Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003361

Physical Location & Seq

Genomic Coordinates Reverse (-)

56634288 .. 56635616

Gene Structure 1329 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50959

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGAGGATTTGAGGAATTACAAAGTGAATGTTACGGATGCCATGACTGCAAATGTGTTGGGATATACTATATCAGGAATGCCACCTCCTTCAGCTGGAACTTTGGGGCTTTCTATGGTGGATGCAGCAAACGGAGATCTTGGTCTGCATCGTCTGATTGAAGCATTGAAACACATGTTTGCAATCCGAATGAACTTGGGTGATCCTGCTTTTGTAGATACCCATGAATATGCATCTGATATGCTTTCTCCATCCTTTGCTAAGGAAATTCAGCAGAAGATATTTGACAACACAACTTTCCCACTAGAGTGGAGTCAGCTCAGAGATCACGGAACAAGTCATTTCTGCATAGTAGATGTAGACAGAAATGCGGTATCAATGACAATCACTGTAAACTATCCTTTTGGAGGTGGAGTACTCTCTCCTTCTACTGGAATTGTGCTCAACAATGAGATGGGTGACTTCTCAAGTCCCACTGACATATCGCCAGACCATCTCCCTCCTGCTCCGTCAAATTTCATTGAACCAATCAAAAGACCTTTATCTTCCATGACTCCTATTATAGTCACAAAGGATAATCAATTGGTTGGTGTGCTTGGAGGTAGTGGTGGTTTGAACATTATCCCAGCTGTAACTCAGGTGTTTATCAATTATTTCATATTGGGGATGGAACCTTTAGCCTCAGTTCAAAGTCCAAGGGTCTACCACAGGCTAATACCAAACATAGTGTCATATGAAAACTGGACTGTAATCGATGGAGATCATATCCGAGCTTTCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002237 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005887 GO:0006082 GO:0006508 GO:0006518 GO:0006520 GO:0006536 GO:0006575 GO:0006749 GO:0006751 GO:0006790 GO:0006805 GO:0006807 GO:0006950 GO:0006979 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008242 GO:0009056 GO:0009064 GO:0009410 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009987 GO:0010033 GO:0010467 GO:0014070 GO:0016020 GO:0016021 GO:0016485 GO:0016740 GO:0016746 GO:0016755 GO:0016756 GO:0016787 GO:0019538 GO:0019752 GO:0031179 GO:0031224 GO:0031226 GO:0031638 GO:0032355 GO:0032496 GO:0032502 GO:0033554 GO:0033993 GO:0034097 GO:0034599 GO:0034612 GO:0034641 GO:0036374 GO:0042219 GO:0042221 GO:0043170 GO:0043171 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043648 GO:0044237 GO:0044238 GO:0044248 GO:0044273 GO:0044281 GO:0044421 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051604 GO:0051704 GO:0051707 GO:0051716 GO:0070011 GO:0070887 GO:0071466 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00430 ko00460 ko00480 ko00590 ko01100 map00430 map00460 map00480 map00590 map01100

Pfam Domains

Protein Families

G_glu_transpept

Protein Analysis

260

Amino Acids

28.43

Weight (kDa)

5.12

Isoelectric Point (pI)

40.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G_glu_transpept	PF01019	2 - 247	1.5e-75	Gamma-glutamyltranspeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29210 AT4G29210 AT4G39650
fragaria_vesca	FvH4_1g06610 FvH4_1g06610
malus_domestica	MD02G1069100.v1.1 MD15G1200700.v1.1
prunus_persica	Prupe.7G216500_v2.0.a1
pyrus_communis	pycom02g05470 pycom15g17820
rosa_chinensis	RchiOBHm_Chr1g0323641 RchiOBHm_Chr2g0092341 RchiOBHm_Chr2g0139001 RchiOBHm_Chr5g0064951
rosa_laevigata	RLG00000015286 RLG00000016301 RLG00000018659
rosa_multiflora	Rmu_sc0000461.1_g000012 Rmu_sc0000461.1_g000013 Rmu_sc0003289.1_g000009 Rmu_sc0006014.1_g000003 Rmu_sc0006014.1_g000004 Rmu_sc0010108.1_g000002
rosa_roxburghii	Rroxscaffold_3G00249440
rosa_rugosa	Rorug02G0025000 Rorug02G0025100
rosa_samantha	Rh1CG057300 Rh1DG061100 Rh2AG071000 Rh2BG070600 Rh2BG414200 Rh2CG072000 Rh2DG069500
rosa_wichuraiana	Rw0G021800 Rw2G006130 Rw2G032860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	360, 702
AciI	CCGC	1 cut(s)	371
AclWI	GGATC	1 cut(s)	197
AcsI	RAATTY	2 cut(s)	267, 514
AcuI	CTGAAG	1 cut(s)	75
AfaI	GTAC	1 cut(s)	417
AfiI	CCNNNNNNNGG	3 cut(s)	95, 407, 431
AflIII	ACRYGT	1 cut(s)	174
AgsI	TTSAA	5 cut(s)	161, 169, 524, 616, 689
AleI	CACNNNNGTG	1 cut(s)	307
AluBI	AGCT	4 cut(s)	95, 319, 629, 773
AluI	AGCT	4 cut(s)	95, 319, 629, 773
Alw21I	GWGCWC	1 cut(s)	444
AlwI	GGATC	1 cut(s)	197
ApeKI	GCWGC	1 cut(s)	125
ApoI	RAATTY	2 cut(s)	267, 514
ArsI	GACNNNNNNTTYG	2 cut(s)	713, 745
AsuHPI	GGTGA	2 cut(s)	212, 470
Bbv12I	GWGCWC	1 cut(s)	444
BbvI	GCAGC	1 cut(s)	137
BccI	CCATC	5 cut(s)	259, 448, 501, 661, 749
BfaI	CTAG	1 cut(s)	305
BglII	AGATCT	1 cut(s)	136
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
BmcAI	AGTACT	1 cut(s)	417
BmiI	GGNNCC	1 cut(s)	672
BmsI	GCATC	4 cut(s)	28, 112, 157, 242
Bpu10I	CCTNAGC	1 cut(s)	261
BpuEI	CTTGAG	1 cut(s)	451
Bsa29I	ATCGAT	1 cut(s)	753
BsaBI	GATNNNNATC	1 cut(s)	759
BsaJI	CCNNGG	1 cut(s)	695
BsaXI	ACNNNNNCTCC	2 cut(s)	399, 429
Bsc4I	CCNNNNNNNGG	3 cut(s)	95, 407, 431
Bse1I	ACTGG	2 cut(s)	436, 746
Bse8I	GATNNNNATC	1 cut(s)	759
BseCI	ATCGAT	1 cut(s)	753
BseDI	CCNNGG	1 cut(s)	695
BseGI	GGATG	4 cut(s)	43, 127, 251, 672
BseJI	GATNNNNATC	1 cut(s)	759
BseLI	CCNNNNNNNGG	3 cut(s)	95, 407, 431
BseMII	CTCAG	3 cut(s)	334, 650, 696
BseNI	ACTGG	2 cut(s)	436, 746
BseXI	GCAGC	1 cut(s)	137
BseYI	CCCAGC	1 cut(s)	625
BshVI	ATCGAT	1 cut(s)	753
BsiHKAI	GWGCWC	1 cut(s)	444
BslFI	GGGAC	1 cut(s)	456
BslI	CCNNNNNNNGG	3 cut(s)	95, 407, 431
BsmFI	GGGAC	1 cut(s)	456
BsmI	GAATGC	1 cut(s)	84
Bsp1286I	GDGCHC	1 cut(s)	444
Bsp143I	GATC	4 cut(s)	136, 202, 325, 760
BspACI	CCGC	1 cut(s)	371
BspCNI	CTCAG	3 cut(s)	333, 649, 695
BspDI	ATCGAT	1 cut(s)	753
BspLI	GGNNCC	1 cut(s)	672
BspPI	GGATC	1 cut(s)	197
BsrI	ACTGG	2 cut(s)	436, 746
BssECI	CCNNGG	1 cut(s)	695
BssMI	GATC	4 cut(s)	136, 202, 325, 760
BssT1I	CCWWGG	1 cut(s)	695
Bst4CI	ACNGT	2 cut(s)	391, 748
BstDEI	CTNAG	4 cut(s)	261, 320, 636, 682
BstENI	CCTNNNNNAGG	1 cut(s)	405
BstF5I	GGATG	4 cut(s)	43, 127, 251, 672
BstKTI	GATC	4 cut(s)	139, 205, 328, 763
BstMBI	GATC	4 cut(s)	136, 202, 325, 760
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstNSI	RCATGY	1 cut(s)	178
BstV1I	GCAGC	1 cut(s)	137
BstX2I	RGATCY	1 cut(s)	136
BstXI	CCANNNNNNTGG	1 cut(s)	309
BstYI	RGATCY	1 cut(s)	136
Bsu15I	ATCGAT	1 cut(s)	753
BsuTUI	ATCGAT	1 cut(s)	753
BtsCI	GGATG	4 cut(s)	43, 127, 251, 672
BtsIMutI	CAGTG	2 cut(s)	387, 474
ClaI	ATCGAT	1 cut(s)	753
Csp6I	GTAC	1 cut(s)	416
CviAII	CATG	4 cut(s)	43, 175, 224, 550
CviJI	RGCY	7 cut(s)	95, 109, 319, 629, 680, 712, 773
CviKI_1	RGCY	7 cut(s)	95, 109, 319, 629, 680, 712, 773
CviQI	GTAC	1 cut(s)	416
DdeI	CTNAG	4 cut(s)	261, 320, 636, 682
DpnI	GATC	4 cut(s)	138, 204, 327, 762
DpnII	GATC	4 cut(s)	136, 202, 325, 760
Eco130I	CCWWGG	1 cut(s)	695
Eco57I	CTGAAG	1 cut(s)	75
EcoNI	CCTNNNNNAGG	1 cut(s)	405
EcoT14I	CCWWGG	1 cut(s)	695
EcoT22I	ATGCAT	1 cut(s)	235
ErhI	CCWWGG	1 cut(s)	695
FaeI	CATG	4 cut(s)	46, 178, 227, 553
FaqI	GGGAC	1 cut(s)	456
FatI	CATG	4 cut(s)	42, 174, 223, 549
FauNDI	CATATG	1 cut(s)	733
FblI	GTMKAC	2 cut(s)	360, 702
Fnu4HI	GCNGC	1 cut(s)	126
FokI	GGATG	4 cut(s)	50, 134, 238, 679
Fsp4HI	GCNGC	1 cut(s)	126
FspBI	CTAG	1 cut(s)	305
GluI	GCNGC	1 cut(s)	126
GsaI	CCCAGC	1 cut(s)	629
Hin1II	CATG	4 cut(s)	46, 178, 227, 553
HinfI	GANTC	2 cut(s)	313, 553
HphI	GGTGA	2 cut(s)	212, 470
Hpy166II	GTNNAC	3 cut(s)	361, 394, 703
Hpy188I	TCNGA	6 cut(s)	156, 188, 238, 323, 770, 779
Hpy188III	TCNNGA	1 cut(s)	75
Hpy8I	GTNNAC	3 cut(s)	361, 394, 703
HpyAV	CCTTC	2 cut(s)	99, 435
HpyCH4III	ACNGT	2 cut(s)	391, 748
HpyCH4V	TGCA	6 cut(s)	50, 125, 148, 182, 233, 348
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpyF3I	CTNAG	4 cut(s)	261, 320, 636, 682
Hsp92II	CATG	4 cut(s)	46, 178, 227, 553
Kzo9I	GATC	4 cut(s)	136, 202, 325, 760
LmnI	GCTCC	1 cut(s)	511
Lsp1109I	GCAGC	1 cut(s)	137
LweI	GCATC	4 cut(s)	28, 112, 157, 242
MaeI	CTAG	1 cut(s)	305
MaeIII	GTNAC	4 cut(s)	31, 458, 565, 631
MalI	GATC	4 cut(s)	138, 204, 327, 762
MboI	GATC	4 cut(s)	136, 202, 325, 760
MboII	GAAGA	2 cut(s)	289, 537
MfeI	CAATTG	1 cut(s)	581
MflI	RGATCY	1 cut(s)	136
MhlI	GDGCHC	1 cut(s)	444
MluCI	AATT	6 cut(s)	16, 267, 435, 514, 581, 649
MlyI	GAGTC	2 cut(s)	322, 547
MnlI	CCTC	6 cut(s)	6, 96, 401, 510, 593, 691
Mph1103I	ATGCAT	1 cut(s)	235
MslI	CAYNNNNRTG	2 cut(s)	228, 307
MspA1I	CMGCKG	2 cut(s)	95, 629
MunI	CAATTG	1 cut(s)	581
Mva1269I	GAATGC	1 cut(s)	84
MwoI	GCNNNNNNNGC	1 cut(s)	47
NdeI	CATATG	1 cut(s)	733
NdeII	GATC	4 cut(s)	136, 202, 325, 760
NlaIII	CATG	4 cut(s)	46, 178, 227, 553
NlaIV	GGNNCC	1 cut(s)	672
NmuCI	GTSAC	2 cut(s)	458, 565
NsiI	ATGCAT	1 cut(s)	235
NspI	RCATGY	1 cut(s)	178
OliI	CACNNNNGTG	1 cut(s)	307
PciI	ACATGT	1 cut(s)	174
PctI	GAATGC	1 cut(s)	84
PkrI	GCNGC	1 cut(s)	127
PleI	GAGTC	2 cut(s)	321, 547
PpsI	GAGTC	2 cut(s)	321, 547
PscI	ACATGT	1 cut(s)	174
PspFI	CCCAGC	1 cut(s)	625
PspN4I	GGNNCC	1 cut(s)	672
PsuI	RGATCY	1 cut(s)	136
PvuII	CAGCTG	2 cut(s)	95, 629
RsaI	GTAC	1 cut(s)	417
RsaNI	GTAC	1 cut(s)	416
RseI	CAYNNNNRTG	2 cut(s)	228, 307
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	4 cut(s)	136, 202, 325, 760
ScaI	AGTACT	1 cut(s)	417
SchI	GAGTC	2 cut(s)	322, 547
SduI	GDGCHC	1 cut(s)	444
SfaNI	GCATC	4 cut(s)	28, 112, 157, 242
SmiMI	CAYNNNNRTG	2 cut(s)	228, 307
SmlI	CTYRAG	1 cut(s)	466
SmoI	CTYRAG	1 cut(s)	466
Sse9I	AATT	6 cut(s)	16, 267, 435, 514, 581, 649
SsiI	CCGC	1 cut(s)	371
SspMI	CTAG	1 cut(s)	305
StyI	CCWWGG	1 cut(s)	695
TaaI	ACNGT	2 cut(s)	391, 748
TaqI	TCGA	1 cut(s)	753
TasI	AATT	6 cut(s)	16, 267, 435, 514, 581, 649
TatI	WGTACW	1 cut(s)	415
TscAI	CASTG	2 cut(s)	394, 481
TseFI	GTSAC	2 cut(s)	458, 565
TseI	GCWGC	1 cut(s)	125
Tsp45I	GTSAC	2 cut(s)	458, 565
TspDTI	ATGAA	5 cut(s)	206, 240, 508, 646, 750
TspGWI	ACGGA	4 cut(s)	50, 147, 345, 498
TspRI	CASTG	2 cut(s)	394, 481
XagI	CCTNNNNNAGG	1 cut(s)	405
XapI	RAATTY	2 cut(s)	267, 514
XceI	RCATGY	1 cut(s)	178
XmiI	GTMKAC	2 cut(s)	360, 702
XspI	CTAG	1 cut(s)	305
ZrmI	AGTACT	1 cut(s)	417
Zsp2I	ATGCAT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.