Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003361

Physical Location & Seq

Genomic Coordinates Reverse (-)

33394176 .. 33395597

Gene Structure 1422 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018659

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGAGGATTTGAGGAATTACAAAGTGAATGTTACGGATGCCATGACTGCAAATGTGTTGGGATATACTATATCAGGAATGCCACCTCCTTCAGCTGGAACTTTGGGGCTTTCTATGATTCTGAACATCTTCAACAGCTATGGAAATTCAGATGCAGCAAACGGAGATCTTGGTCTGCATCGTCTGATTGAAGCATTGAACACATGTTTGCAATCCAAACGAACTTGGGTGATCCTGCTTTTGTGGAGTCAGCTCAGAGATCACGAAACAAGTCATTTCTGCATAGTAGATGCAGACAGAAATGCGGTATCAATGACAACCACTGTAAACTATCCTTTTGGAGGTGGAGTACTCTCTCCTTCTACTGGAATTGTGCTCAACAATGAGATGGGTGACTTCTCAATTCCCACTAACATATCGCCAGACCATCTCCCTCCTGCTCCGTCAAATTTCATTGAACCAATCAAAAGACCTTTATCTTCCATGACTCCTATTATAGATAATCAATTGGTTGGTGTGCTTGGAGGTAGTGGTGGTTTGAACATTATCCCAGCTGTAACTCGGGTGTTTATCAATTATTTCATATTGGGGATGGAACCTTTAGCCGTAGTTCAAAGTCTAAGGGTCTACCACAGGATGGGCAGGAAATGTGGTAGAAGTTCAAATGAAAACGTTTTCCATGGTATACTCACTGCTGTAAGTGACCCTAGAAAAGATGGAAGGCCTGCAGCTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002237 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005887 GO:0006082 GO:0006508 GO:0006518 GO:0006520 GO:0006536 GO:0006575 GO:0006749 GO:0006751 GO:0006790 GO:0006805 GO:0006807 GO:0006950 GO:0006979 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008242 GO:0009056 GO:0009064 GO:0009410 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009987 GO:0010033 GO:0010467 GO:0014070 GO:0016020 GO:0016021 GO:0016485 GO:0016740 GO:0016746 GO:0016755 GO:0016756 GO:0016787 GO:0019538 GO:0019752 GO:0031179 GO:0031224 GO:0031226 GO:0031638 GO:0032355 GO:0032496 GO:0032502 GO:0033554 GO:0033993 GO:0034097 GO:0034599 GO:0034612 GO:0034641 GO:0036374 GO:0042219 GO:0042221 GO:0043170 GO:0043171 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043648 GO:0044237 GO:0044238 GO:0044248 GO:0044273 GO:0044281 GO:0044421 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051604 GO:0051704 GO:0051707 GO:0051716 GO:0070011 GO:0070887 GO:0071466 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00430 ko00460 ko00480 ko00590 ko01100 map00430 map00460 map00480 map00590 map01100

Pfam Domains

Protein Families

G_glu_transpept

Protein Analysis

246

Amino Acids

26.49

Weight (kDa)

6.58

Isoelectric Point (pI)

48.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G_glu_transpept	PF01019	2 - 73	1.4e-09	Gamma-glutamyltranspeptidase
G_glu_transpept	PF01019	84 - 213	2.4e-42	Gamma-glutamyltranspeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29210 AT4G29210 AT4G39650
fragaria_vesca	FvH4_1g06610 FvH4_1g06610
malus_domestica	MD02G1069100.v1.1 MD15G1200700.v1.1
prunus_persica	Prupe.7G216500_v2.0.a1
pyrus_communis	pycom02g05470 pycom15g17820
rosa_chinensis	RchiOBHm_Chr1g0323641 RchiOBHm_Chr2g0092341 RchiOBHm_Chr2g0139001 RchiOBHm_Chr5g0064951
rosa_laevigata	RLG00000015286 RLG00000016301 RLG00000018659
rosa_multiflora	Rmu_sc0000461.1_g000012 Rmu_sc0000461.1_g000013 Rmu_sc0003289.1_g000009 Rmu_sc0006014.1_g000003 Rmu_sc0006014.1_g000004 Rmu_sc0010108.1_g000002
rosa_roxburghii	Rroxscaffold_3G00249440
rosa_rugosa	Rorug02G0025000 Rorug02G0025100
rosa_samantha	Rh1CG057300 Rh1DG061100 Rh2AG071000 Rh2BG070600 Rh2BG414200 Rh2CG072000 Rh2DG069500
rosa_wichuraiana	Rw0G021800 Rw2G006130 Rw2G032860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	637
AccI	GTMKAC	2 cut(s)	627, 685
AciI	CCGC	1 cut(s)	305
AclI	AACGTT	1 cut(s)	672
AclWI	GGATC	1 cut(s)	226
AcsI	RAATTY	2 cut(s)	145, 448
AcuI	CTGAAG	1 cut(s)	75
AfaI	GTAC	1 cut(s)	351
AfiI	CCNNNNNNNGG	4 cut(s)	95, 341, 365, 637
AflIII	ACRYGT	1 cut(s)	203
AgsI	TTSAA	7 cut(s)	133, 191, 199, 458, 541, 614, 663
AluBI	AGCT	5 cut(s)	95, 138, 253, 554, 731
AluI	AGCT	5 cut(s)	95, 138, 253, 554, 731
Alw21I	GWGCWC	1 cut(s)	378
AlwI	GGATC	1 cut(s)	226
Ama87I	CYCGRG	1 cut(s)	561
AoxI	GGCC	1 cut(s)	722
ApeKI	GCWGC	2 cut(s)	155, 728
ApoI	RAATTY	2 cut(s)	145, 448
Asp700I	GAANNNNTTC	1 cut(s)	128
AsuHPI	GGTGA	2 cut(s)	241, 404
AvaI	CYCGRG	1 cut(s)	561
Bbv12I	GWGCWC	1 cut(s)	378
BbvI	GCAGC	1 cut(s)	167
BccI	CCATC	5 cut(s)	382, 435, 586, 631, 710
BceAI	ACGGC	1 cut(s)	590
BfaI	CTAG	1 cut(s)	708
BfmI	CTRYAG	1 cut(s)	726
BglII	AGATCT	1 cut(s)	166
BisI	GCNGC	2 cut(s)	156, 729
BlsI	GCNGC	2 cut(s)	157, 730
BmcAI	AGTACT	1 cut(s)	351
BmeT110I	CYCGRG	1 cut(s)	561
BmiI	GGNNCC	1 cut(s)	597
BmsI	GCATC	4 cut(s)	28, 142, 187, 280
BsaJI	CCNNGG	1 cut(s)	679
BsaXI	ACNNNNNCTCC	2 cut(s)	333, 363
Bsc4I	CCNNNNNNNGG	4 cut(s)	95, 341, 365, 637
Bse1I	ACTGG	1 cut(s)	370
BseDI	CCNNGG	1 cut(s)	679
BseGI	GGATG	3 cut(s)	43, 597, 642
BseLI	CCNNNNNNNGG	4 cut(s)	95, 341, 365, 637
BseMII	CTCAG	1 cut(s)	268
BseNI	ACTGG	1 cut(s)	370
BseXI	GCAGC	1 cut(s)	167
BseYI	CCCAGC	1 cut(s)	550
BshFI	GGCC	1 cut(s)	724
BsiHKAI	GWGCWC	1 cut(s)	378
BsiHKCI	CYCGRG	1 cut(s)	561
BslI	CCNNNNNNNGG	4 cut(s)	95, 341, 365, 637
BsmI	GAATGC	1 cut(s)	84
BsnI	GGCC	1 cut(s)	724
BsoBI	CYCGRG	1 cut(s)	561
Bsp1286I	GDGCHC	1 cut(s)	378
Bsp143I	GATC	3 cut(s)	166, 231, 259
Bsp19I	CCATGG	1 cut(s)	679
BspACI	CCGC	1 cut(s)	305
BspANI	GGCC	1 cut(s)	724
BspCNI	CTCAG	1 cut(s)	267
BspLI	GGNNCC	1 cut(s)	597
BspMAI	CTGCAG	1 cut(s)	730
BspPI	GGATC	1 cut(s)	226
BsrI	ACTGG	1 cut(s)	370
BssECI	CCNNGG	1 cut(s)	679
BssMI	GATC	3 cut(s)	166, 231, 259
BssNAI	GTATAC	1 cut(s)	686
BssT1I	CCWWGG	1 cut(s)	679
Bst1107I	GTATAC	1 cut(s)	686
Bst4CI	ACNGT	1 cut(s)	325
BstC8I	GCNNGC	1 cut(s)	726
BstDEI	CTNAG	2 cut(s)	254, 620
BstDSI	CCRYGG	1 cut(s)	679
BstENI	CCTNNNNNAGG	1 cut(s)	339
BstF5I	GGATG	3 cut(s)	43, 597, 642
BstKTI	GATC	3 cut(s)	169, 234, 262
BstMBI	GATC	3 cut(s)	166, 231, 259
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstNSI	RCATGY	1 cut(s)	207
BstSFI	CTRYAG	1 cut(s)	726
BstV1I	GCAGC	1 cut(s)	167
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
BstZ17I	GTATAC	1 cut(s)	686
BsuRI	GGCC	1 cut(s)	724
BtgI	CCRYGG	1 cut(s)	679
BtsCI	GGATG	3 cut(s)	43, 597, 642
BtsI	GCAGTG	1 cut(s)	690
BtsIMutI	CAGTG	2 cut(s)	321, 690
Cac8I	GCNNGC	1 cut(s)	726
Csp6I	GTAC	1 cut(s)	350
CviAII	CATG	4 cut(s)	43, 204, 484, 680
CviJI	RGCY	8 cut(s)	95, 109, 138, 253, 554, 605, 724, 731
CviKI_1	RGCY	8 cut(s)	95, 109, 138, 253, 554, 605, 724, 731
CviQI	GTAC	1 cut(s)	350
DdeI	CTNAG	2 cut(s)	254, 620
DpnI	GATC	3 cut(s)	168, 233, 261
DpnII	GATC	3 cut(s)	166, 231, 259
Eco130I	CCWWGG	1 cut(s)	679
Eco147I	AGGCCT	1 cut(s)	724
Eco57I	CTGAAG	1 cut(s)	75
Eco88I	CYCGRG	1 cut(s)	561
EcoNI	CCTNNNNNAGG	1 cut(s)	339
EcoT14I	CCWWGG	1 cut(s)	679
ErhI	CCWWGG	1 cut(s)	679
FaeI	CATG	4 cut(s)	46, 207, 487, 683
FatI	CATG	4 cut(s)	42, 203, 483, 679
FblI	GTMKAC	2 cut(s)	627, 685
Fnu4HI	GCNGC	2 cut(s)	156, 729
FokI	GGATG	3 cut(s)	50, 604, 649
Fsp4HI	GCNGC	2 cut(s)	156, 729
FspBI	CTAG	1 cut(s)	708
GluI	GCNGC	2 cut(s)	156, 729
GsaI	CCCAGC	1 cut(s)	554
HaeIII	GGCC	1 cut(s)	724
Hin1II	CATG	4 cut(s)	46, 207, 487, 683
HinfI	GANTC	3 cut(s)	118, 247, 487
HphI	GGTGA	2 cut(s)	241, 404
Hpy166II	GTNNAC	3 cut(s)	328, 628, 686
Hpy188I	TCNGA	4 cut(s)	123, 151, 186, 257
Hpy188III	TCNNGA	2 cut(s)	75, 263
Hpy8I	GTNNAC	3 cut(s)	328, 628, 686
HpyAV	CCTTC	3 cut(s)	99, 369, 714
HpyCH4III	ACNGT	1 cut(s)	325
HpyCH4IV	ACGT	1 cut(s)	672
HpyCH4V	TGCA	7 cut(s)	50, 155, 178, 211, 282, 293, 728
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpyF3I	CTNAG	2 cut(s)	254, 620
HpySE526I	ACGT	1 cut(s)	672
Hsp92II	CATG	4 cut(s)	46, 207, 487, 683
Kzo9I	GATC	3 cut(s)	166, 231, 259
LmnI	GCTCC	1 cut(s)	445
LpnPI	CCDG	9 cut(s)	60, 81, 248, 351, 435, 450, 564, 619, 628
Lsp1109I	GCAGC	1 cut(s)	167
LweI	GCATC	4 cut(s)	28, 142, 187, 280
MaeI	CTAG	1 cut(s)	708
MaeII	ACGT	1 cut(s)	672
MaeIII	GTNAC	4 cut(s)	31, 392, 556, 701
MalI	GATC	3 cut(s)	168, 233, 261
MboI	GATC	3 cut(s)	166, 231, 259
MboII	GAAGA	2 cut(s)	121, 471
MfeI	CAATTG	1 cut(s)	506
MflI	RGATCY	1 cut(s)	166
MhlI	GDGCHC	1 cut(s)	378
MluCI	AATT	7 cut(s)	16, 145, 369, 402, 448, 506, 574
MlyI	GAGTC	2 cut(s)	256, 481
MnlI	CCTC	5 cut(s)	6, 96, 335, 444, 518
MroXI	GAANNNNTTC	1 cut(s)	128
MspA1I	CMGCKG	3 cut(s)	95, 554, 731
MunI	CAATTG	1 cut(s)	506
Mva1269I	GAATGC	1 cut(s)	84
MwoI	GCNNNNNNNGC	1 cut(s)	47
NcoI	CCATGG	1 cut(s)	679
NdeII	GATC	3 cut(s)	166, 231, 259
NlaIII	CATG	4 cut(s)	46, 207, 487, 683
NlaIV	GGNNCC	1 cut(s)	597
NmuCI	GTSAC	2 cut(s)	392, 701
NspI	RCATGY	1 cut(s)	207
PceI	AGGCCT	1 cut(s)	724
PciI	ACATGT	1 cut(s)	203
PctI	GAATGC	1 cut(s)	84
PdmI	GAANNNNTTC	1 cut(s)	128
PfeI	GAWTC	1 cut(s)	118
PflMI	CCANNNNNTGG	1 cut(s)	637
PkrI	GCNGC	2 cut(s)	157, 730
PleI	GAGTC	2 cut(s)	255, 481
PpsI	GAGTC	2 cut(s)	255, 481
PscI	ACATGT	1 cut(s)	203
Psp1406I	AACGTT	1 cut(s)	672
PspFI	CCCAGC	1 cut(s)	550
PspN4I	GGNNCC	1 cut(s)	597
PstI	CTGCAG	1 cut(s)	730
PsuI	RGATCY	1 cut(s)	166
PvuII	CAGCTG	3 cut(s)	95, 554, 731
RsaI	GTAC	1 cut(s)	351
RsaNI	GTAC	1 cut(s)	350
SatI	GCNGC	2 cut(s)	156, 729
Sau3AI	GATC	3 cut(s)	166, 231, 259
ScaI	AGTACT	1 cut(s)	351
SchI	GAGTC	2 cut(s)	256, 481
SduI	GDGCHC	1 cut(s)	378
SfaNI	GCATC	4 cut(s)	28, 142, 187, 280
SfcI	CTRYAG	1 cut(s)	726
Sse9I	AATT	7 cut(s)	16, 145, 369, 402, 448, 506, 574
SseBI	AGGCCT	1 cut(s)	724
SsiI	CCGC	1 cut(s)	305
SspMI	CTAG	1 cut(s)	708
StuI	AGGCCT	1 cut(s)	724
StyI	CCWWGG	1 cut(s)	679
TaaI	ACNGT	1 cut(s)	325
TaiI	ACGT	1 cut(s)	675
TasI	AATT	7 cut(s)	16, 145, 369, 402, 448, 506, 574
TatI	WGTACW	1 cut(s)	349
TfiI	GAWTC	1 cut(s)	118
TscAI	CASTG	2 cut(s)	328, 697
TseFI	GTSAC	2 cut(s)	392, 701
TseI	GCWGC	2 cut(s)	155, 728
Tsp45I	GTSAC	2 cut(s)	392, 701
TspDTI	ATGAA	3 cut(s)	442, 571, 681
TspGWI	ACGGA	3 cut(s)	50, 177, 432
TspRI	CASTG	2 cut(s)	328, 697
Van91I	CCANNNNNTGG	1 cut(s)	637
XagI	CCTNNNNNAGG	1 cut(s)	339
XapI	RAATTY	2 cut(s)	145, 448
XceI	RCATGY	1 cut(s)	207
XmiI	GTMKAC	2 cut(s)	627, 685
XmnI	GAANNNNTTC	1 cut(s)	128
XspI	CTAG	1 cut(s)	708
ZrmI	AGTACT	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.