Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003361

Physical Location & Seq

Genomic Coordinates Reverse (-)

12627336 .. 12628710

Gene Structure 1375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g17820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGCTGCGAATGTGTTGGGCTACGCTGTTTTCGGAATGCCTCCTCCTTCGAGTGGAACATTGGGGCTGTCTTTGGTTCTGAACATTTTCAACAGCTATGGAACCACGGATGCTGCAAACGGAGATCTTGGTCTACACCGCCTGATTGAAGCGTTGAAACACATGTTTGCAATCCGAATGAATTTGGGCGACCCTGCTTTTGTTGATACAAGTGAATCCGCGTCTGCTATGCTTTCCCCATCTTTTGCAAAGAAAATTCGGCAGAAGATATTTGACAACACAACTTTCCCTCCAGAGTACTATTTGCACAGGTGGAGTCAGCTCAGAGATCATGGAACAAGTCATTTCTGCATAGTAGACGCAGATAGAAATGCAGTATCGGTTACAAGCACCGTAAATTACCCTTTTGGAGGTGGAGTGCTTTCTCCTTCTACTGGAATTATTCTCAACAACGAGATGGATGACTTCTCAACTCCGACAGAGATATCCCCCGACCATCTCCCTCCTGCTCCAGCAAATTTTATTGAACCGAACAAGAGACCTTTATCTTCCATGACTCCACTTATAATCACCAAGGACAATCAGTTGGCCGGGGTTCTTGGCGGTAGTGGTGGTATGAACATAATTCCTGCAGTAACCCAGGTTTTCCTGAATCATTTCGTAATGGGGATGGACCCTTTAGATGCAGTTCAAAGCCCAAGGATCTACCACAGGCTGATACCGAACATAGTTTGCTACGAGAACATGACTGTGATAGACGGTGATCACATTGAGCTTTCAGACGAAAGAAAGCTCTTCTTGCTAGAGCGGGGTCATAAGTTGCAGGCTAAGGCAGGGGGAGCCATCACTCAGCTCGTTGTTCAAACCCTTCGAAACCCTGCAAACATAGGCCGGAAAAGCGGAAAGAATTCTAATGAACAAATTTTTCACGGTAGACTCACCGCTGTAAGTGACCCGAGAAAGGACGGGAAGCCTGCAGCCGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002237 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005887 GO:0006082 GO:0006508 GO:0006518 GO:0006520 GO:0006536 GO:0006575 GO:0006749 GO:0006751 GO:0006790 GO:0006805 GO:0006807 GO:0006950 GO:0006979 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008242 GO:0009056 GO:0009064 GO:0009410 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009987 GO:0010033 GO:0010467 GO:0014070 GO:0016020 GO:0016021 GO:0016485 GO:0016740 GO:0016746 GO:0016755 GO:0016756 GO:0016787 GO:0019538 GO:0019752 GO:0031179 GO:0031224 GO:0031226 GO:0031638 GO:0032355 GO:0032496 GO:0032502 GO:0033554 GO:0033993 GO:0034097 GO:0034599 GO:0034612 GO:0034641 GO:0036374 GO:0042219 GO:0042221 GO:0043170 GO:0043171 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043648 GO:0044237 GO:0044238 GO:0044248 GO:0044273 GO:0044281 GO:0044421 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051604 GO:0051704 GO:0051707 GO:0051716 GO:0070011 GO:0070887 GO:0071466 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00430 ko00460 ko00480 ko00590 ko01100 map00430 map00460 map00480 map00590 map01100

Pfam Domains

Protein Families

G_glu_transpept

Protein Analysis

329

Amino Acids

35.6

Weight (kDa)

6.59

Isoelectric Point (pI)

46.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G_glu_transpept	PF01019	6 - 323	5.9e-86	Gamma-glutamyltranspeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29210 AT4G29210 AT4G39650
fragaria_vesca	FvH4_1g06610 FvH4_1g06610
malus_domestica	MD02G1069100.v1.1 MD15G1200700.v1.1
prunus_persica	Prupe.7G216500_v2.0.a1
pyrus_communis	pycom02g05470 pycom15g17820
rosa_chinensis	RchiOBHm_Chr1g0323641 RchiOBHm_Chr2g0092341 RchiOBHm_Chr2g0139001 RchiOBHm_Chr5g0064951
rosa_laevigata	RLG00000015286 RLG00000016301 RLG00000018659
rosa_multiflora	Rmu_sc0000461.1_g000012 Rmu_sc0000461.1_g000013 Rmu_sc0003289.1_g000009 Rmu_sc0006014.1_g000003 Rmu_sc0006014.1_g000004 Rmu_sc0010108.1_g000002
rosa_roxburghii	Rroxscaffold_3G00249440
rosa_rugosa	Rorug02G0025000 Rorug02G0025100
rosa_samantha	Rh1CG057300 Rh1DG061100 Rh2AG071000 Rh2BG070600 Rh2BG414200 Rh2CG072000 Rh2DG069500
rosa_wichuraiana	Rw0G021800 Rw2G006130 Rw2G032860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	566
AccBSI	CCGCTC	1 cut(s)	808
AccI	GTMKAC	3 cut(s)	133, 357, 934
AccII	CGCG	1 cut(s)	221
AciI	CCGC	6 cut(s)	139, 219, 603, 808, 900, 942
AclWI	GGATC	1 cut(s)	710
AcoI	YGGCCR	1 cut(s)	588
AcsI	RAATTY	5 cut(s)	181, 255, 517, 907, 921
AfaI	GTAC	1 cut(s)	299
AfiI	CCNNNNNNNGG	4 cut(s)	53, 410, 434, 961
AflIII	ACRYGT	1 cut(s)	162
AgsI	TTSAA	6 cut(s)	91, 149, 157, 527, 692, 863
AjnI	CCWGG	1 cut(s)	639
AluBI	AGCT	5 cut(s)	96, 322, 775, 793, 853
AluI	AGCT	5 cut(s)	96, 322, 775, 793, 853
Alw26I	GTCTC	1 cut(s)	532
AlwI	GGATC	1 cut(s)	710
Ama87I	CYCGRG	1 cut(s)	955
AoxI	GGCC	2 cut(s)	588, 889
ApeKI	GCWGC	3 cut(s)	5, 113, 977
ApoI	RAATTY	5 cut(s)	181, 255, 517, 907, 921
ArsI	GACNNNNNNTTYG	2 cut(s)	182, 214
Asp700I	GAANNNNTTC	3 cut(s)	86, 656, 907
AspS9I	GGNCC	1 cut(s)	673
AsuC2I	CCSGG	1 cut(s)	592
AsuHPI	GGTGA	3 cut(s)	562, 773, 931
AsuII	TTCGAA	1 cut(s)	871
AvaI	CYCGRG	1 cut(s)	955
AvaII	GGWCC	1 cut(s)	673
BbvI	GCAGC	1 cut(s)	100
BccI	CCATC	5 cut(s)	247, 451, 504, 664, 851
BceAI	ACGGC	1 cut(s)	965
BciT130I	CCWGG	1 cut(s)	641
BclI	TGATCA	1 cut(s)	763
BcnI	CCSGG	1 cut(s)	592
BcoDI	GTCTC	1 cut(s)	532
BfaI	CTAG	1 cut(s)	803
BfmI	CTRYAG	2 cut(s)	630, 975
BglII	AGATCT	1 cut(s)	124
BisI	GCNGC	3 cut(s)	6, 114, 978
BlsI	GCNGC	3 cut(s)	7, 115, 979
BmcAI	AGTACT	1 cut(s)	299
Bme1390I	CCNGG	2 cut(s)	592, 641
Bme18I	GGWCC	1 cut(s)	673
BmeT110I	CYCGRG	1 cut(s)	955
BmgT120I	GGNCC	1 cut(s)	673
BmiI	GGNNCC	3 cut(s)	103, 675, 841
BmrFI	CCNGG	2 cut(s)	592, 641
BmsI	GCATC	2 cut(s)	100, 673
BpmI	CTGGAG	2 cut(s)	276, 495
Bpu10I	CCTNAGC	1 cut(s)	828
Bpu14I	TTCGAA	1 cut(s)	871
BpuMI	CCSGG	1 cut(s)	592
BsaI	GGTCTC	1 cut(s)	532
BsaJI	CCNNGG	5 cut(s)	105, 573, 591, 639, 698
BsaXI	ACNNNNNCTCC	4 cut(s)	274, 304, 402, 432
Bsc4I	CCNNNNNNNGG	4 cut(s)	53, 410, 434, 961
Bse1I	ACTGG	1 cut(s)	439
BseBI	CCWGG	1 cut(s)	641
BseDI	CCNNGG	5 cut(s)	105, 573, 591, 639, 698
BseGI	GGATG	3 cut(s)	115, 466, 675
BseLI	CCNNNNNNNGG	4 cut(s)	53, 410, 434, 961
BseMII	CTCAG	2 cut(s)	337, 863
BseNI	ACTGG	1 cut(s)	439
BseRI	GAGGAG	1 cut(s)	33
BseXI	GCAGC	1 cut(s)	100
Bsh1236I	CGCG	1 cut(s)	221
BshFI	GGCC	2 cut(s)	590, 891
BsiHKCI	CYCGRG	1 cut(s)	955
BsiSI	CCGG	2 cut(s)	591, 892
BslI	CCNNNNNNNGG	4 cut(s)	53, 410, 434, 961
BsmAI	GTCTC	1 cut(s)	532
BsmI	GAATGC	1 cut(s)	42
BsnI	GGCC	2 cut(s)	590, 891
Bso31I	GGTCTC	1 cut(s)	532
BsoBI	CYCGRG	1 cut(s)	955
Bsp119I	TTCGAA	1 cut(s)	871
Bsp143I	GATC	4 cut(s)	124, 328, 702, 763
BspACI	CCGC	6 cut(s)	139, 219, 603, 808, 900, 942
BspANI	GGCC	2 cut(s)	590, 891
BspCNI	CTCAG	2 cut(s)	336, 862
BspFNI	CGCG	1 cut(s)	221
BspLI	GGNNCC	3 cut(s)	103, 675, 841
BspMAI	CTGCAG	2 cut(s)	634, 979
BspPI	GGATC	1 cut(s)	710
BspQI	GCTCTTC	1 cut(s)	800
BspT104I	TTCGAA	1 cut(s)	871
BspTNI	GGTCTC	1 cut(s)	532
BsrBI	CCGCTC	1 cut(s)	808
BsrI	ACTGG	1 cut(s)	439
BssECI	CCNNGG	5 cut(s)	105, 573, 591, 639, 698
BssMI	GATC	4 cut(s)	124, 328, 702, 763
BssT1I	CCWWGG	2 cut(s)	573, 698
Bst2UI	CCWGG	1 cut(s)	641
Bst4CI	ACNGT	4 cut(s)	394, 751, 761, 932
Bst6I	CTCTTC	1 cut(s)	800
BstBI	TTCGAA	1 cut(s)	871
BstC8I	GCNNGC	2 cut(s)	825, 975
BstDEI	CTNAG	3 cut(s)	323, 828, 849
BstDSI	CCRYGG	1 cut(s)	105
BstENI	CCTNNNNNAGG	1 cut(s)	408
BstF5I	GGATG	3 cut(s)	115, 466, 675
BstFNI	CGCG	1 cut(s)	221
BstKTI	GATC	4 cut(s)	127, 331, 705, 766
BstMAI	GTCTC	1 cut(s)	532
BstMBI	GATC	4 cut(s)	124, 328, 702, 763
BstMWI	GCNNNNNNNGC	3 cut(s)	799, 839, 897
BstNI	CCWGG	1 cut(s)	641
BstNSI	RCATGY	1 cut(s)	166
BstSCI	CCNGG	2 cut(s)	590, 639
BstSFI	CTRYAG	2 cut(s)	630, 975
BstUI	CGCG	1 cut(s)	221
BstV1I	GCAGC	1 cut(s)	100
BstX2I	RGATCY	2 cut(s)	124, 702
BstYI	RGATCY	2 cut(s)	124, 702
BsuRI	GGCC	2 cut(s)	590, 891
BtgI	CCRYGG	1 cut(s)	105
BtsCI	GGATG	3 cut(s)	115, 466, 675
Cac8I	GCNNGC	2 cut(s)	825, 975
Cfr13I	GGNCC	1 cut(s)	673
CseI	GACGC	2 cut(s)	210, 368
Csp6I	GTAC	1 cut(s)	298
CviAII	CATG	4 cut(s)	163, 332, 553, 745
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	3 cut(s)	323, 828, 849
DpnI	GATC	4 cut(s)	126, 330, 704, 765
DpnII	GATC	4 cut(s)	124, 328, 702, 763
EaeI	YGGCCR	1 cut(s)	588
Eam1104I	CTCTTC	1 cut(s)	800
EarI	CTCTTC	1 cut(s)	800
Eco130I	CCWWGG	2 cut(s)	573, 698
Eco31I	GGTCTC	1 cut(s)	532
Eco32I	GATATC	1 cut(s)	486
Eco47I	GGWCC	1 cut(s)	673
Eco88I	CYCGRG	1 cut(s)	955
EcoNI	CCTNNNNNAGG	1 cut(s)	408
EcoRI	GAATTC	1 cut(s)	907
EcoRII	CCWGG	1 cut(s)	639
EcoRV	GATATC	1 cut(s)	486
EcoT14I	CCWWGG	2 cut(s)	573, 698
ErhI	CCWWGG	2 cut(s)	573, 698
FaeI	CATG	4 cut(s)	166, 335, 556, 748
FalI	AAGNNNNNCTT	2 cut(s)	782, 814
FatI	CATG	4 cut(s)	162, 331, 552, 744
FauI	CCCGC	1 cut(s)	801
FbaI	TGATCA	1 cut(s)	763
FblI	GTMKAC	3 cut(s)	133, 357, 934
Fnu4HI	GCNGC	3 cut(s)	6, 114, 978
FokI	GGATG	3 cut(s)	122, 473, 682
Fsp4HI	GCNGC	3 cut(s)	6, 114, 978
FspBI	CTAG	1 cut(s)	803
GluI	GCNGC	3 cut(s)	6, 114, 978
GsuI	CTGGAG	2 cut(s)	276, 495
HaeIII	GGCC	2 cut(s)	590, 891
HapII	CCGG	2 cut(s)	591, 892
HgaI	GACGC	2 cut(s)	210, 368
Hin1II	CATG	4 cut(s)	166, 335, 556, 748
HinfI	GANTC	5 cut(s)	215, 316, 556, 652, 936
HpaII	CCGG	2 cut(s)	591, 892
HphI	GGTGA	3 cut(s)	562, 773, 931
Hpy166II	GTNNAC	3 cut(s)	134, 358, 935
Hpy188I	TCNGA	6 cut(s)	35, 81, 176, 326, 477, 781
Hpy188III	TCNNGA	2 cut(s)	293, 649
Hpy8I	GTNNAC	3 cut(s)	134, 358, 935
HpyAV	CCTTC	3 cut(s)	57, 438, 878
HpyCH4III	ACNGT	4 cut(s)	394, 751, 761, 932
HpyF10VI	GCNNNNNNNGC	3 cut(s)	799, 839, 897
HpyF3I	CTNAG	3 cut(s)	323, 828, 849
Hsp92II	CATG	4 cut(s)	166, 335, 556, 748
Ksp22I	TGATCA	1 cut(s)	763
Kzo9I	GATC	4 cut(s)	124, 328, 702, 763
LguI	GCTCTTC	1 cut(s)	800
LmnI	GCTCC	2 cut(s)	514, 839
Lsp1109I	GCAGC	1 cut(s)	100
LweI	GCATC	2 cut(s)	100, 673
MaeI	CTAG	1 cut(s)	803
MaeIII	GTNAC	3 cut(s)	382, 634, 950
MalI	GATC	4 cut(s)	126, 330, 704, 765
MbiI	CCGCTC	1 cut(s)	808
MboI	GATC	4 cut(s)	124, 328, 702, 763
MboII	GAAGA	3 cut(s)	277, 540, 787
MflI	RGATCY	2 cut(s)	124, 702
MluCI	AATT	8 cut(s)	181, 255, 397, 438, 517, 624, 907, 921
MlyI	GAGTC	3 cut(s)	325, 550, 930
MmeI	TCCRAC	1 cut(s)	500
MnlI	CCTC	5 cut(s)	51, 54, 300, 404, 513
MroXI	GAANNNNTTC	3 cut(s)	86, 656, 907
MslI	CAYNNNNRTG	1 cut(s)	749
MspA1I	CMGCKG	1 cut(s)	944
MspI	CCGG	2 cut(s)	591, 892
MspR9I	CCNGG	2 cut(s)	592, 641
Mva1269I	GAATGC	1 cut(s)	42
MvaI	CCWGG	1 cut(s)	641
MvnI	CGCG	1 cut(s)	221
MwoI	GCNNNNNNNGC	3 cut(s)	799, 839, 897
NciI	CCSGG	1 cut(s)	592
NdeII	GATC	4 cut(s)	124, 328, 702, 763
NlaIII	CATG	4 cut(s)	166, 335, 556, 748
NlaIV	GGNNCC	3 cut(s)	103, 675, 841
NmuCI	GTSAC	1 cut(s)	950
NspI	RCATGY	1 cut(s)	166
NspV	TTCGAA	1 cut(s)	871
PciI	ACATGT	1 cut(s)	162
PciSI	GCTCTTC	1 cut(s)	800
PctI	GAATGC	1 cut(s)	42
PdmI	GAANNNNTTC	3 cut(s)	86, 656, 907
PfeI	GAWTC	2 cut(s)	215, 652
PkrI	GCNGC	3 cut(s)	7, 115, 979
PleI	GAGTC	3 cut(s)	324, 550, 930
PpsI	GAGTC	3 cut(s)	324, 550, 930
PscI	ACATGT	1 cut(s)	162
PsiI	TTATAA	1 cut(s)	566
Psp6I	CCWGG	1 cut(s)	639
PspGI	CCWGG	1 cut(s)	639
PspN4I	GGNNCC	3 cut(s)	103, 675, 841
PspPI	GGNCC	1 cut(s)	673
PstI	CTGCAG	2 cut(s)	634, 979
PsuI	RGATCY	2 cut(s)	124, 702
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
RseI	CAYNNNNRTG	1 cut(s)	749
SapI	GCTCTTC	1 cut(s)	800
SatI	GCNGC	3 cut(s)	6, 114, 978
Sau3AI	GATC	4 cut(s)	124, 328, 702, 763
Sau96I	GGNCC	1 cut(s)	673
ScaI	AGTACT	1 cut(s)	299
SchI	GAGTC	3 cut(s)	325, 550, 930
ScrFI	CCNGG	2 cut(s)	592, 641
SetI	ASST	9 cut(s)	98, 314, 324, 415, 544, 645, 777, 795, 855
SfaNI	GCATC	2 cut(s)	100, 673
SfcI	CTRYAG	2 cut(s)	630, 975
SfuI	TTCGAA	1 cut(s)	871
SinI	GGWCC	1 cut(s)	673
SmiMI	CAYNNNNRTG	1 cut(s)	749
Sse9I	AATT	8 cut(s)	181, 255, 397, 438, 517, 624, 907, 921
SsiI	CCGC	6 cut(s)	139, 219, 603, 808, 900, 942
SspMI	CTAG	1 cut(s)	803
StyD4I	CCNGG	2 cut(s)	590, 639
StyI	CCWWGG	2 cut(s)	573, 698
TaaI	ACNGT	4 cut(s)	394, 751, 761, 932
TaqI	TCGA	2 cut(s)	50, 871
TasI	AATT	8 cut(s)	181, 255, 397, 438, 517, 624, 907, 921
TatI	WGTACW	1 cut(s)	297
TfiI	GAWTC	2 cut(s)	215, 652
TseFI	GTSAC	1 cut(s)	950
TseI	GCWGC	3 cut(s)	5, 113, 977
Tsp45I	GTSAC	1 cut(s)	950
TspDTI	ATGAA	3 cut(s)	194, 632, 930
TspGWI	ACGGA	2 cut(s)	122, 135
VpaK11BI	GGWCC	1 cut(s)	673
XagI	CCTNNNNNAGG	1 cut(s)	408
XapI	RAATTY	5 cut(s)	181, 255, 517, 907, 921
XceI	RCATGY	1 cut(s)	166
XmiI	GTMKAC	3 cut(s)	133, 357, 934
XmnI	GAANNNNTTC	3 cut(s)	86, 656, 907
XspI	CTAG	1 cut(s)	803
ZrmI	AGTACT	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.