Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0005778

Physical Location & Seq

Genomic Coordinates Forward (+)

19051717 .. 19053531

Gene Structure 1815 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGAGCTGAATTTGAACAGAGAGTCTGAAGCTGATGGCAGTGGCGGCGGCGGCGGCGTTTGTGGCGTCGGTGGTGGTGCTGATGGGTTCATCGACAGGAGCAGGGTGAGGATTTTACTCTGCGATAACAACGAGTACAGTTCGGAAGAGGTTTTCACGCTTCTTGTGAAATGCTCTTACCAGGTTATTTCCGTGAAGTCTCCTCGACAAGTGATTGATGCATTGAATGCAGAGGGGCCTGATATCGATCTCATACTTGCCGAAGTTGACCTTCCTATGCGCAAAGGCATGAAAATGTTGAAGTACATCACACGGGATAGAGAGTTAAGGCGCATTCCTGTAATCATGATGTCGGCACAAGATGAGGTCTCTACTGTTGTTAAGTGCTTGAAGCTTGGAGCAGCTGACTATCTTGTAAAGCCTTTACGCACTAATGAGCTTCTGAACTTGTGGACACACATGTGGAGAAGAAGGCGCATGCTTGGGCTAGCAGAGAAGAACCTTATAAATTATGTTGATCTGGTGATATCAGACCCTAGCCGATCTAATACGAACAGTACTACTTTATTCTCGGATGATACAGATGATAAATTGGGCAATCCAGAGACTGGAACCCCAGCTCCTGAGGAAGATAAGTTTATTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009892 GO:0009987 GO:0010031 GO:0010467 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032501 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048511 GO:0048519 GO:0050789 GO:0050794 GO:0050879 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

CCT Response_reg

Protein Analysis

216

Amino Acids

23.96

Weight (kDa)

5.0

Isoelectric Point (pI)

42.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	38 - 149	8.1e-19	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61380
fragaria_vesca	FvH4_5g14560
malus_domestica	MD06G1197300.v1.1 MD14G1204700.v1.1
prunus_persica	Prupe.5G197900_v2.0.a1 Prupe.5G198000_v2.0.a1
pyrus_communis	pycom06g17420 pycom06g17430 pycom14g16910
rosa_chinensis	RchiOBHm_Chr7g0182001
rosa_laevigata	RLG00000005156 RLG00000005161
rosa_multiflora	Rmu_co8226389.1_g000001 Rmu_sc0003511.1_g000044 Rmu_sc0017796.1_g000001 Rmu_ssc0000297.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271630
rosa_rugosa	Rorug06G0445000 Rorug06G0445100 Rorug06G0445300
rosa_samantha	Rh7AG047400 Rh7BG047400 Rh7BG047500 Rh7CG047700 Rh7DG046700
rosa_wichuraiana	Rw0G000460 Rw0G019690 Rw7G003930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	506
Acc16I	TGCGCA	1 cut(s)	281
AccB7I	CCANNNNNTGG	1 cut(s)	608
AciI	CCGC	4 cut(s)	45, 48, 51, 54
AcsI	RAATTY	1 cut(s)	10
AcuI	CTGAAG	1 cut(s)	48
AcyI	GRCGYC	1 cut(s)	66
AfaI	GTAC	3 cut(s)	137, 305, 559
AfiI	CCNNNNNNNGG	1 cut(s)	608
AflIII	ACRYGT	1 cut(s)	459
AgsI	TTSAA	4 cut(s)	16, 226, 301, 391
AjnI	CCWGG	1 cut(s)	180
AleI	CACNNNNGTG	1 cut(s)	460
AloI	GAACNNNNNNTCC	2 cut(s)	604, 636
AluBI	AGCT	6 cut(s)	7, 32, 394, 404, 439, 620
AluI	AGCT	6 cut(s)	7, 32, 394, 404, 439, 620
Alw26I	GTCTC	3 cut(s)	204, 373, 599
AlwNI	CAGNNNCTG	2 cut(s)	608, 623
AoxI	GGCC	1 cut(s)	236
ApeKI	GCWGC	1 cut(s)	401
ApoI	RAATTY	1 cut(s)	10
AspLEI	GCGC	3 cut(s)	282, 333, 477
AspS9I	GGNCC	1 cut(s)	236
AsuHPI	GGTGA	2 cut(s)	118, 535
AsuNHI	GCTAGC	1 cut(s)	487
AxyI	CCTNAGG	1 cut(s)	624
BbvI	GCAGC	1 cut(s)	413
BccI	CCATC	2 cut(s)	29, 77
BciT130I	CCWGG	1 cut(s)	182
BcoDI	GTCTC	3 cut(s)	204, 373, 599
BfaI	CTAG	2 cut(s)	488, 537
BisI	GCNGC	5 cut(s)	46, 49, 52, 55, 402
BlsI	GCNGC	5 cut(s)	47, 50, 53, 56, 403
BmcAI	AGTACT	1 cut(s)	559
Bme1390I	CCNGG	1 cut(s)	182
BmgT120I	GGNCC	1 cut(s)	236
BmiI	GGNNCC	2 cut(s)	237, 613
BmrFI	CCNGG	1 cut(s)	182
BmsI	GCATC	1 cut(s)	208
BmtI	GCTAGC	1 cut(s)	491
Bsa29I	ATCGAT	1 cut(s)	246
BsaBI	GATNNNNATC	1 cut(s)	246
BsaHI	GRCGYC	1 cut(s)	66
BsaI	GGTCTC	1 cut(s)	373
BsaXI	ACNNNNNCTCC	2 cut(s)	604, 634
Bsc4I	CCNNNNNNNGG	1 cut(s)	608
Bse1I	ACTGG	1 cut(s)	613
Bse21I	CCTNAGG	1 cut(s)	624
Bse8I	GATNNNNATC	1 cut(s)	246
BseBI	CCWGG	1 cut(s)	182
BseCI	ATCGAT	1 cut(s)	246
BseGI	GGATG	1 cut(s)	580
BseJI	GATNNNNATC	1 cut(s)	246
BseLI	CCNNNNNNNGG	1 cut(s)	608
BseMII	CTCAG	1 cut(s)	615
BseNI	ACTGG	1 cut(s)	613
BseRI	GAGGAG	1 cut(s)	192
BseXI	GCAGC	1 cut(s)	413
BseYI	CCCAGC	1 cut(s)	616
BshFI	GGCC	1 cut(s)	238
BshVI	ATCGAT	1 cut(s)	246
BslI	CCNNNNNNNGG	1 cut(s)	608
BsmAI	GTCTC	3 cut(s)	204, 373, 599
BsmI	GAATGC	2 cut(s)	232, 333
BsnI	GGCC	1 cut(s)	238
Bso31I	GGTCTC	1 cut(s)	373
Bsp143I	GATC	3 cut(s)	247, 517, 542
BspACI	CCGC	4 cut(s)	45, 48, 51, 54
BspANI	GGCC	1 cut(s)	238
BspCNI	CTCAG	1 cut(s)	616
BspDI	ATCGAT	1 cut(s)	246
BspHI	TCATGA	1 cut(s)	345
BspLI	GGNNCC	2 cut(s)	237, 613
BspOI	GCTAGC	1 cut(s)	491
BspTNI	GGTCTC	1 cut(s)	373
BsrI	ACTGG	1 cut(s)	613
BssMI	GATC	3 cut(s)	247, 517, 542
BssNI	GRCGYC	1 cut(s)	66
Bst2UI	CCWGG	1 cut(s)	182
Bst4CI	ACNGT	3 cut(s)	140, 376, 557
Bst6I	CTCTTC	1 cut(s)	141
BstACI	GRCGYC	1 cut(s)	66
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstC8I	GCNNGC	2 cut(s)	479, 489
BstDEI	CTNAG	1 cut(s)	624
BstF5I	GGATG	1 cut(s)	580
BstHHI	GCGC	3 cut(s)	282, 333, 477
BstKTI	GATC	3 cut(s)	250, 520, 545
BstMAI	GTCTC	3 cut(s)	204, 373, 599
BstMBI	GATC	3 cut(s)	247, 517, 542
BstMWI	GCNNNNNNNGC	5 cut(s)	45, 51, 54, 63, 227
BstNI	CCWGG	1 cut(s)	182
BstNSI	RCATGY	2 cut(s)	463, 481
BstSCI	CCNGG	1 cut(s)	180
BstV1I	GCAGC	1 cut(s)	413
Bsu15I	ATCGAT	1 cut(s)	246
Bsu36I	CCTNAGG	1 cut(s)	624
BsuRI	GGCC	1 cut(s)	238
BsuTUI	ATCGAT	1 cut(s)	246
BtsCI	GGATG	1 cut(s)	580
BtsI	GCAGTG	1 cut(s)	46
BtsIMutI	CAGTG	1 cut(s)	46
Cac8I	GCNNGC	2 cut(s)	479, 489
CaiI	CAGNNNCTG	2 cut(s)	608, 623
CciI	TCATGA	1 cut(s)	345
CfoI	GCGC	3 cut(s)	282, 333, 477
Cfr13I	GGNCC	1 cut(s)	236
ClaI	ATCGAT	1 cut(s)	246
CseI	GACGC	1 cut(s)	55
CsiI	ACCWGGT	1 cut(s)	180
Csp6I	GTAC	3 cut(s)	136, 304, 558
CviAII	CATG	4 cut(s)	289, 346, 460, 478
CviQI	GTAC	3 cut(s)	136, 304, 558
DdeI	CTNAG	1 cut(s)	624
DpnI	GATC	3 cut(s)	249, 519, 544
DpnII	GATC	3 cut(s)	247, 517, 542
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Eco31I	GGTCTC	1 cut(s)	373
Eco32I	GATATC	2 cut(s)	244, 528
Eco57I	CTGAAG	1 cut(s)	48
Eco81I	CCTNAGG	1 cut(s)	624
EcoO109I	RGGNCCY	1 cut(s)	236
EcoRII	CCWGG	1 cut(s)	180
EcoRV	GATATC	2 cut(s)	244, 528
EcoT22I	ATGCAT	1 cut(s)	223
FaeI	CATG	4 cut(s)	292, 349, 463, 481
FaiI	YATR	8 cut(s)	254, 278, 290, 347, 461, 479, 506, 513
FalI	AAGNNNNNCTT	2 cut(s)	255, 287
FatI	CATG	4 cut(s)	288, 345, 459, 477
Fnu4HI	GCNGC	5 cut(s)	46, 49, 52, 55, 402
FokI	GGATG	1 cut(s)	587
Fsp4HI	GCNGC	5 cut(s)	46, 49, 52, 55, 402
FspBI	CTAG	2 cut(s)	488, 537
FspI	TGCGCA	1 cut(s)	281
GlaI	GCGC	3 cut(s)	281, 332, 476
GluI	GCNGC	5 cut(s)	46, 49, 52, 55, 402
GsaI	CCCAGC	1 cut(s)	620
HaeIII	GGCC	1 cut(s)	238
HgaI	GACGC	1 cut(s)	55
HhaI	GCGC	3 cut(s)	282, 333, 477
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	4 cut(s)	292, 349, 463, 481
Hin6I	GCGC	3 cut(s)	280, 331, 475
HinP1I	GCGC	3 cut(s)	280, 331, 475
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HindIII	AAGCTT	1 cut(s)	392
HinfI	GANTC	1 cut(s)	23
HphI	GGTGA	2 cut(s)	118, 535
Hpy166II	GTNNAC	2 cut(s)	268, 453
Hpy188I	TCNGA	5 cut(s)	28, 145, 444, 532, 574
Hpy188III	TCNNGA	3 cut(s)	346, 602, 623
Hpy8I	GTNNAC	2 cut(s)	268, 453
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	2 cut(s)	281, 465
HpyCH4III	ACNGT	3 cut(s)	140, 376, 557
HpyCH4V	TGCA	2 cut(s)	221, 230
HpyF10VI	GCNNNNNNNGC	5 cut(s)	45, 51, 54, 63, 227
HpyF3I	CTNAG	1 cut(s)	624
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	4 cut(s)	292, 349, 463, 481
HspAI	GCGC	3 cut(s)	280, 331, 475
Kzo9I	GATC	3 cut(s)	247, 517, 542
LmnI	GCTCC	4 cut(s)	4, 99, 398, 625
Lsp1109I	GCAGC	1 cut(s)	413
LweI	GCATC	1 cut(s)	208
MabI	ACCWGGT	1 cut(s)	180
MaeI	CTAG	2 cut(s)	488, 537
MalI	GATC	3 cut(s)	249, 519, 544
MboI	GATC	3 cut(s)	247, 517, 542
MboII	GAAGA	4 cut(s)	158, 480, 508, 641
MluCI	AATT	3 cut(s)	10, 508, 590
MlyI	GAGTC	1 cut(s)	32
MnlI	CCTC	6 cut(s)	102, 142, 213, 226, 358, 619
Mph1103I	ATGCAT	1 cut(s)	223
MseI	TTAA	2 cut(s)	326, 381
MslI	CAYNNNNRTG	2 cut(s)	293, 460
MspA1I	CMGCKG	1 cut(s)	404
MspR9I	CCNGG	1 cut(s)	182
Mva1269I	GAATGC	2 cut(s)	232, 333
MvaI	CCWGG	1 cut(s)	182
MwoI	GCNNNNNNNGC	5 cut(s)	45, 51, 54, 63, 227
NdeII	GATC	3 cut(s)	247, 517, 542
NheI	GCTAGC	1 cut(s)	487
NlaIII	CATG	4 cut(s)	292, 349, 463, 481
NlaIV	GGNNCC	2 cut(s)	237, 613
NsbI	TGCGCA	1 cut(s)	281
NsiI	ATGCAT	1 cut(s)	223
NspI	RCATGY	2 cut(s)	463, 481
OliI	CACNNNNGTG	1 cut(s)	460
PaeI	GCATGC	1 cut(s)	481
PagI	TCATGA	1 cut(s)	345
PciI	ACATGT	1 cut(s)	459
PctI	GAATGC	2 cut(s)	232, 333
PflMI	CCANNNNNTGG	1 cut(s)	608
PkrI	GCNGC	5 cut(s)	47, 50, 53, 56, 403
PleI	GAGTC	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	31
PscI	ACATGT	1 cut(s)	459
PsiI	TTATAA	1 cut(s)	506
Psp6I	CCWGG	1 cut(s)	180
PspFI	CCCAGC	1 cut(s)	616
PspGI	CCWGG	1 cut(s)	180
PspN4I	GGNNCC	2 cut(s)	237, 613
PspPI	GGNCC	1 cut(s)	236
PstNI	CAGNNNCTG	2 cut(s)	608, 623
PvuII	CAGCTG	1 cut(s)	404
RsaI	GTAC	3 cut(s)	137, 305, 559
RsaNI	GTAC	3 cut(s)	136, 304, 558
RseI	CAYNNNNRTG	2 cut(s)	293, 460
SaqAI	TTAA	2 cut(s)	326, 381
SatI	GCNGC	5 cut(s)	46, 49, 52, 55, 402
Sau3AI	GATC	3 cut(s)	247, 517, 542
Sau96I	GGNCC	1 cut(s)	236
ScaI	AGTACT	1 cut(s)	559
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	1 cut(s)	182
SexAI	ACCWGGT	1 cut(s)	180
SfaNI	GCATC	1 cut(s)	208
SmiMI	CAYNNNNRTG	2 cut(s)	293, 460
SphI	GCATGC	1 cut(s)	481
Sse9I	AATT	3 cut(s)	10, 508, 590
SsiI	CCGC	4 cut(s)	45, 48, 51, 54
SspMI	CTAG	2 cut(s)	488, 537
StyD4I	CCNGG	1 cut(s)	180
TaaI	ACNGT	3 cut(s)	140, 376, 557
TaqI	TCGA	3 cut(s)	93, 205, 246
TasI	AATT	3 cut(s)	10, 508, 590
TatI	WGTACW	3 cut(s)	135, 303, 557
TauI	GCSGC	4 cut(s)	48, 51, 54, 57
Tru1I	TTAA	2 cut(s)	326, 381
Tru9I	TTAA	2 cut(s)	326, 381
TscAI	CASTG	1 cut(s)	46
TseI	GCWGC	1 cut(s)	401
TspDTI	ATGAA	2 cut(s)	79, 305
TspGWI	ACGGA	1 cut(s)	181
TspRI	CASTG	1 cut(s)	46
Van91I	CCANNNNNTGG	1 cut(s)	608
XapI	RAATTY	1 cut(s)	10
XceI	RCATGY	2 cut(s)	463, 481
XspI	CTAG	2 cut(s)	488, 537
ZrmI	AGTACT	1 cut(s)	559
Zsp2I	ATGCAT	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.