Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0002314

Physical Location & Seq

Genomic Coordinates Forward (+)

6220992 .. 6222684

Gene Structure 1693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGCGCGGTATCAGCGGCACCAGCACCACCAGTGGAGAAAAGTTGAAAAGCCTTGTGCAGCCGCAGAGGAAGATGAAGAATCACAGACCACCACCTTTCTAATGGAGTTTGCAAACTCTGGTTACTATTACAAGAGAACGAGTCCCAAGCTTCTCTATCTCCTCTTCATCTCTTTCCTCTCTTGCAGCTTCCTCTTGGCCCCTCATCTTTTCAGCTCCACCACCACTTTCTCTCTCCTATATTCAACACCTGTGGAAGATATGGATGTAAATGTTCCCTTGTGTTCTTCAATCTCTAACGGAACTATATGTTGCGATCTCAGCAATATTCGTTCGGATATTTGTGTAATGAAAGGGGATGTAAGAACACACTCTGCTTCCTCCACTATCTTCCTCTACCGATCTACAGAAGGAAGTAGCTTCCAAAATCGTGTTTCTGATGTCGTTGAGGAAAATGAAGAAGATGAAACAGAGGAACTAGAGCATGAAAAGGTCAAACCGTATACACGGAAATGGGAAACAAGTGTCATGGACACCATTGATGAATTACAGCTCATTGCCAAGAAAGACACTCTAGGCATGCACCACCGGTGTGATGTGCAGCACGATGTTCCGGCAGTGTTTTTCTCAACTGGGGGATATACCGGTAATGTCTATCATGAATTTAATGATGGGATTATGCCATTGTTCATTACTTCCCAGCGTTTCAACAAGAAGGTTGTGTTTGTCATTCTCGATTACCATAATTGGTGGGTGATGAAATATGGTGACATTGTTTCTCAACTATCAGATTATCCACCTATAGACTTTAGTGGAGATACAAGAACTCATTGCTTCCCAGAGGTCACAGTTGGTTTGAGGATTCACGACGAGCTCACTGTGGATTCTTCACTGATGGAGGGAAATGTGGGCATTGTTGACTTTCGAAATCTTCTAGACCGAGCCTACTGGCCTCGAATTAAAAGTCTTATTGAAGACGAGGAACGGGAAGCACAGGAAAAGCTGTCTGCATCTTTGGCATCTAAAAGCTCTTTCGAACCTGAGAGTGAAGTGCAAGAAGATCAGTTCAGGAAGCCTAAACTGATCGATCATATCTCGAAATGGATCAAGAGCGATAACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

DUF563

Protein Analysis

375

Amino Acids

43.19

Weight (kDa)

5.12

Isoelectric Point (pI)

39.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002314)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41640 AT2G41640 AT2G41640 AT3G57380 AT3G57380 AT3G57380
fragaria_vesca	FvH4_6g23970 FvH4_6g24320
malus_domestica	MD00G1122300.v1.1 MD12G1075400.v1.1 MD12G1075900.v1.1 MD12G1211600.v1.1 MD14G1073900.v1.1 MD14G1074300.v1.1
prunus_persica	Prupe.7G055600_v2.0.a1 Prupe.7G055700_v2.0.a1
pyrus_communis	pycom12g06490 pycom12g06530 pycom14g06320
rosa_chinensis	RchiOBHm_Chr3g0483201 RchiOBHm_Chr3g0483241
rosa_laevigata	RLG00000023295 RLG00000023297 RLG00000023299
rosa_multiflora	Rmu_sc0000058.1_g000002 Rmu_sc0004790.1_g000011 Rmu_sc0007550.1_g000006 Rmu_sc0011066.1_g000001 Rmu_sc0026377.1_g000002
rosa_roxburghii	Rroxscaffold_6G00398530 Rroxscaffold_6G00398550
rosa_rugosa	Rorug03G0204900 Rorug03G0204900
rosa_samantha	Rh3AG253100 Rh3AG253300 Rh3BG290300 Rh3CG287100 Rh3CG287200 Rh3DG282700 Rh3DG282900
rosa_wichuraiana	Rw3G022900 Rw3G022910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	18
AccI	GTMKAC	1 cut(s)	503
AccII	CGCG	1 cut(s)	7
AciI	CCGC	3 cut(s)	7, 16, 63
AclWI	GGATC	1 cut(s)	1112
AcsI	RAATTY	1 cut(s)	662
AgeI	ACCGGT	2 cut(s)	588, 644
AgsI	TTSAA	5 cut(s)	47, 246, 291, 709, 974
AleI	CACNNNNGTG	1 cut(s)	591
AluBI	AGCT	8 cut(s)	151, 189, 216, 420, 553, 874, 1003, 1029
AluI	AGCT	8 cut(s)	151, 189, 216, 420, 553, 874, 1003, 1029
Alw21I	GWGCWC	1 cut(s)	876
AlwI	GGATC	1 cut(s)	1112
AoxI	GGCC	2 cut(s)	198, 950
ApeKI	GCWGC	3 cut(s)	59, 186, 601
ApoI	RAATTY	1 cut(s)	662
ArsI	GACNNNNNNTTYG	2 cut(s)	949, 981
AsiGI	ACCGGT	2 cut(s)	588, 644
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	199
AsuHPI	GGTGA	2 cut(s)	766, 779
AsuII	TTCGAA	2 cut(s)	925, 1035
BanI	GGYRCC	1 cut(s)	18
BanII	GRGCYC	1 cut(s)	876
BbsI	GAAGAC	1 cut(s)	981
Bbv12I	GWGCWC	1 cut(s)	876
BbvI	GCAGC	3 cut(s)	71, 198, 613
BccI	CCATC	2 cut(s)	665, 889
BfaI	CTAG	3 cut(s)	479, 575, 935
BfmI	CTRYAG	2 cut(s)	405, 801
BisI	GCNGC	5 cut(s)	17, 60, 63, 187, 602
BlsI	GCNGC	5 cut(s)	18, 61, 64, 188, 603
BmgT120I	GGNCC	1 cut(s)	199
BmiI	GGNNCC	2 cut(s)	20, 201
BmrI	ACTGGG	1 cut(s)	642
BmsI	GCATC	2 cut(s)	1019, 1028
BmuI	ACTGGG	1 cut(s)	642
BpiI	GAAGAC	1 cut(s)	981
Bpu14I	TTCGAA	2 cut(s)	925, 1035
Bsa29I	ATCGAT	1 cut(s)	1086
BsaWI	WCCGGW	2 cut(s)	588, 644
Bse118I	RCCGGY	2 cut(s)	588, 644
Bse1I	ACTGG	3 cut(s)	31, 637, 953
Bse3DI	GCAATG	2 cut(s)	555, 829
BseCI	ATCGAT	1 cut(s)	1086
BseGI	GGATG	2 cut(s)	271, 364
BseMI	GCAATG	2 cut(s)	555, 829
BseMII	CTCAG	2 cut(s)	334, 1032
BseNI	ACTGG	3 cut(s)	31, 637, 953
BseRI	GAGGAG	1 cut(s)	152
BseXI	GCAGC	3 cut(s)	71, 198, 613
BseYI	CCCAGC	1 cut(s)	699
BsgI	GTGCAG	2 cut(s)	78, 620
Bsh1236I	CGCG	1 cut(s)	7
BshFI	GGCC	2 cut(s)	200, 952
BshNI	GGYRCC	1 cut(s)	18
BshTI	ACCGGT	2 cut(s)	588, 644
BshVI	ATCGAT	1 cut(s)	1086
BsiHKAI	GWGCWC	1 cut(s)	876
BsiSI	CCGG	3 cut(s)	589, 614, 645
BslFI	GGGAC	1 cut(s)	129
BsmFI	GGGAC	1 cut(s)	129
BsnI	GGCC	2 cut(s)	200, 952
Bsp119I	TTCGAA	2 cut(s)	925, 1035
Bsp1286I	GDGCHC	1 cut(s)	876
Bsp143I	GATC	6 cut(s)	316, 401, 1060, 1083, 1087, 1104
BspACI	CCGC	3 cut(s)	7, 16, 63
BspANI	GGCC	2 cut(s)	200, 952
BspCNI	CTCAG	2 cut(s)	333, 1033
BspDI	ATCGAT	1 cut(s)	1086
BspFNI	CGCG	1 cut(s)	7
BspHI	TCATGA	1 cut(s)	658
BspLI	GGNNCC	2 cut(s)	20, 201
BspPI	GGATC	1 cut(s)	1112
BspT104I	TTCGAA	2 cut(s)	925, 1035
BspT107I	GGYRCC	1 cut(s)	18
BsrDI	GCAATG	2 cut(s)	555, 829
BsrFI	RCCGGY	2 cut(s)	588, 644
BsrI	ACTGG	3 cut(s)	31, 637, 953
BssAI	RCCGGY	2 cut(s)	588, 644
BssMI	GATC	6 cut(s)	316, 401, 1060, 1083, 1087, 1104
BssNAI	GTATAC	1 cut(s)	504
Bst1107I	GTATAC	1 cut(s)	504
Bst4CI	ACNGT	3 cut(s)	501, 850, 880
Bst6I	CTCTTC	1 cut(s)	170
BstBI	TTCGAA	2 cut(s)	925, 1035
BstC8I	GCNNGC	1 cut(s)	581
BstDEI	CTNAG	2 cut(s)	320, 1041
BstF5I	GGATG	2 cut(s)	271, 364
BstFNI	CGCG	1 cut(s)	7
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	6 cut(s)	319, 404, 1063, 1086, 1090, 1107
BstMBI	GATC	6 cut(s)	316, 401, 1060, 1083, 1087, 1104
BstMWI	GCNNNNNNNGC	4 cut(s)	13, 22, 321, 1016
BstNSI	RCATGY	1 cut(s)	583
BstSFI	CTRYAG	2 cut(s)	405, 801
BstUI	CGCG	1 cut(s)	7
BstV1I	GCAGC	3 cut(s)	71, 198, 613
BstV2I	GAAGAC	1 cut(s)	981
BstZ17I	GTATAC	1 cut(s)	504
Bsu15I	ATCGAT	1 cut(s)	1086
BsuRI	GGCC	2 cut(s)	200, 952
BsuTUI	ATCGAT	1 cut(s)	1086
BtsCI	GGATG	2 cut(s)	271, 364
BtsI	GCAGTG	1 cut(s)	624
BtsIMutI	CAGTG	4 cut(s)	38, 624, 876, 890
Cac8I	GCNNGC	1 cut(s)	581
CciI	TCATGA	1 cut(s)	658
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	2 cut(s)	588, 644
Cfr13I	GGNCC	1 cut(s)	199
ClaI	ATCGAT	1 cut(s)	1086
CspAI	ACCGGT	2 cut(s)	588, 644
CspCI	CAANNNNNGTGG	2 cut(s)	234, 269
CviAII	CATG	4 cut(s)	485, 529, 580, 659
DdeI	CTNAG	2 cut(s)	320, 1041
DpnI	GATC	6 cut(s)	318, 403, 1062, 1085, 1089, 1106
DpnII	GATC	6 cut(s)	316, 401, 1060, 1083, 1087, 1104
Eam1104I	CTCTTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	170
Ecl136II	GAGCTC	1 cut(s)	874
Eco24I	GRGCYC	1 cut(s)	876
Eco53kI	GAGCTC	1 cut(s)	874
EcoICRI	GAGCTC	1 cut(s)	874
EcoT38I	GRGCYC	1 cut(s)	876
FaeI	CATG	4 cut(s)	488, 532, 583, 662
FaqI	GGGAC	1 cut(s)	129
FatI	CATG	4 cut(s)	484, 528, 579, 658
FblI	GTMKAC	1 cut(s)	503
Fnu4HI	GCNGC	5 cut(s)	17, 60, 63, 187, 602
FokI	GGATG	2 cut(s)	278, 371
FriOI	GRGCYC	1 cut(s)	876
Fsp4HI	GCNGC	5 cut(s)	17, 60, 63, 187, 602
FspBI	CTAG	3 cut(s)	479, 575, 935
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	5 cut(s)	17, 60, 63, 187, 602
GsaI	CCCAGC	1 cut(s)	703
HaeIII	GGCC	2 cut(s)	200, 952
HapII	CCGG	3 cut(s)	589, 614, 645
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	4 cut(s)	488, 532, 583, 662
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	919
HindII	GTYRAC	1 cut(s)	919
HindIII	AAGCTT	1 cut(s)	149
HinfI	GANTC	4 cut(s)	80, 142, 862, 884
HpaII	CCGG	3 cut(s)	589, 614, 645
HphI	GGTGA	2 cut(s)	766, 779
Hpy166II	GTNNAC	2 cut(s)	504, 919
Hpy188I	TCNGA	3 cut(s)	337, 439, 790
Hpy188III	TCNNGA	7 cut(s)	659, 734, 866, 935, 1069, 1096, 1108
Hpy8I	GTNNAC	2 cut(s)	504, 919
Hpy99I	CGWCG	1 cut(s)	872
HpyAV	CCTTC	2 cut(s)	404, 709
HpyCH4III	ACNGT	3 cut(s)	501, 850, 880
HpyCH4V	TGCA	7 cut(s)	59, 113, 186, 583, 601, 1010, 1054
HpyF10VI	GCNNNNNNNGC	4 cut(s)	13, 22, 321, 1016
HpyF3I	CTNAG	2 cut(s)	320, 1041
Hsp92II	CATG	4 cut(s)	488, 532, 583, 662
HspAI	GCGC	1 cut(s)	5
Kzo9I	GATC	6 cut(s)	316, 401, 1060, 1083, 1087, 1104
LmnI	GCTCC	1 cut(s)	221
Lsp1109I	GCAGC	3 cut(s)	71, 198, 613
LweI	GCATC	2 cut(s)	1019, 1028
MaeI	CTAG	3 cut(s)	479, 575, 935
MaeIII	GTNAC	3 cut(s)	122, 767, 844
MalI	GATC	6 cut(s)	318, 403, 1062, 1085, 1089, 1106
MboI	GATC	6 cut(s)	316, 401, 1060, 1083, 1087, 1104
MhlI	GDGCHC	1 cut(s)	876
MluCI	AATT	4 cut(s)	545, 662, 745, 957
MlyI	GAGTC	1 cut(s)	151
MseI	TTAA	2 cut(s)	666, 960
MslI	CAYNNNNRTG	2 cut(s)	511, 591
MspA1I	CMGCKG	1 cut(s)	16
MspI	CCGG	3 cut(s)	589, 614, 645
MvnI	CGCG	1 cut(s)	7
MwoI	GCNNNNNNNGC	4 cut(s)	13, 22, 321, 1016
NdeII	GATC	6 cut(s)	316, 401, 1060, 1083, 1087, 1104
NlaIII	CATG	4 cut(s)	488, 532, 583, 662
NlaIV	GGNNCC	2 cut(s)	20, 201
NmuCI	GTSAC	2 cut(s)	767, 844
NspI	RCATGY	1 cut(s)	583
NspV	TTCGAA	2 cut(s)	925, 1035
OliI	CACNNNNGTG	1 cut(s)	591
PaeI	GCATGC	1 cut(s)	583
PagI	TCATGA	1 cut(s)	658
PfeI	GAWTC	3 cut(s)	80, 862, 884
PinAI	ACCGGT	2 cut(s)	588, 644
PkrI	GCNGC	5 cut(s)	18, 61, 64, 188, 603
PleI	GAGTC	1 cut(s)	150
PpsI	GAGTC	1 cut(s)	150
Psp124BI	GAGCTC	1 cut(s)	876
PspFI	CCCAGC	1 cut(s)	699
PspN4I	GGNNCC	2 cut(s)	20, 201
PspPI	GGNCC	1 cut(s)	199
RseI	CAYNNNNRTG	2 cut(s)	511, 591
SacI	GAGCTC	1 cut(s)	876
SaqAI	TTAA	2 cut(s)	666, 960
SatI	GCNGC	5 cut(s)	17, 60, 63, 187, 602
Sau3AI	GATC	6 cut(s)	316, 401, 1060, 1083, 1087, 1104
Sau96I	GGNCC	1 cut(s)	199
SchI	GAGTC	1 cut(s)	151
SduI	GDGCHC	1 cut(s)	876
SfaNI	GCATC	2 cut(s)	1019, 1028
SfcI	CTRYAG	2 cut(s)	405, 801
SfuI	TTCGAA	2 cut(s)	925, 1035
SgrAI	CRCCGGYG	1 cut(s)	588
SmiMI	CAYNNNNRTG	2 cut(s)	511, 591
SphI	GCATGC	1 cut(s)	583
Sse9I	AATT	4 cut(s)	545, 662, 745, 957
SsiI	CCGC	3 cut(s)	7, 16, 63
SspI	AATATT	1 cut(s)	328
SspMI	CTAG	3 cut(s)	479, 575, 935
SstI	GAGCTC	1 cut(s)	876
TaaI	ACNGT	3 cut(s)	501, 850, 880
TaqI	TCGA	6 cut(s)	735, 925, 955, 1035, 1086, 1097
TaqII	GACCGA	1 cut(s)	954
TasI	AATT	4 cut(s)	545, 662, 745, 957
TauI	GCSGC	2 cut(s)	19, 65
TfiI	GAWTC	3 cut(s)	80, 862, 884
Tru1I	TTAA	2 cut(s)	666, 960
Tru9I	TTAA	2 cut(s)	666, 960
TscAI	CASTG	4 cut(s)	38, 624, 883, 897
TseFI	GTSAC	2 cut(s)	767, 844
TseI	GCWGC	3 cut(s)	59, 186, 601
Tsp45I	GTSAC	2 cut(s)	767, 844
TspGWI	ACGGA	2 cut(s)	315, 523
TspRI	CASTG	4 cut(s)	38, 624, 883, 897
XapI	RAATTY	1 cut(s)	662
XbaI	TCTAGA	1 cut(s)	934
XceI	RCATGY	1 cut(s)	583
XcmI	CCANNNNNNNNNTGG	1 cut(s)	100
XmiI	GTMKAC	1 cut(s)	503
XspI	CTAG	3 cut(s)	479, 575, 935

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.