Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0004874

Physical Location & Seq

Genomic Coordinates Forward (+)

29793248 .. 29794204

Gene Structure 957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G013360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGAACATAATTGGCACCCTTAAAGAGTTAAGGGAAACCGTTGAACACTTGAAATCCGAGTTTGAGATGAAAGATCTTGGAGAAACACGGTTTTTCCTTGGTTTAGAACTTGAGCACCCTTATACCCAAAAGATGCTTAGGCATTTCAACACTAACAAGATTAAGCCCTCAAGCACCCCAACGGTCGTCTGTAGTCTTGATCCAAAAAAGGATCCATTTCGTCCAAAAGATGACGACGAAGAAGTGCTAGAGGCAGAAGTGCCCTATCTAAGTGCAATAGGCGCATTATTGTACTTAGCACAATGCACAAGACCGGATATCTCATTCCCTGTGAACTTGCTAGCTAGATATAGCTCTGCGCCAACACGACGCCATTGGACTGGTTTTACTGATGCTGGGTACCTCTCTGACCCACAAAAAGGTCGCTCCCAAACTAGTTATGTTTTCACCATGGGAAAGACCGCGATATCTTGGAGGTCTACAAAGCAGACCTTAGTCACTACCTCTTCGAATCATGCAGAGATTATTGCTCTTCACGAAGCAGTTCGTGAATGTATATGGCTTAGGTCTATAGTTAGGCATGTTCGAAGCAATTGTGGTCTGAAGTCTACCACAGATGAGCCAACAAGCATTTATGAGGATAATGCTGCTAGCATTGAACAAATGAAGCAAGGCTACTTCAAAGGTGACAACACCAAGCACATATCGCCAAAATTCTTCTACAATCAGCAACAACAGAAGCTCATCAAGATCAAAGTGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

254

Amino Acids

29.08

Weight (kDa)

8.76

Isoelectric Point (pI)

43.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004874)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g24240 pycom520g00420
rosa_chinensis	RchiOBHm_Chr1g0323091 RchiOBHm_Chr1g0367381 RchiOBHm_Chr2g0138291 RchiOBHm_Chr2g0148911 RchiOBHm_Chr2g0150891 RchiOBHm_Chr3g0491271 RchiOBHm_Chr4g0388351 RchiOBHm_Chr4g0435401 RchiOBHm_Chr5g0012171 RchiOBHm_Chr6g0282941 RchiOBHm_Chr7g0185711 RchiOBHm_Chr7g0186831
rosa_multiflora	Rmu_sc0001998.1_g000012
rosa_rugosa	Rorug07G0292400
rosa_wichuraiana	Rw0G004540 Rw1G001620 Rw1G005040 Rw1G013360 Rw1G021570 Rw2G031870 Rw4G000690 Rw5G008320 Rw5G009260 Rw5G022080 Rw6G007050 Rw7G013470 Rw7G020380 Rw7G031880 Rw7G041220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	399
AccB1I	GGYRCC	2 cut(s)	14, 399
AccI	GTMKAC	2 cut(s)	479, 608
AccII	CGCG	1 cut(s)	464
AciI	CCGC	1 cut(s)	462
AclWI	GGATC	3 cut(s)	194, 206, 219
AcsI	RAATTY	1 cut(s)	713
AcuI	CTGAAG	1 cut(s)	623
AcyI	GRCGYC	1 cut(s)	370
AfaI	GTAC	2 cut(s)	293, 401
AfiI	CCNNNNNNNGG	1 cut(s)	419
AgsI	TTSAA	5 cut(s)	44, 52, 148, 659, 682
AhlI	ACTAGT	1 cut(s)	434
AluBI	AGCT	3 cut(s)	344, 354, 742
AluI	AGCT	3 cut(s)	344, 354, 742
Alw21I	GWGCWC	1 cut(s)	117
AlwI	GGATC	3 cut(s)	194, 206, 219
ApeKI	GCWGC	1 cut(s)	647
ApoI	RAATTY	1 cut(s)	713
Asp700I	GAANNNNTTC	1 cut(s)	543
Asp718I	GGTACC	1 cut(s)	399
AspLEI	GCGC	2 cut(s)	284, 361
AsuHPI	GGTGA	2 cut(s)	439, 698
AsuII	TTCGAA	2 cut(s)	509, 586
AsuNHI	GCTAGC	2 cut(s)	340, 650
BaeGI	GKGCMC	1 cut(s)	264
BamHI	GGATCC	1 cut(s)	211
BanI	GGYRCC	2 cut(s)	14, 399
BarI	GAAGNNNNNNTAC	2 cut(s)	659, 691
Bbv12I	GWGCWC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	634
BcuI	ACTAGT	1 cut(s)	434
BfaI	CTAG	6 cut(s)	248, 341, 345, 435, 651, 763
BfmI	CTRYAG	2 cut(s)	190, 570
BglII	AGATCT	1 cut(s)	73
BisI	GCNGC	1 cut(s)	648
BlsI	GCNGC	1 cut(s)	649
BmiI	GGNNCC	3 cut(s)	16, 213, 401
BmsI	GCATC	2 cut(s)	123, 382
BmtI	GCTAGC	2 cut(s)	344, 654
BoxI	GACNNNNGTC	1 cut(s)	494
Bpu10I	CCTNAGC	2 cut(s)	137, 563
Bpu14I	TTCGAA	2 cut(s)	509, 586
BpuEI	CTTGAG	2 cut(s)	131, 154
BsaHI	GRCGYC	1 cut(s)	370
BsaJI	CCNNGG	2 cut(s)	97, 450
BsaWI	WCCGGW	1 cut(s)	313
Bsc4I	CCNNNNNNNGG	1 cut(s)	419
Bse1I	ACTGG	1 cut(s)	385
BseDI	CCNNGG	2 cut(s)	97, 450
BseLI	CCNNNNNNNGG	1 cut(s)	419
BseNI	ACTGG	1 cut(s)	385
BseSI	GKGCMC	1 cut(s)	264
BseXI	GCAGC	1 cut(s)	634
BseYI	CCCAGC	1 cut(s)	395
Bsh1236I	CGCG	1 cut(s)	464
Bsh1285I	CGRYCG	1 cut(s)	186
BshNI	GGYRCC	2 cut(s)	14, 399
BsiEI	CGRYCG	1 cut(s)	186
BsiHKAI	GWGCWC	1 cut(s)	117
BsiSI	CCGG	1 cut(s)	314
BslI	CCNNNNNNNGG	1 cut(s)	419
Bsp119I	TTCGAA	2 cut(s)	509, 586
Bsp1286I	GDGCHC	2 cut(s)	117, 264
Bsp143I	GATC	4 cut(s)	73, 199, 211, 750
Bsp19I	CCATGG	1 cut(s)	450
BspACI	CCGC	1 cut(s)	462
BspFNI	CGCG	1 cut(s)	464
BspLI	GGNNCC	3 cut(s)	16, 213, 401
BspOI	GCTAGC	2 cut(s)	344, 654
BspPI	GGATC	3 cut(s)	194, 206, 219
BspQI	GCTCTTC	1 cut(s)	537
BspT104I	TTCGAA	2 cut(s)	509, 586
BspT107I	GGYRCC	2 cut(s)	14, 399
BsrI	ACTGG	1 cut(s)	385
BssECI	CCNNGG	2 cut(s)	97, 450
BssMI	GATC	4 cut(s)	73, 199, 211, 750
BssNI	GRCGYC	1 cut(s)	370
BssT1I	CCWWGG	2 cut(s)	97, 450
Bst4CI	ACNGT	3 cut(s)	40, 90, 184
Bst6I	CTCTTC	2 cut(s)	511, 537
BstACI	GRCGYC	1 cut(s)	370
BstBI	TTCGAA	2 cut(s)	509, 586
BstC8I	GCNNGC	2 cut(s)	342, 652
BstDEI	CTNAG	5 cut(s)	137, 269, 295, 493, 563
BstDSI	CCRYGG	1 cut(s)	450
BstFNI	CGCG	1 cut(s)	464
BstHHI	GCGC	2 cut(s)	284, 361
BstKTI	GATC	4 cut(s)	76, 202, 214, 753
BstMBI	GATC	4 cut(s)	73, 199, 211, 750
BstMCI	CGRYCG	1 cut(s)	186
BstMWI	GCNNNNNNNGC	2 cut(s)	281, 706
BstNSI	RCATGY	1 cut(s)	584
BstPAI	GACNNNNGTC	1 cut(s)	494
BstSFI	CTRYAG	2 cut(s)	190, 570
BstSLI	GKGCMC	1 cut(s)	264
BstUI	CGCG	1 cut(s)	464
BstV1I	GCAGC	1 cut(s)	634
BstX2I	RGATCY	2 cut(s)	73, 211
BstXI	CCANNNNNNTGG	1 cut(s)	380
BstYI	RGATCY	2 cut(s)	73, 211
BtgI	CCRYGG	1 cut(s)	450
Cac8I	GCNNGC	2 cut(s)	342, 652
CfoI	GCGC	2 cut(s)	284, 361
CseI	GACGC	1 cut(s)	378
Csp6I	GTAC	2 cut(s)	292, 400
CviAII	CATG	3 cut(s)	451, 515, 581
CviJI	RGCY	7 cut(s)	166, 344, 354, 562, 622, 675, 742
CviKI_1	RGCY	7 cut(s)	166, 344, 354, 562, 622, 675, 742
CviQI	GTAC	2 cut(s)	292, 400
DdeI	CTNAG	5 cut(s)	137, 269, 295, 493, 563
DpnI	GATC	4 cut(s)	75, 201, 213, 752
DpnII	GATC	4 cut(s)	73, 199, 211, 750
Eam1104I	CTCTTC	2 cut(s)	511, 537
EarI	CTCTTC	2 cut(s)	511, 537
Eco130I	CCWWGG	2 cut(s)	97, 450
Eco32I	GATATC	2 cut(s)	319, 468
Eco57I	CTGAAG	1 cut(s)	623
EcoRV	GATATC	2 cut(s)	319, 468
EcoT14I	CCWWGG	2 cut(s)	97, 450
ErhI	CCWWGG	2 cut(s)	97, 450
FaeI	CATG	3 cut(s)	454, 518, 584
FalI	AAGNNNNNCTT	2 cut(s)	476, 508
FatI	CATG	3 cut(s)	450, 514, 580
FblI	GTMKAC	2 cut(s)	479, 608
Fnu4HI	GCNGC	1 cut(s)	648
Fsp4HI	GCNGC	1 cut(s)	648
FspBI	CTAG	6 cut(s)	248, 341, 345, 435, 651, 763
GlaI	GCGC	2 cut(s)	283, 360
GluI	GCNGC	1 cut(s)	648
GsaI	CCCAGC	1 cut(s)	399
HapII	CCGG	1 cut(s)	314
HgaI	GACGC	1 cut(s)	378
HhaI	GCGC	2 cut(s)	284, 361
Hin1I	GRCGYC	1 cut(s)	370
Hin1II	CATG	3 cut(s)	454, 518, 584
Hin6I	GCGC	2 cut(s)	282, 359
HinP1I	GCGC	2 cut(s)	282, 359
HinfI	GANTC	1 cut(s)	511
HpaII	CCGG	1 cut(s)	314
HphI	GGTGA	2 cut(s)	439, 698
Hpy166II	GTNNAC	4 cut(s)	334, 480, 609, 760
Hpy188I	TCNGA	3 cut(s)	58, 409, 603
Hpy188III	TCNNGA	4 cut(s)	197, 536, 548, 748
Hpy8I	GTNNAC	4 cut(s)	334, 480, 609, 760
Hpy99I	CGWCG	2 cut(s)	239, 372
HpyCH4III	ACNGT	3 cut(s)	40, 90, 184
HpyCH4V	TGCA	3 cut(s)	275, 306, 518
HpyF10VI	GCNNNNNNNGC	2 cut(s)	281, 706
HpyF3I	CTNAG	5 cut(s)	137, 269, 295, 493, 563
Hsp92I	GRCGYC	1 cut(s)	370
Hsp92II	CATG	3 cut(s)	454, 518, 584
HspAI	GCGC	2 cut(s)	282, 359
KpnI	GGTACC	1 cut(s)	403
Kzo9I	GATC	4 cut(s)	73, 199, 211, 750
LguI	GCTCTTC	1 cut(s)	537
LmnI	GCTCC	1 cut(s)	431
LpnPI	CCDG	4 cut(s)	327, 342, 366, 381
Lsp1109I	GCAGC	1 cut(s)	634
LweI	GCATC	2 cut(s)	123, 382
MaeI	CTAG	6 cut(s)	248, 341, 345, 435, 651, 763
MaeIII	GTNAC	2 cut(s)	496, 686
MalI	GATC	4 cut(s)	75, 201, 213, 752
MboI	GATC	4 cut(s)	73, 199, 211, 750
MboII	GAAGA	4 cut(s)	251, 498, 524, 709
MfeI	CAATTG	1 cut(s)	592
MflI	RGATCY	2 cut(s)	73, 211
MhlI	GDGCHC	2 cut(s)	117, 264
MluCI	AATT	3 cut(s)	9, 592, 713
MnlI	CCTC	6 cut(s)	178, 244, 413, 468, 514, 631
MroXI	GAANNNNTTC	1 cut(s)	543
MseI	TTAA	3 cut(s)	21, 29, 162
MspI	CCGG	1 cut(s)	314
MunI	CAATTG	1 cut(s)	592
MvnI	CGCG	1 cut(s)	464
MwoI	GCNNNNNNNGC	2 cut(s)	281, 706
NcoI	CCATGG	1 cut(s)	450
NdeII	GATC	4 cut(s)	73, 199, 211, 750
NheI	GCTAGC	2 cut(s)	340, 650
NlaIII	CATG	3 cut(s)	454, 518, 584
NlaIV	GGNNCC	3 cut(s)	16, 213, 401
NmuCI	GTSAC	2 cut(s)	496, 686
NspI	RCATGY	1 cut(s)	584
NspV	TTCGAA	2 cut(s)	509, 586
PciSI	GCTCTTC	1 cut(s)	537
PdmI	GAANNNNTTC	1 cut(s)	543
PfeI	GAWTC	1 cut(s)	511
PkrI	GCNGC	1 cut(s)	649
PshAI	GACNNNNGTC	1 cut(s)	494
PspFI	CCCAGC	1 cut(s)	395
PspN4I	GGNNCC	3 cut(s)	16, 213, 401
PsuI	RGATCY	2 cut(s)	73, 211
RsaI	GTAC	2 cut(s)	293, 401
RsaNI	GTAC	2 cut(s)	292, 400
SapI	GCTCTTC	1 cut(s)	537
SaqAI	TTAA	3 cut(s)	21, 29, 162
SatI	GCNGC	1 cut(s)	648
Sau3AI	GATC	4 cut(s)	73, 199, 211, 750
SduI	GDGCHC	2 cut(s)	117, 264
SfaNI	GCATC	2 cut(s)	123, 382
SfcI	CTRYAG	2 cut(s)	190, 570
SfuI	TTCGAA	2 cut(s)	509, 586
SmlI	CTYRAG	2 cut(s)	110, 169
SmoI	CTYRAG	2 cut(s)	110, 169
SpeI	ACTAGT	1 cut(s)	434
Sse9I	AATT	3 cut(s)	9, 592, 713
SsiI	CCGC	1 cut(s)	462
SspMI	CTAG	6 cut(s)	248, 341, 345, 435, 651, 763
StyI	CCWWGG	2 cut(s)	97, 450
TaaI	ACNGT	3 cut(s)	40, 90, 184
TaqI	TCGA	2 cut(s)	509, 586
TasI	AATT	3 cut(s)	9, 592, 713
TatI	WGTACW	1 cut(s)	291
TfiI	GAWTC	1 cut(s)	511
Tru1I	TTAA	3 cut(s)	21, 29, 162
Tru9I	TTAA	3 cut(s)	21, 29, 162
TseFI	GTSAC	2 cut(s)	496, 686
TseI	GCWGC	1 cut(s)	647
Tsp45I	GTSAC	2 cut(s)	496, 686
TspDTI	ATGAA	3 cut(s)	17, 83, 680
XapI	RAATTY	1 cut(s)	713
XceI	RCATGY	1 cut(s)	584
XmiI	GTMKAC	2 cut(s)	479, 608
XmnI	GAANNNNTTC	1 cut(s)	543
XspI	CTAG	6 cut(s)	248, 341, 345, 435, 651, 763

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.