Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003361

Physical Location & Seq

Genomic Coordinates Forward (+)

64044423 .. 64045848

Gene Structure 1426 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015286

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGAGGATTTGAGGAATTACAAAGTGAATGTTACGGATGCCATGACTGCAAATGTGTTGGGATATGGTATATACTATATCAGGAATGCCACCTCCTTCAGTTGGAACTTTGGGGCTTTCTATGGTGGCTATGGAAATTCAAATGGAGCAAACGGAGATCTTGGTCTGCATCGTCTGATTGAAGCATTGAAACACATGTTTGCAATCCAAATGAACTTGGGTGATCCTGCTTTTGTAGATACCCATGAATATGCATCTGATATGCTTTCTCCATCCTTTGCTGAGGAAATTCAGCAGAAGATATTTGACAACACAACTTTCCCACCAGAATCACGGAACAAGTCATTTCTGCATAAAAGATGCAGACAAAATGCGGTATCAATGACAACCACTGTAAACTATCCTTTTGGAGGTGGAGTACTCTCTCCTTCTACTGGAATTGTGCTCAACAATGAGATGGGTGACTTCTCAATTCCCACTGACATATCGCCAGACCATCTCCCTCCTGCTCCGTCAAATTTCATTGAACCAATCAAAAGACCTTTATCTTCCATGACTCCTATTATAGTCACAAAGGATAATCAATTGGTTGGTGTGCTTGGAGGTAGTGGTGGTTTGAACATTATCCCAACTGTAACTCAGGTGTTTATCAATTATTTCATATTGGGGATGGAACCTTTAGCCGCAGTTCAGAGTCCAAGGGTCTACCACAGGCTAATACCAAACATAGTGTCCTATGAAAATTGGACTGTAATCGATGGAGATCATATCAAGCTTTCAGACGAAAGAAAGCTCTTCTTGCAGGAGCGGGGTCATGAATTGCAGGCTAAAGCCGGGGGAGCCATCACTCAGCTCATTGTTCAAAGACTTGGCCCTATTCAGATGGGCAGGAAATGTGGTAGAAGTTCAAATGAAAATGTTTTCCATGGTATACTCATTGCTGTAAGTGACCCTAGAAAAGATGGAAGGCCTGCAGCTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002237 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005887 GO:0006082 GO:0006508 GO:0006518 GO:0006520 GO:0006536 GO:0006575 GO:0006749 GO:0006751 GO:0006790 GO:0006805 GO:0006807 GO:0006950 GO:0006979 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008242 GO:0009056 GO:0009064 GO:0009410 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009987 GO:0010033 GO:0010467 GO:0014070 GO:0016020 GO:0016021 GO:0016485 GO:0016740 GO:0016746 GO:0016755 GO:0016756 GO:0016787 GO:0019538 GO:0019752 GO:0031179 GO:0031224 GO:0031226 GO:0031638 GO:0032355 GO:0032496 GO:0032502 GO:0033554 GO:0033993 GO:0034097 GO:0034599 GO:0034612 GO:0034641 GO:0036374 GO:0042219 GO:0042221 GO:0043170 GO:0043171 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043648 GO:0044237 GO:0044238 GO:0044248 GO:0044273 GO:0044281 GO:0044421 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051604 GO:0051704 GO:0051707 GO:0051716 GO:0070011 GO:0070887 GO:0071466 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00430 ko00460 ko00480 ko00590 ko01100 map00430 map00460 map00480 map00590 map01100

Pfam Domains

Protein Families

G_glu_transpept

Protein Analysis

328

Amino Acids

36.0

Weight (kDa)

6.5

Isoelectric Point (pI)

41.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G_glu_transpept	PF01019	2 - 322	8.6e-65	Gamma-glutamyltranspeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29210 AT4G29210 AT4G39650
fragaria_vesca	FvH4_1g06610 FvH4_1g06610
malus_domestica	MD02G1069100.v1.1 MD15G1200700.v1.1
prunus_persica	Prupe.7G216500_v2.0.a1
pyrus_communis	pycom02g05470 pycom15g17820
rosa_chinensis	RchiOBHm_Chr1g0323641 RchiOBHm_Chr2g0092341 RchiOBHm_Chr2g0139001 RchiOBHm_Chr5g0064951
rosa_laevigata	RLG00000015286 RLG00000016301 RLG00000018659
rosa_multiflora	Rmu_sc0000461.1_g000012 Rmu_sc0000461.1_g000013 Rmu_sc0003289.1_g000009 Rmu_sc0006014.1_g000003 Rmu_sc0006014.1_g000004 Rmu_sc0010108.1_g000002
rosa_roxburghii	Rroxscaffold_3G00249440
rosa_rugosa	Rorug02G0025000 Rorug02G0025100
rosa_samantha	Rh1CG057300 Rh1DG061100 Rh2AG071000 Rh2BG070600 Rh2BG414200 Rh2CG072000 Rh2DG069500
rosa_wichuraiana	Rw0G021800 Rw2G006130 Rw2G032860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	808
AccI	GTMKAC	2 cut(s)	705, 931
AciI	CCGC	3 cut(s)	374, 684, 808
AclWI	GGATC	1 cut(s)	218
AcsI	RAATTY	3 cut(s)	136, 288, 517
AcuI	CTGAAG	1 cut(s)	82
AfaI	GTAC	1 cut(s)	420
AfiI	CCNNNNNNNGG	3 cut(s)	102, 410, 434
AflIII	ACRYGT	1 cut(s)	195
AgsI	TTSAA	7 cut(s)	141, 182, 190, 527, 619, 863, 909
AluBI	AGCT	4 cut(s)	775, 793, 853, 977
AluI	AGCT	4 cut(s)	775, 793, 853, 977
Alw21I	GWGCWC	1 cut(s)	447
AlwI	GGATC	1 cut(s)	218
AoxI	GGCC	2 cut(s)	871, 968
ApeKI	GCWGC	1 cut(s)	974
ApoI	RAATTY	3 cut(s)	136, 288, 517
ArsI	GACNNNNNNTTYG	2 cut(s)	716, 748
AspS9I	GGNCC	1 cut(s)	872
AsuC2I	CCSGG	1 cut(s)	835
AsuHPI	GGTGA	2 cut(s)	233, 473
Bbv12I	GWGCWC	1 cut(s)	447
BbvCI	CCTCAGC	1 cut(s)	282
BccI	CCATC	8 cut(s)	280, 451, 504, 664, 752, 851, 877, 956
BcnI	CCSGG	1 cut(s)	835
BfaI	CTAG	1 cut(s)	954
BfmI	CTRYAG	1 cut(s)	972
BglII	AGATCT	1 cut(s)	157
BisI	GCNGC	2 cut(s)	684, 975
BlsI	GCNGC	2 cut(s)	685, 976
BmcAI	AGTACT	1 cut(s)	420
Bme1390I	CCNGG	1 cut(s)	835
BmgT120I	GGNCC	1 cut(s)	872
BmiI	GGNNCC	2 cut(s)	675, 841
BmrFI	CCNGG	1 cut(s)	835
BmsI	GCATC	4 cut(s)	28, 178, 263, 350
Bpu10I	CCTNAGC	1 cut(s)	282
BpuMI	CCSGG	1 cut(s)	835
Bsa29I	ATCGAT	1 cut(s)	756
BsaBI	GATNNNNATC	1 cut(s)	762
BsaJI	CCNNGG	3 cut(s)	698, 834, 925
BsaXI	ACNNNNNCTCC	2 cut(s)	402, 432
Bsc4I	CCNNNNNNNGG	3 cut(s)	102, 410, 434
Bse1I	ACTGG	1 cut(s)	439
Bse3DI	GCAATG	1 cut(s)	936
Bse8I	GATNNNNATC	1 cut(s)	762
BseCI	ATCGAT	1 cut(s)	756
BseDI	CCNNGG	3 cut(s)	698, 834, 925
BseGI	GGATG	3 cut(s)	43, 272, 675
BseJI	GATNNNNATC	1 cut(s)	762
BseLI	CCNNNNNNNGG	3 cut(s)	102, 410, 434
BseMI	GCAATG	1 cut(s)	936
BseMII	CTCAG	3 cut(s)	273, 653, 863
BseNI	ACTGG	1 cut(s)	439
BshFI	GGCC	2 cut(s)	873, 970
BshVI	ATCGAT	1 cut(s)	756
BsiHKAI	GWGCWC	1 cut(s)	447
BsiSI	CCGG	1 cut(s)	834
BslI	CCNNNNNNNGG	3 cut(s)	102, 410, 434
BsmI	GAATGC	1 cut(s)	91
BsnI	GGCC	2 cut(s)	873, 970
Bsp1286I	GDGCHC	1 cut(s)	447
Bsp143I	GATC	3 cut(s)	157, 223, 763
Bsp19I	CCATGG	1 cut(s)	925
BspACI	CCGC	3 cut(s)	374, 684, 808
BspANI	GGCC	2 cut(s)	873, 970
BspCNI	CTCAG	3 cut(s)	274, 652, 862
BspDI	ATCGAT	1 cut(s)	756
BspHI	TCATGA	1 cut(s)	814
BspLI	GGNNCC	2 cut(s)	675, 841
BspMAI	CTGCAG	1 cut(s)	976
BspPI	GGATC	1 cut(s)	218
BspQI	GCTCTTC	1 cut(s)	800
BsrBI	CCGCTC	1 cut(s)	808
BsrDI	GCAATG	1 cut(s)	936
BsrI	ACTGG	1 cut(s)	439
BssECI	CCNNGG	3 cut(s)	698, 834, 925
BssMI	GATC	3 cut(s)	157, 223, 763
BssNAI	GTATAC	1 cut(s)	932
BssT1I	CCWWGG	2 cut(s)	698, 925
Bst1107I	GTATAC	1 cut(s)	932
Bst4CI	ACNGT	3 cut(s)	394, 634, 751
Bst6I	CTCTTC	1 cut(s)	800
BstC8I	GCNNGC	2 cut(s)	825, 972
BstDEI	CTNAG	3 cut(s)	282, 639, 849
BstDSI	CCRYGG	1 cut(s)	925
BstENI	CCTNNNNNAGG	1 cut(s)	408
BstF5I	GGATG	3 cut(s)	43, 272, 675
BstKTI	GATC	3 cut(s)	160, 226, 766
BstMBI	GATC	3 cut(s)	157, 223, 763
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 799, 839
BstNSI	RCATGY	1 cut(s)	199
BstSCI	CCNGG	1 cut(s)	833
BstSFI	CTRYAG	1 cut(s)	972
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BstZ17I	GTATAC	1 cut(s)	932
Bsu15I	ATCGAT	1 cut(s)	756
BsuRI	GGCC	2 cut(s)	873, 970
BsuTUI	ATCGAT	1 cut(s)	756
BtgI	CCRYGG	1 cut(s)	925
BtsCI	GGATG	3 cut(s)	43, 272, 675
BtsIMutI	CAGTG	2 cut(s)	390, 477
Cac8I	GCNNGC	2 cut(s)	825, 972
CciI	TCATGA	1 cut(s)	814
Cfr13I	GGNCC	1 cut(s)	872
ClaI	ATCGAT	1 cut(s)	756
Csp6I	GTAC	1 cut(s)	419
CviAII	CATG	6 cut(s)	43, 196, 245, 553, 815, 926
CviQI	GTAC	1 cut(s)	419
DdeI	CTNAG	3 cut(s)	282, 639, 849
DpnI	GATC	3 cut(s)	159, 225, 765
DpnII	GATC	3 cut(s)	157, 223, 763
Eam1104I	CTCTTC	1 cut(s)	800
EarI	CTCTTC	1 cut(s)	800
Eco130I	CCWWGG	2 cut(s)	698, 925
Eco147I	AGGCCT	1 cut(s)	970
Eco57I	CTGAAG	1 cut(s)	82
EcoNI	CCTNNNNNAGG	1 cut(s)	408
EcoT14I	CCWWGG	2 cut(s)	698, 925
EcoT22I	ATGCAT	1 cut(s)	256
ErhI	CCWWGG	2 cut(s)	698, 925
FaeI	CATG	6 cut(s)	46, 199, 248, 556, 818, 929
FalI	AAGNNNNNCTT	2 cut(s)	782, 814
FatI	CATG	6 cut(s)	42, 195, 244, 552, 814, 925
FauI	CCCGC	1 cut(s)	801
FblI	GTMKAC	2 cut(s)	705, 931
Fnu4HI	GCNGC	2 cut(s)	684, 975
FokI	GGATG	3 cut(s)	50, 259, 682
Fsp4HI	GCNGC	2 cut(s)	684, 975
FspBI	CTAG	1 cut(s)	954
GluI	GCNGC	2 cut(s)	684, 975
HaeIII	GGCC	2 cut(s)	873, 970
HapII	CCGG	1 cut(s)	834
Hin1II	CATG	6 cut(s)	46, 199, 248, 556, 818, 929
HindIII	AAGCTT	1 cut(s)	773
HinfI	GANTC	3 cut(s)	329, 556, 694
HpaII	CCGG	1 cut(s)	834
HphI	GGTGA	2 cut(s)	233, 473
Hpy166II	GTNNAC	3 cut(s)	397, 706, 932
Hpy188I	TCNGA	5 cut(s)	177, 259, 693, 781, 882
Hpy188III	TCNNGA	2 cut(s)	82, 815
Hpy8I	GTNNAC	3 cut(s)	397, 706, 932
HpyAV	CCTTC	3 cut(s)	106, 438, 960
HpyCH4III	ACNGT	3 cut(s)	394, 634, 751
HpyCH4V	TGCA	9 cut(s)	50, 169, 203, 254, 352, 363, 802, 823, 974
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 799, 839
HpyF3I	CTNAG	3 cut(s)	282, 639, 849
Hsp92II	CATG	6 cut(s)	46, 199, 248, 556, 818, 929
Kzo9I	GATC	3 cut(s)	157, 223, 763
LguI	GCTCTTC	1 cut(s)	800
LmnI	GCTCC	4 cut(s)	146, 514, 805, 839
LweI	GCATC	4 cut(s)	28, 178, 263, 350
MaeI	CTAG	1 cut(s)	954
MaeIII	GTNAC	5 cut(s)	31, 461, 568, 634, 947
MalI	GATC	3 cut(s)	159, 225, 765
MbiI	CCGCTC	1 cut(s)	808
MboI	GATC	3 cut(s)	157, 223, 763
MboII	GAAGA	3 cut(s)	310, 540, 787
MfeI	CAATTG	1 cut(s)	584
MflI	RGATCY	1 cut(s)	157
MhlI	GDGCHC	1 cut(s)	447
MlyI	GAGTC	2 cut(s)	550, 703
MmeI	TCCRAC	1 cut(s)	83
MnlI	CCTC	6 cut(s)	6, 103, 277, 404, 513, 596
Mph1103I	ATGCAT	1 cut(s)	256
MslI	CAYNNNNRTG	1 cut(s)	249
MspA1I	CMGCKG	1 cut(s)	977
MspI	CCGG	1 cut(s)	834
MspR9I	CCNGG	1 cut(s)	835
MunI	CAATTG	1 cut(s)	584
Mva1269I	GAATGC	1 cut(s)	91
MwoI	GCNNNNNNNGC	3 cut(s)	47, 799, 839
NciI	CCSGG	1 cut(s)	835
NcoI	CCATGG	1 cut(s)	925
NdeII	GATC	3 cut(s)	157, 223, 763
NlaIII	CATG	6 cut(s)	46, 199, 248, 556, 818, 929
NlaIV	GGNNCC	2 cut(s)	675, 841
NmuCI	GTSAC	3 cut(s)	461, 568, 947
NsiI	ATGCAT	1 cut(s)	256
NspI	RCATGY	1 cut(s)	199
PagI	TCATGA	1 cut(s)	814
PceI	AGGCCT	1 cut(s)	970
PciI	ACATGT	1 cut(s)	195
PciSI	GCTCTTC	1 cut(s)	800
PctI	GAATGC	1 cut(s)	91
PfeI	GAWTC	1 cut(s)	329
PkrI	GCNGC	2 cut(s)	685, 976
PleI	GAGTC	2 cut(s)	550, 702
PpsI	GAGTC	2 cut(s)	550, 702
PscI	ACATGT	1 cut(s)	195
PspN4I	GGNNCC	2 cut(s)	675, 841
PspPI	GGNCC	1 cut(s)	872
PstI	CTGCAG	1 cut(s)	976
PsuI	RGATCY	1 cut(s)	157
PvuII	CAGCTG	1 cut(s)	977
RsaI	GTAC	1 cut(s)	420
RsaNI	GTAC	1 cut(s)	419
RseI	CAYNNNNRTG	1 cut(s)	249
SapI	GCTCTTC	1 cut(s)	800
SatI	GCNGC	2 cut(s)	684, 975
Sau3AI	GATC	3 cut(s)	157, 223, 763
Sau96I	GGNCC	1 cut(s)	872
ScaI	AGTACT	1 cut(s)	420
SchI	GAGTC	2 cut(s)	550, 703
ScrFI	CCNGG	1 cut(s)	835
SduI	GDGCHC	1 cut(s)	447
SfaNI	GCATC	4 cut(s)	28, 178, 263, 350
SfcI	CTRYAG	1 cut(s)	972
SmiMI	CAYNNNNRTG	1 cut(s)	249
SseBI	AGGCCT	1 cut(s)	970
SsiI	CCGC	3 cut(s)	374, 684, 808
SspMI	CTAG	1 cut(s)	954
StuI	AGGCCT	1 cut(s)	970
StyD4I	CCNGG	1 cut(s)	833
StyI	CCWWGG	2 cut(s)	698, 925
TaaI	ACNGT	3 cut(s)	394, 634, 751
TaqI	TCGA	1 cut(s)	756
TatI	WGTACW	1 cut(s)	418
TauI	GCSGC	1 cut(s)	686
TfiI	GAWTC	1 cut(s)	329
TscAI	CASTG	2 cut(s)	397, 484
TseFI	GTSAC	3 cut(s)	461, 568, 947
TseI	GCWGC	1 cut(s)	974
Tsp45I	GTSAC	3 cut(s)	461, 568, 947
TspDTI	ATGAA	7 cut(s)	227, 261, 511, 649, 753, 831, 927
TspGWI	ACGGA	4 cut(s)	50, 168, 349, 501
TspRI	CASTG	2 cut(s)	397, 484
XagI	CCTNNNNNAGG	1 cut(s)	408
XapI	RAATTY	3 cut(s)	136, 288, 517
XceI	RCATGY	1 cut(s)	199
XmiI	GTMKAC	2 cut(s)	705, 931
XspI	CTAG	1 cut(s)	954
ZrmI	AGTACT	1 cut(s)	420
Zsp2I	ATGCAT	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.