Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0001494

Physical Location & Seq

Genomic Coordinates Forward (+)

26718901 .. 26721871

Gene Structure 2971 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGATTTTTTACCAGTCTATCCTCACTTTTTTATTTTTATGGGTTTTGATTGTGGAAGAAATAAAGGGCCCAGATGGCCCAACAGCTAATAAATCAATAATCCTCTCCTTACCCACCATATGCAAACGTACACCCACCAACAGCCAATCCGAACCCGCATCCTATATACCCATGCCTTATAAACCACACTTTACCAAAACCCTAACCCTTCCGCGCCTGTATCACTTCGGAGCCGCATTAGGGTTGCACAGAGAGAGAACAATGGTGTCTGGCTCAGGTATCTGCGCAAAGCGCGTGGTGGTGGATGCCCGCCACCACATGCTCGGCCGCCTTTCTTCGATCCTGGCCAAGGAGCTGCTCAATGGGCAGAAGGTCGTGGTTGTTCGCGCGGAGGAGATCTGTATCTCCGGTGGGCTGGTGAGGCAGAAGATGAAGTACATGAGGTTCTTGCGTAAGCGCATGAACACTAAGCCTTCTCATGGTCCCATCCACTTCCGCGCCCCGGCTAAGATCCTCTGGCGCACCATACGTGGGATGATTCCCCATAAGACTAAGCGTGGTGCTGCTGCACTTGCTCGTCTGAAGGCATATGAGGGTATTCCACCTCCATATGACAAGACTAAGAGGATGGTCATTCCTGATGCACTCAAGGTCTTGAGGCTGCAAGCAGGACACAAGTACTGTTTGTTGGGCAAGCTTTCTTCAGAGGTTGGATGGAACCACTATGAGACCATCAAGGAGCTTGAGAACAAGAGAAAGGAGAGGGCCCAGGTTGCATATGAGAGGAAGAAACAGTTGAACAAACTGAGGGTGAAAGCAGAGAAGTCTGCTGAGGAGAAACTAGGGCCTCAGCTCGAGATCATTGCCCCCATTAAATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13

Protein Analysis

294

Amino Acids

33.39

Weight (kDa)

10.25

Isoelectric Point (pI)

46.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L13	PF00572	98 - 202	1.9e-20	Ribosomal protein L13

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07110 AT3G07110 AT3G24830 AT4G13170 AT5G48760 AT5G48760
fragaria_vesca	FvH4_1g23280 FvH4_1g23310 FvH4_4g15860 FvH4_4g15860
malus_domestica	MD00G1018900.v1.1 MD04G1008000.v1.1 MD05G1175100.v1.1 MD10G1164200.v1.1
prunus_persica	Prupe.1G006700_v2.0.a1 Prupe.1G006700_v2.0.a1 Prupe.8G202800_v2.0.a1
pyrus_communis	pycom04g00590 pycom05g16200 pycom10g14160 pycom13g29610
rosa_chinensis	RchiOBHm_Chr4g0415441 RchiOBHm_Chr6g0284831 RchiOBHm_Chr7g0231251
rosa_laevigata	RLG00000001424 RLG00000008070 RLG00000012712
rosa_multiflora	Rmu_sc0000686.1_g000013 Rmu_sc0003396.1_g000002 Rmu_sc0004076.1_g000027 Rmu_sc0004571.1_g000007 Rmu_sc0034036.1_g000003
rosa_roxburghii	Rroxscaffold_3G00229390 Rroxscaffold_5G00359200 Rroxscaffold_7G00184330
rosa_rugosa	Rorug04G0134300 Rorug06G0167300 Rorug07G0265500
rosa_samantha	Rh4AG194700 Rh4BG193400 Rh4CG205700 Rh4DG192400 Rh6AG280000 Rh6BG280100 Rh6DG275200 Rh7AG419100 Rh7BG394400 Rh7DG412800
rosa_wichuraiana	Rw4G016580 Rw6G024070 Rw7G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	180
Acc16I	TGCGCA	1 cut(s)	286
AccII	CGCG	5 cut(s)	214, 294, 387, 389, 498
AciI	CCGC	7 cut(s)	156, 212, 234, 310, 328, 389, 496
AclWI	GGATC	2 cut(s)	334, 505
AcoI	YGGCCR	2 cut(s)	325, 345
AcuI	CTGAAG	2 cut(s)	602, 687
AfaI	GTAC	3 cut(s)	130, 437, 680
AfiI	CCNNNNNNNGG	5 cut(s)	240, 349, 479, 502, 531
AgsI	TTSAA	1 cut(s)	799
AjnI	CCWGG	2 cut(s)	342, 768
AluBI	AGCT	5 cut(s)	86, 355, 697, 742, 853
AluI	AGCT	5 cut(s)	86, 355, 697, 742, 853
Alw26I	GTCTC	1 cut(s)	722
AlwI	GGATC	2 cut(s)	334, 505
Ama87I	CYCGRG	1 cut(s)	854
AoxI	GGCC	6 cut(s)	67, 76, 325, 345, 765, 845
ApaI	GGGCCC	2 cut(s)	71, 769
ApeKI	GCWGC	4 cut(s)	355, 563, 566, 661
AspLEI	GCGC	7 cut(s)	216, 287, 294, 389, 459, 500, 522
AspS9I	GGNCC	7 cut(s)	67, 68, 77, 482, 765, 766, 845
AsuC2I	CCSGG	1 cut(s)	503
AsuHPI	GGTGA	2 cut(s)	430, 823
AvaI	CYCGRG	1 cut(s)	854
AvaII	GGWCC	1 cut(s)	482
BaeGI	GKGCMC	2 cut(s)	71, 769
BalI	TGGCCA	1 cut(s)	347
BanII	GRGCYC	2 cut(s)	71, 769
BarI	GAAGNNNNNNTAC	2 cut(s)	419, 451
BbvCI	CCTCAGC	2 cut(s)	831, 849
BbvI	GCAGC	4 cut(s)	342, 550, 553, 648
BccI	CCATC	5 cut(s)	68, 494, 622, 708, 740
BcgI	CGANNNNNNTGC	2 cut(s)	845, 879
BciT130I	CCWGG	2 cut(s)	344, 770
BcnI	CCSGG	1 cut(s)	503
BcoDI	GTCTC	1 cut(s)	722
BfaI	CTAG	1 cut(s)	842
BglI	GCCNNNNNGGC	1 cut(s)	75
BglII	AGATCT	1 cut(s)	396
BisI	GCNGC	6 cut(s)	234, 328, 356, 564, 567, 662
BlsI	GCNGC	6 cut(s)	235, 329, 357, 565, 568, 663
BmcAI	AGTACT	1 cut(s)	680
Bme1390I	CCNGG	3 cut(s)	344, 503, 770
Bme18I	GGWCC	1 cut(s)	482
BmeT110I	CYCGRG	1 cut(s)	854
BmgT120I	GGNCC	7 cut(s)	67, 68, 77, 482, 765, 766, 845
BmiI	GGNNCC	5 cut(s)	69, 232, 484, 719, 767
BmrFI	CCNGG	3 cut(s)	344, 503, 770
BmsI	GCATC	3 cut(s)	167, 295, 631
Bpu10I	CCTNAGC	3 cut(s)	274, 831, 849
BpuEI	CTTGAG	3 cut(s)	632, 676, 764
BpuMI	CCSGG	1 cut(s)	503
BsaAI	YACGTR	1 cut(s)	530
BsaBI	GATNNNNATC	1 cut(s)	401
BsaI	GGTCTC	1 cut(s)	722
BsaJI	CCNNGG	3 cut(s)	348, 501, 768
BsaWI	WCCGGW	1 cut(s)	407
Bsc4I	CCNNNNNNNGG	5 cut(s)	240, 349, 479, 502, 531
Bse1I	ACTGG	1 cut(s)	13
Bse3DI	GCAATG	1 cut(s)	861
Bse8I	GATNNNNATC	1 cut(s)	401
BseBI	CCWGG	2 cut(s)	344, 770
BseDI	CCNNGG	3 cut(s)	348, 501, 768
BseGI	GGATG	6 cut(s)	158, 310, 486, 540, 633, 719
BseJI	GATNNNNATC	1 cut(s)	401
BseLI	CCNNNNNNNGG	5 cut(s)	240, 349, 479, 502, 531
BseMI	GCAATG	1 cut(s)	861
BseMII	CTCAG	4 cut(s)	288, 797, 822, 863
BseNI	ACTGG	1 cut(s)	13
BseRI	GAGGAG	2 cut(s)	407, 848
BseSI	GKGCMC	2 cut(s)	71, 769
BseX3I	CGGCCG	1 cut(s)	325
BseXI	GCAGC	4 cut(s)	342, 550, 553, 648
BsgI	GTGCAG	1 cut(s)	552
Bsh1236I	CGCG	5 cut(s)	214, 294, 387, 389, 498
Bsh1285I	CGRYCG	1 cut(s)	328
BshFI	GGCC	6 cut(s)	69, 78, 327, 347, 767, 847
BsiEI	CGRYCG	1 cut(s)	328
BsiHKCI	CYCGRG	1 cut(s)	854
BsiSI	CCGG	2 cut(s)	408, 503
BslFI	GGGAC	1 cut(s)	468
BslI	CCNNNNNNNGG	5 cut(s)	240, 349, 479, 502, 531
BsmAI	GTCTC	1 cut(s)	722
BsmFI	GGGAC	1 cut(s)	468
BsnI	GGCC	6 cut(s)	69, 78, 327, 347, 767, 847
Bso31I	GGTCTC	1 cut(s)	722
BsoBI	CYCGRG	1 cut(s)	854
Bsp120I	GGGCCC	2 cut(s)	67, 765
Bsp1286I	GDGCHC	2 cut(s)	71, 769
Bsp143I	GATC	4 cut(s)	339, 396, 510, 858
BspACI	CCGC	7 cut(s)	156, 212, 234, 310, 328, 389, 496
BspANI	GGCC	6 cut(s)	69, 78, 327, 347, 767, 847
BspCNI	CTCAG	4 cut(s)	287, 798, 823, 862
BspFNI	CGCG	5 cut(s)	214, 294, 387, 389, 498
BspLI	GGNNCC	5 cut(s)	69, 232, 484, 719, 767
BspPI	GGATC	2 cut(s)	334, 505
BspTNI	GGTCTC	1 cut(s)	722
BsrDI	GCAATG	1 cut(s)	861
BsrI	ACTGG	1 cut(s)	13
BssECI	CCNNGG	3 cut(s)	348, 501, 768
BssMI	GATC	4 cut(s)	339, 396, 510, 858
BssT1I	CCWWGG	1 cut(s)	348
Bst2UI	CCWGG	2 cut(s)	344, 770
Bst4CI	ACNGT	2 cut(s)	683, 795
BstBAI	YACGTR	1 cut(s)	530
BstC8I	GCNNGC	3 cut(s)	310, 666, 695
BstDEI	CTNAG	8 cut(s)	274, 468, 507, 552, 621, 806, 831, 849
BstENI	CCTNNNNNAGG	1 cut(s)	347
BstF5I	GGATG	6 cut(s)	158, 310, 486, 540, 633, 719
BstFNI	CGCG	5 cut(s)	214, 294, 387, 389, 498
BstHHI	GCGC	7 cut(s)	216, 287, 294, 389, 459, 500, 522
BstKTI	GATC	4 cut(s)	342, 399, 513, 861
BstMAI	GTCTC	1 cut(s)	722
BstMBI	GATC	4 cut(s)	339, 396, 510, 858
BstMCI	CGRYCG	1 cut(s)	328
BstMWI	GCNNNNNNNGC	6 cut(s)	75, 291, 364, 421, 572, 773
BstNI	CCWGG	2 cut(s)	344, 770
BstNSI	RCATGY	1 cut(s)	322
BstSCI	CCNGG	3 cut(s)	342, 501, 768
BstSLI	GKGCMC	2 cut(s)	71, 769
BstUI	CGCG	5 cut(s)	214, 294, 387, 389, 498
BstV1I	GCAGC	4 cut(s)	342, 550, 553, 648
BstX2I	RGATCY	2 cut(s)	396, 510
BstYI	RGATCY	2 cut(s)	396, 510
BstZI	CGGCCG	1 cut(s)	325
BsuRI	GGCC	6 cut(s)	69, 78, 327, 347, 767, 847
BtsCI	GGATG	6 cut(s)	158, 310, 486, 540, 633, 719
Cac8I	GCNNGC	3 cut(s)	310, 666, 695
CfoI	GCGC	7 cut(s)	216, 287, 294, 389, 459, 500, 522
Cfr13I	GGNCC	7 cut(s)	67, 68, 77, 482, 765, 766, 845
Csp6I	GTAC	3 cut(s)	129, 436, 679
CspCI	CAANNNNNGTGG	2 cut(s)	276, 311
CviAII	CATG	5 cut(s)	172, 319, 439, 460, 479
CviQI	GTAC	3 cut(s)	129, 436, 679
DdeI	CTNAG	8 cut(s)	274, 468, 507, 552, 621, 806, 831, 849
DpnI	GATC	4 cut(s)	341, 398, 512, 860
DpnII	GATC	4 cut(s)	339, 396, 510, 858
EaeI	YGGCCR	2 cut(s)	325, 345
EagI	CGGCCG	1 cut(s)	325
EclXI	CGGCCG	1 cut(s)	325
Eco130I	CCWWGG	1 cut(s)	348
Eco24I	GRGCYC	2 cut(s)	71, 769
Eco31I	GGTCTC	1 cut(s)	722
Eco47I	GGWCC	1 cut(s)	482
Eco52I	CGGCCG	1 cut(s)	325
Eco57I	CTGAAG	2 cut(s)	602, 687
Eco88I	CYCGRG	1 cut(s)	854
EcoNI	CCTNNNNNAGG	1 cut(s)	347
EcoO109I	RGGNCCY	3 cut(s)	67, 765, 845
EcoRII	CCWGG	2 cut(s)	342, 768
EcoT14I	CCWWGG	1 cut(s)	348
EcoT38I	GRGCYC	2 cut(s)	71, 769
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	5 cut(s)	175, 322, 442, 463, 482
FaqI	GGGAC	1 cut(s)	468
FatI	CATG	5 cut(s)	171, 318, 438, 459, 478
FauI	CCCGC	2 cut(s)	163, 317
FauNDI	CATATG	4 cut(s)	119, 589, 610, 778
Fnu4HI	GCNGC	6 cut(s)	234, 328, 356, 564, 567, 662
FokI	GGATG	6 cut(s)	145, 317, 473, 547, 640, 726
FriOI	GRGCYC	2 cut(s)	71, 769
Fsp4HI	GCNGC	6 cut(s)	234, 328, 356, 564, 567, 662
FspBI	CTAG	1 cut(s)	842
FspI	TGCGCA	1 cut(s)	286
GlaI	GCGC	7 cut(s)	215, 286, 293, 388, 458, 499, 521
GluI	GCNGC	6 cut(s)	234, 328, 356, 564, 567, 662
HaeIII	GGCC	6 cut(s)	69, 78, 327, 347, 767, 847
HapII	CCGG	2 cut(s)	408, 503
HhaI	GCGC	7 cut(s)	216, 287, 294, 389, 459, 500, 522
Hin1II	CATG	5 cut(s)	175, 322, 442, 463, 482
Hin6I	GCGC	7 cut(s)	214, 285, 292, 387, 457, 498, 520
HinP1I	GCGC	7 cut(s)	214, 285, 292, 387, 457, 498, 520
HindIII	AAGCTT	1 cut(s)	695
HinfI	GANTC	1 cut(s)	538
HpaII	CCGG	2 cut(s)	408, 503
HphI	GGTGA	2 cut(s)	430, 823
Hpy166II	GTNNAC	1 cut(s)	131
Hpy188I	TCNGA	4 cut(s)	151, 230, 582, 706
Hpy188III	TCNNGA	3 cut(s)	638, 655, 856
Hpy8I	GTNNAC	1 cut(s)	131
HpyAV	CCTTC	4 cut(s)	218, 364, 483, 577
HpyCH4III	ACNGT	2 cut(s)	683, 795
HpyCH4IV	ACGT	2 cut(s)	127, 529
HpyCH4V	TGCA	6 cut(s)	123, 247, 569, 644, 664, 776
HpyF10VI	GCNNNNNNNGC	6 cut(s)	75, 291, 364, 421, 572, 773
HpyF3I	CTNAG	8 cut(s)	274, 468, 507, 552, 621, 806, 831, 849
HpySE526I	ACGT	2 cut(s)	127, 529
Hsp92II	CATG	5 cut(s)	175, 322, 442, 463, 482
HspAI	GCGC	7 cut(s)	214, 285, 292, 387, 457, 498, 520
Kzo9I	GATC	4 cut(s)	339, 396, 510, 858
LmnI	GCTCC	3 cut(s)	230, 352, 739
Lsp1109I	GCAGC	4 cut(s)	342, 550, 553, 648
LweI	GCATC	3 cut(s)	167, 295, 631
MaeI	CTAG	1 cut(s)	842
MaeII	ACGT	2 cut(s)	127, 529
MalI	GATC	4 cut(s)	341, 398, 512, 860
MboI	GATC	4 cut(s)	339, 396, 510, 858
MboII	GAAGA	5 cut(s)	68, 327, 439, 693, 799
MflI	RGATCY	2 cut(s)	396, 510
MhlI	GDGCHC	2 cut(s)	71, 769
MlsI	TGGCCA	1 cut(s)	347
MluNI	TGGCCA	1 cut(s)	347
MmeI	TCCRAC	1 cut(s)	691
Mox20I	TGGCCA	1 cut(s)	347
MscI	TGGCCA	1 cut(s)	347
MseI	TTAA	1 cut(s)	873
Msp20I	TGGCCA	1 cut(s)	347
MspI	CCGG	2 cut(s)	408, 503
MspR9I	CCNGG	3 cut(s)	344, 503, 770
MvaI	CCWGG	2 cut(s)	344, 770
MvnI	CGCG	5 cut(s)	214, 294, 387, 389, 498
MwoI	GCNNNNNNNGC	6 cut(s)	75, 291, 364, 421, 572, 773
NciI	CCSGG	1 cut(s)	503
NdeI	CATATG	4 cut(s)	119, 589, 610, 778
NdeII	GATC	4 cut(s)	339, 396, 510, 858
NlaIII	CATG	5 cut(s)	175, 322, 442, 463, 482
NlaIV	GGNNCC	5 cut(s)	69, 232, 484, 719, 767
NmeAIII	GCCGAG	1 cut(s)	303
NsbI	TGCGCA	1 cut(s)	286
NspI	RCATGY	1 cut(s)	322
PaeR7I	CTCGAG	1 cut(s)	854
PfeI	GAWTC	1 cut(s)	538
PkrI	GCNGC	6 cut(s)	235, 329, 357, 565, 568, 663
Ppu21I	YACGTR	1 cut(s)	530
PsiI	TTATAA	1 cut(s)	180
Psp6I	CCWGG	2 cut(s)	342, 768
PspGI	CCWGG	2 cut(s)	342, 768
PspN4I	GGNNCC	5 cut(s)	69, 232, 484, 719, 767
PspOMI	GGGCCC	2 cut(s)	67, 765
PspPI	GGNCC	7 cut(s)	67, 68, 77, 482, 765, 766, 845
PsrI	GAACNNNNNNTAC	2 cut(s)	428, 460
PsuI	RGATCY	2 cut(s)	396, 510
RsaI	GTAC	3 cut(s)	130, 437, 680
RsaNI	GTAC	3 cut(s)	129, 436, 679
SaqAI	TTAA	1 cut(s)	873
SatI	GCNGC	6 cut(s)	234, 328, 356, 564, 567, 662
Sau3AI	GATC	4 cut(s)	339, 396, 510, 858
Sau96I	GGNCC	7 cut(s)	67, 68, 77, 482, 765, 766, 845
ScaI	AGTACT	1 cut(s)	680
ScrFI	CCNGG	3 cut(s)	344, 503, 770
SduI	GDGCHC	2 cut(s)	71, 769
SfaNI	GCATC	3 cut(s)	167, 295, 631
SfiI	GGCCNNNNNGGCC	1 cut(s)	75
Sfr274I	CTCGAG	1 cut(s)	854
SinI	GGWCC	1 cut(s)	482
SlaI	CTCGAG	1 cut(s)	854
SmlI	CTYRAG	4 cut(s)	647, 655, 743, 854
SmoI	CTYRAG	4 cut(s)	647, 655, 743, 854
SsiI	CCGC	7 cut(s)	156, 212, 234, 310, 328, 389, 496
SspI	AATATT	1 cut(s)	878
SspMI	CTAG	1 cut(s)	842
StyD4I	CCNGG	3 cut(s)	342, 501, 768
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	2 cut(s)	683, 795
TaiI	ACGT	2 cut(s)	130, 532
TaqI	TCGA	2 cut(s)	338, 855
TatI	WGTACW	2 cut(s)	435, 678
TauI	GCSGC	2 cut(s)	236, 330
TfiI	GAWTC	1 cut(s)	538
Tru1I	TTAA	1 cut(s)	873
Tru9I	TTAA	1 cut(s)	873
TseI	GCWGC	4 cut(s)	355, 563, 566, 661
TspDTI	ATGAA	2 cut(s)	446, 476
VpaK11BI	GGWCC	1 cut(s)	482
XagI	CCTNNNNNAGG	1 cut(s)	347
XceI	RCATGY	1 cut(s)	322
XhoI	CTCGAG	1 cut(s)	854
XspI	CTAG	1 cut(s)	842
ZrmI	AGTACT	1 cut(s)	680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.