 2 cut(s) | 74, 187 |
| CviAII | CATG | 1 cut(s) | 70 |
| CviJI | RGCY | 4 cut(s) | 42, 107, 121, 248 |
| CviKI_1 | RGCY | 4 cut(s) | 42, 107, 121, 248 |
| DdeI | CTNAG | 2 cut(s) | 22, 239 |
| Eco147I | AGGCCT | 1 cut(s) | 248 |
| Eco57I | CTGAAG | 1 cut(s) | 65 |
| FaeI | CATG | 1 cut(s) | 73 |
| FaiI | YATR | 4 cut(s) | 31, 71, 212, 255 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 38, 70 |
| FaqI | GGGAC | 1 cut(s) | 34 |
| FatI | CATG | 1 cut(s) | 69 |
| FblI | GTMKAC | 1 cut(s) | 11 |
| Fnu4HI | GCNGC | 3 cut(s) | 87, 90, 99 |
| FokI | GGATG | 2 cut(s) | 61, 194 |
| Fsp4HI | GCNGC | 3 cut(s) | 87, 90, 99 |
| GluI | GCNGC | 3 cut(s) | 87, 90, 99 |
| GsaI | CCCAGC | 1 cut(s) | 42 |
| HaeIII | GGCC | 1 cut(s) | 248 |
| Hin1II | CATG | 1 cut(s) | 73 |
| HinfI | GANTC | 1 cut(s) | 8 |
| HphI | GGTGA | 1 cut(s) | 159 |
| Hpy166II | GTNNAC | 2 cut(s) | 12, 200 |
| Hpy188III | TCNNGA | 1 cut(s) | 24 |
| Hpy8I | GTNNAC | 2 cut(s) | 12, 200 |
| HpyAV | CCTTC | 1 cut(s) | 174 |
| HpyCH4III | ACNGT | 1 cut(s) | 194 |
| HpyCH4V | TGCA | 2 cut(s) | 33, 185 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 39, 95, 98, 104 |
| HpyF3I | CTNAG | 2 cut(s) | 22, 239 |
| Hsp92II | CATG | 1 cut(s) | 73 |
| LpnPI | CCDG | 5 cut(s) | 9, 50, 52, 56, 230 |
| Lsp1109I | GCAGC | 3 cut(s) | 98, 101, 110 |
| LweI | GCATC | 2 cut(s) | 83, 172 |
| MlyI | GAGTC | 1 cut(s) | 17 |
| MmeI | TCCRAC | 1 cut(s) | 159 |
| MnlI | CCTC | 1 cut(s) | 118 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 39, 95, 98, 104 |
| NlaIII | CATG | 1 cut(s) | 73 |
| PceI | AGGCCT | 1 cut(s) | 248 |
| PkrI | GCNGC | 3 cut(s) | 88, 91, 100 |
| PleI | GAGTC | 1 cut(s) | 16 |
| PpsI | GAGTC | 1 cut(s) | 16 |
| PspFI | CCCAGC | 1 cut(s) | 38 |
| SatI | GCNGC | 3 cut(s) | 87, 90, 99 |
| SchI | GAGTC | 1 cut(s) | 17 |
| SetI | ASST | 1 cut(s) | 69 |
| SfaNI | GCATC | 2 cut(s) | 83, 172 |
| SseBI | AGGCCT | 1 cut(s) | 248 |
| StuI | AGGCCT | 1 cut(s) | 248 |
| TaaI | ACNGT | 1 cut(s) | 194 |
| TseI | GCWGC | 3 cut(s) | 86, 89, 98 |
| TspDTI | ATGAA | 2 cut(s) | 162, 199 |
| XmiI | GTMKAC | 1 cut(s) | 11 |