pycom14g18260

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0003632
Physical Location & Seq
Forward (+)
19966856 .. 19967420
565 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 327 bp
ATGGATGTGAGGAGAATAGTGGTAGTAGTTGAAGACGTGGAAGCAGCAAGAACAGCTCTTCGATGGGCACTCCACAACCTGGTTAGGTTTGGAGACTGGATAACTCTGGTTCATGTTTTTCCAACCTCAAGATCGATAAACAAGAACAAATCCAGGCTTCTCCGCTTGAAAGGCTTCCAGTTGACCCTCTCCTTCAAAGAAATCTGCAACACCTTCCCCAACACCAAGGTTGAAATGATTGTCACAGAAGGTGATCAAGATGGGAAGAAGATTGCAGCTTTGGTCAGAGAGATTGGGGCTTCAGCTCTTGTTCTTGGATTCGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

109

Amino Acids

12.2

Weight (kDa)

9.65

Isoelectric Point (pI)

41.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 4 - 106 1.2e-09 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 79
AciI CCGC 1 cut(s) 163
AcuI CTGAAG 1 cut(s) 285
AfiI CCNNNNNNNGG 1 cut(s) 79
AgsI TTSAA 4 cut(s) 32, 169, 196, 233
AjiI CACGTC 1 cut(s) 37
AjnI CCWGG 2 cut(s) 78, 152
AluBI AGCT 3 cut(s) 56, 278, 305
AluI AGCT 3 cut(s) 56, 278, 305
Alw26I GTCTC 1 cut(s) 87
ApeKI GCWGC 2 cut(s) 44, 275
Asp700I GAANNNNTTC 1 cut(s) 173
AsuHPI GGTGA 1 cut(s) 263
BaeGI GKGCMC 1 cut(s) 70
BbsI GAAGAC 1 cut(s) 39
BbvI GCAGC 2 cut(s) 56, 287
BccI CCATC 2 cut(s) 57, 254
BciT130I CCWGG 2 cut(s) 80, 154
BclI TGATCA 1 cut(s) 253
BcoDI GTCTC 1 cut(s) 87
BisI GCNGC 2 cut(s) 45, 276
BlsI GCNGC 2 cut(s) 46, 277
Bme1390I CCNGG 2 cut(s) 80, 154
BmgBI CACGTC 1 cut(s) 37
BmrFI CCNGG 2 cut(s) 80, 154
BpiI GAAGAC 1 cut(s) 39
BpuEI CTTGAG 1 cut(s) 112
Bsa29I ATCGAT 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 225
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse1I ACTGG 2 cut(s) 101, 178
BseBI CCWGG 2 cut(s) 80, 154
BseCI ATCGAT 1 cut(s) 134
BseDI CCNNGG 1 cut(s) 225
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 79
BseNI ACTGG 2 cut(s) 101, 178
BseRI GAGGAG 1 cut(s) 25
BseSI GKGCMC 1 cut(s) 70
BseXI GCAGC 2 cut(s) 56, 287
BshVI ATCGAT 1 cut(s) 134
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 1 cut(s) 87
Bsp1286I GDGCHC 1 cut(s) 70
Bsp143I GATC 2 cut(s) 131, 253
BspACI CCGC 1 cut(s) 163
BspDI ATCGAT 1 cut(s) 134
BspQI GCTCTTC 1 cut(s) 63
BsrI ACTGG 2 cut(s) 101, 178
BssECI CCNNGG 1 cut(s) 225
BssMI GATC 2 cut(s) 131, 253
BssT1I CCWWGG 1 cut(s) 225
Bst2UI CCWGG 2 cut(s) 80, 154
Bst6I CTCTTC 1 cut(s) 63
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 2 cut(s) 134, 256
BstMAI GTCTC 1 cut(s) 87
BstMBI GATC 2 cut(s) 131, 253
BstMWI GCNNNNNNNGC 2 cut(s) 53, 171
BstNI CCWGG 2 cut(s) 80, 154
BstSCI CCNGG 2 cut(s) 78, 152
BstSLI GKGCMC 1 cut(s) 70
BstV1I GCAGC 2 cut(s) 56, 287
BstV2I GAAGAC 1 cut(s) 39
Bsu15I ATCGAT 1 cut(s) 134
BsuTUI ATCGAT 1 cut(s) 134
BtrI CACGTC 1 cut(s) 37
BtsCI GGATG 1 cut(s) 10
ClaI ATCGAT 1 cut(s) 134
CsiI ACCWGGT 1 cut(s) 78
CviAII CATG 1 cut(s) 113
CviJI RGCY 6 cut(s) 56, 157, 174, 278, 299, 305
CviKI_1 RGCY 6 cut(s) 56, 157, 174, 278, 299, 305
DpnI GATC 2 cut(s) 133, 255
DpnII GATC 2 cut(s) 131, 253
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Eco130I CCWWGG 1 cut(s) 225
Eco57I CTGAAG 1 cut(s) 285
EcoRII CCWGG 2 cut(s) 78, 152
EcoT14I CCWWGG 1 cut(s) 225
ErhI CCWWGG 1 cut(s) 225
FaeI CATG 1 cut(s) 116
FaiI YATR 1 cut(s) 114
FatI CATG 1 cut(s) 112
FbaI TGATCA 1 cut(s) 253
Fnu4HI GCNGC 2 cut(s) 45, 276
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 2 cut(s) 45, 276
GluI GCNGC 2 cut(s) 45, 276
Hin1II CATG 1 cut(s) 116
HincII GTYRAC 1 cut(s) 183
HindII GTYRAC 1 cut(s) 183
HinfI GANTC 1 cut(s) 318
HphI GGTGA 1 cut(s) 263
Hpy166II GTNNAC 1 cut(s) 183
Hpy188I TCNGA 1 cut(s) 287
Hpy188III TCNNGA 2 cut(s) 129, 257
Hpy8I GTNNAC 1 cut(s) 183
HpyAV CCTTC 3 cut(s) 202, 223, 242
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 2 cut(s) 207, 275
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 171
HpySE526I ACGT 1 cut(s) 36
Hsp92II CATG 1 cut(s) 116
Ksp22I TGATCA 1 cut(s) 253
Kzo9I GATC 2 cut(s) 131, 253
LguI GCTCTTC 1 cut(s) 63
LpnPI CCDG 7 cut(s) 65, 82, 92, 92, 139, 166, 191
Lsp1109I GCAGC 2 cut(s) 56, 287
MabI ACCWGGT 1 cut(s) 78
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 1 cut(s) 241
MalI GATC 2 cut(s) 133, 255
MboI GATC 2 cut(s) 131, 253
MboII GAAGA 4 cut(s) 44, 50, 277, 280
MhlI GDGCHC 1 cut(s) 70
MmeI TCCRAC 1 cut(s) 146
MnlI CCTC 3 cut(s) 3, 136, 197
MroXI GAANNNNTTC 1 cut(s) 173
MseI TTAA 1 cut(s) 325
MspR9I CCNGG 2 cut(s) 80, 154
MvaI CCWGG 2 cut(s) 80, 154
MwoI GCNNNNNNNGC 2 cut(s) 53, 171
NdeII GATC 2 cut(s) 131, 253
NlaIII CATG 1 cut(s) 116
NmuCI GTSAC 1 cut(s) 241
PciSI GCTCTTC 1 cut(s) 63
PdmI GAANNNNTTC 1 cut(s) 173
PfeI GAWTC 1 cut(s) 318
PflMI CCANNNNNTGG 1 cut(s) 79
PkrI GCNGC 2 cut(s) 46, 277
Psp6I CCWGG 2 cut(s) 78, 152
PspGI CCWGG 2 cut(s) 78, 152
SapI GCTCTTC 1 cut(s) 63
SaqAI TTAA 1 cut(s) 325
SatI GCNGC 2 cut(s) 45, 276
Sau3AI GATC 2 cut(s) 131, 253
ScrFI CCNGG 2 cut(s) 80, 154
SduI GDGCHC 1 cut(s) 70
SexAI ACCWGGT 1 cut(s) 78
SmlI CTYRAG 1 cut(s) 127
SmoI CTYRAG 1 cut(s) 127
SsiI CCGC 1 cut(s) 163
StyD4I CCNGG 2 cut(s) 78, 152
StyI CCWWGG 1 cut(s) 225
TaiI ACGT 1 cut(s) 39
TaqI TCGA 3 cut(s) 61, 134, 321
TfiI GAWTC 1 cut(s) 318
Tru1I TTAA 1 cut(s) 325
Tru9I TTAA 1 cut(s) 325
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 2 cut(s) 44, 275
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 1 cut(s) 101
Van91I CCANNNNNTGG 1 cut(s) 79
XmnI GAANNNNTTC 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.