Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003361

Physical Location & Seq

Genomic Coordinates Reverse (-)

5852777 .. 5855929

Gene Structure 3153 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG071000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

ATGTATGAAAGCAATCCTGAAGCCAAGTTATATGGTGCATTGTCGATGGGGGTTCCTGGTGAGATTGCTGGTCTACATGAAGCATGGTTACAACATGGGCGAATGGCGTGGAGGACTTTATTTCAGCCTGCAATAAAGCTCGCTAAAGAGGGATTTGAAGTTGCTCCTTATCTTGGAGGACATATACGTTCATGTGAAGAAATGATTATAAAAGACCCTGGCTTAAGGCAAGTGTTTGCCCCAAACGGGAAGCTGTTAAAAGCAGGTGATAAGTGTTATAATGTGGAACTTGGCAATAGCTTAGAGGCAATTGCAGAACTGGGGCCACAAGCCTTCTACAACGGTAGTCTTGGTGAAAAAATTGTAAAAGATGTGAGAGAGGCTGGTGGGATTTTGACAATGGAGGATTTGAGGAATTACAAAGTGAATGTTACGGATGCCATGACTGCAAATGTGTTGGGATATACTATATCAGGAATGCCACCTCCTTCAGCTGGAACTTTGGGGCTTTCTATGATTCTGAACATCTTCAACAGCTACGGAAATTCAGATGCAGCAAACGGAGATCTTGGTCTGCATCGTCTGGTTGAAGCATTGAAACACATGTTTGCAATCCGAATGAACTTGGGTGATCCTGCTTTTGTAGATACCCATGAATATGCATCTGACATGCTTTCTCCATCCTTTGCTAAGGAAATTCAGCAGAAGATATTTGACAACACAACTTTCCCACCAGAGTACTATTCATACAGGTGGAGTCAGCTCAGAGATCACGGAACAAGTCATTTCTGCATAGTAGATGCAGACAGAAATGCGGTATCAATGACAACCACTGTAAACTATCCTTTTGGAGGTGGAGTACTCTCTCCTTCTACTGGAATTGTGCTCAACAATGAGATGGGTGACTTCTCAATTCCCACTGACATATCGCCAGACCATCTCCCTCCTGCTCCGTCAAATTTCATTGAACCAATCAAAAGACCTTTATCTTCCATGACTCCTATAATAGTCACAAAGGATAATCAATTGGTTGGTGTGCTTGGAGGTAGTGGTGGTTTGAACATTATCCCAGCTGTAACTCAGGTGTTTATCAATTATTTCATATTGGGGATGGAACCTTTAGCCGCAGTTCAAAGTCCAAGGGTCTACCACAGGCTAATACCAAACATAGTGTCCTATGAAAACTGGACTGTAATTGATGGAGATCATATCGAGCTTTCAGACGAAAGAAAGCTCTTCTTGCAGGAGCGGGGTCATGAATTGCAGGCTAAAGCCGGGGGAGCCATCACTCAGCTCATTGTTCAAAGACTTGGAAACCCTATTCATATGGGCAGGAAATGTGGTAGAAGTTCAAATGAAAACGTTTTCCATGGTATACTCACTGCTGTAAGTGACCCCAGAAAAGATGGAAGGCCTGCAGCTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002237 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005887 GO:0006082 GO:0006508 GO:0006518 GO:0006520 GO:0006536 GO:0006575 GO:0006749 GO:0006751 GO:0006790 GO:0006805 GO:0006807 GO:0006950 GO:0006979 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008242 GO:0009056 GO:0009064 GO:0009410 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009987 GO:0010033 GO:0010467 GO:0014070 GO:0016020 GO:0016021 GO:0016485 GO:0016740 GO:0016746 GO:0016755 GO:0016756 GO:0016787 GO:0019538 GO:0019752 GO:0031179 GO:0031224 GO:0031226 GO:0031638 GO:0032355 GO:0032496 GO:0032502 GO:0033554 GO:0033993 GO:0034097 GO:0034599 GO:0034612 GO:0034641 GO:0036374 GO:0042219 GO:0042221 GO:0043170 GO:0043171 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043648 GO:0044237 GO:0044238 GO:0044248 GO:0044273 GO:0044281 GO:0044421 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051604 GO:0051704 GO:0051707 GO:0051716 GO:0070011 GO:0070887 GO:0071466 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00430 ko00460 ko00480 ko00590 ko01100 map00430 map00460 map00480 map00590 map01100

Pfam Domains

Protein Families

G_glu_transpept

Protein Analysis

475

Amino Acids

51.89

Weight (kDa)

5.79

Isoelectric Point (pI)

39.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G_glu_transpept	PF01019	1 - 470	3.1e-140	Gamma-glutamyltranspeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29210 AT4G29210 AT4G39650
fragaria_vesca	FvH4_1g06610 FvH4_1g06610
malus_domestica	MD02G1069100.v1.1 MD15G1200700.v1.1
prunus_persica	Prupe.7G216500_v2.0.a1
pyrus_communis	pycom02g05470 pycom15g17820
rosa_chinensis	RchiOBHm_Chr1g0323641 RchiOBHm_Chr2g0092341 RchiOBHm_Chr2g0139001 RchiOBHm_Chr5g0064951
rosa_laevigata	RLG00000015286 RLG00000016301 RLG00000018659
rosa_multiflora	Rmu_sc0000461.1_g000012 Rmu_sc0000461.1_g000013 Rmu_sc0003289.1_g000009 Rmu_sc0006014.1_g000003 Rmu_sc0006014.1_g000004 Rmu_sc0010108.1_g000002
rosa_roxburghii	Rroxscaffold_3G00249440
rosa_rugosa	Rorug02G0025000 Rorug02G0025100
rosa_samantha	Rh1CG057300 Rh1DG061100 Rh2AG071000 Rh2BG070600 Rh2BG414200 Rh2CG072000 Rh2DG069500
rosa_wichuraiana	Rw0G021800 Rw2G006130 Rw2G032860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	209, 279
AarI	CACCTGC	1 cut(s)	254
Acc36I	ACCTGC	1 cut(s)	254
AccBSI	CCGCTC	1 cut(s)	1249
AccI	GTMKAC	3 cut(s)	73, 1146, 1375
AciI	CCGC	3 cut(s)	815, 1125, 1249
AclI	AACGTT	1 cut(s)	1362
AclWI	GGATC	1 cut(s)	626
AcsI	RAATTY	3 cut(s)	544, 696, 958
AcuI	CTGAAG	2 cut(s)	39, 474
AfaI	GTAC	2 cut(s)	740, 861
AfiI	CCNNNNNNNGG	5 cut(s)	173, 246, 494, 851, 875
AflII	CTTAAG	1 cut(s)	223
AflIII	ACRYGT	1 cut(s)	603
AgsI	TTSAA	9 cut(s)	158, 532, 590, 598, 968, 1060, 1133, 1304, 1353
AjnI	CCWGG	2 cut(s)	55, 217
Alw21I	GWGCWC	1 cut(s)	888
AlwI	GGATC	1 cut(s)	626
AoxI	GGCC	2 cut(s)	323, 1412
ApeKI	GCWGC	2 cut(s)	554, 1418
ApoI	RAATTY	3 cut(s)	544, 696, 958
ArsI	GACNNNNNNTTYG	2 cut(s)	1157, 1189
Asp700I	GAANNNNTTC	1 cut(s)	527
AspS9I	GGNCC	1 cut(s)	323
AsuC2I	CCSGG	1 cut(s)	1276
AsuHPI	GGTGA	5 cut(s)	71, 278, 365, 641, 914
BarI	GAAGNNNNNNTAC	2 cut(s)	72, 104
Bbv12I	GWGCWC	1 cut(s)	888
BbvI	GCAGC	1 cut(s)	566
BccI	CCATC	8 cut(s)	40, 688, 892, 945, 1105, 1193, 1292, 1400
BciT130I	CCWGG	2 cut(s)	57, 219
BcnI	CCSGG	1 cut(s)	1276
BfmI	CTRYAG	1 cut(s)	1416
BfrI	CTTAAG	1 cut(s)	223
BfuAI	ACCTGC	1 cut(s)	254
BglII	AGATCT	1 cut(s)	565
BisI	GCNGC	3 cut(s)	555, 1125, 1419
BlsI	GCNGC	3 cut(s)	556, 1126, 1420
BmcAI	AGTACT	2 cut(s)	740, 861
Bme1390I	CCNGG	3 cut(s)	57, 219, 1276
BmgT120I	GGNCC	1 cut(s)	323
BmiI	GGNNCC	4 cut(s)	54, 324, 1116, 1282
BmrFI	CCNGG	3 cut(s)	57, 219, 1276
BmrI	ACTGGG	1 cut(s)	329
BmsI	GCATC	5 cut(s)	427, 541, 586, 671, 790
BmuI	ACTGGG	1 cut(s)	329
Bpu10I	CCTNAGC	1 cut(s)	690
BpuMI	CCSGG	1 cut(s)	1276
BsaBI	GATNNNNATC	1 cut(s)	1203
BsaJI	CCNNGG	4 cut(s)	217, 1139, 1275, 1369
BsaXI	ACNNNNNCTCC	2 cut(s)	843, 873
Bsc4I	CCNNNNNNNGG	5 cut(s)	173, 246, 494, 851, 875
Bse1I	ACTGG	3 cut(s)	324, 880, 1190
Bse8I	GATNNNNATC	1 cut(s)	1203
BseBI	CCWGG	2 cut(s)	57, 219
BseDI	CCNNGG	4 cut(s)	217, 1139, 1275, 1369
BseGI	GGATG	3 cut(s)	442, 680, 1116
BseJI	GATNNNNATC	1 cut(s)	1203
BseLI	CCNNNNNNNGG	5 cut(s)	173, 246, 494, 851, 875
BseMII	CTCAG	3 cut(s)	778, 1094, 1304
BseNI	ACTGG	3 cut(s)	324, 880, 1190
BseXI	GCAGC	1 cut(s)	566
BseYI	CCCAGC	1 cut(s)	1069
BshFI	GGCC	2 cut(s)	325, 1414
BsiHKAI	GWGCWC	1 cut(s)	888
BsiSI	CCGG	1 cut(s)	1275
BslI	CCNNNNNNNGG	5 cut(s)	173, 246, 494, 851, 875
BsmI	GAATGC	1 cut(s)	483
BsnI	GGCC	2 cut(s)	325, 1414
Bsp1286I	GDGCHC	1 cut(s)	888
Bsp143I	GATC	4 cut(s)	565, 631, 769, 1204
Bsp19I	CCATGG	1 cut(s)	1369
BspACI	CCGC	3 cut(s)	815, 1125, 1249
BspANI	GGCC	2 cut(s)	325, 1414
BspCNI	CTCAG	3 cut(s)	777, 1093, 1303
BspHI	TCATGA	1 cut(s)	1255
BspLI	GGNNCC	4 cut(s)	54, 324, 1116, 1282
BspMAI	CTGCAG	1 cut(s)	1420
BspMI	ACCTGC	1 cut(s)	254
BspPI	GGATC	1 cut(s)	626
BspQI	GCTCTTC	1 cut(s)	1241
BspTI	CTTAAG	1 cut(s)	223
BsrBI	CCGCTC	1 cut(s)	1249
BsrI	ACTGG	3 cut(s)	324, 880, 1190
BssECI	CCNNGG	4 cut(s)	217, 1139, 1275, 1369
BssMI	GATC	4 cut(s)	565, 631, 769, 1204
BssNAI	GTATAC	1 cut(s)	1376
BssT1I	CCWWGG	2 cut(s)	1139, 1369
Bst1107I	GTATAC	1 cut(s)	1376
Bst2UI	CCWGG	2 cut(s)	57, 219
Bst4CI	ACNGT	3 cut(s)	344, 835, 1192
Bst6I	CTCTTC	1 cut(s)	1241
BstAFI	CTTAAG	1 cut(s)	223
BstC8I	GCNNGC	4 cut(s)	129, 141, 1266, 1416
BstDEI	CTNAG	5 cut(s)	301, 690, 764, 1080, 1290
BstDSI	CCRYGG	1 cut(s)	1369
BstENI	CCTNNNNNAGG	1 cut(s)	849
BstF5I	GGATG	3 cut(s)	442, 680, 1116
BstKTI	GATC	4 cut(s)	568, 634, 772, 1207
BstMBI	GATC	4 cut(s)	565, 631, 769, 1204
BstMWI	GCNNNNNNNGC	3 cut(s)	446, 1240, 1280
BstNI	CCWGG	2 cut(s)	57, 219
BstNSI	RCATGY	2 cut(s)	607, 673
BstSCI	CCNGG	3 cut(s)	55, 217, 1274
BstSFI	CTRYAG	1 cut(s)	1416
BstV1I	GCAGC	1 cut(s)	566
BstX2I	RGATCY	1 cut(s)	565
BstYI	RGATCY	1 cut(s)	565
BstZ17I	GTATAC	1 cut(s)	1376
BsuRI	GGCC	2 cut(s)	325, 1414
BtgI	CCRYGG	1 cut(s)	1369
BtsCI	GGATG	3 cut(s)	442, 680, 1116
BtsI	GCAGTG	1 cut(s)	1380
BtsIMutI	CAGTG	3 cut(s)	831, 918, 1380
BveI	ACCTGC	1 cut(s)	254
Cac8I	GCNNGC	4 cut(s)	129, 141, 1266, 1416
CciI	TCATGA	1 cut(s)	1255
Cfr13I	GGNCC	1 cut(s)	323
Csp6I	GTAC	2 cut(s)	739, 860
CviQI	GTAC	2 cut(s)	739, 860
DdeI	CTNAG	5 cut(s)	301, 690, 764, 1080, 1290
DpnI	GATC	4 cut(s)	567, 633, 771, 1206
DpnII	GATC	4 cut(s)	565, 631, 769, 1204
Eam1104I	CTCTTC	1 cut(s)	1241
EarI	CTCTTC	1 cut(s)	1241
Eco130I	CCWWGG	2 cut(s)	1139, 1369
Eco147I	AGGCCT	1 cut(s)	1414
Eco57I	CTGAAG	2 cut(s)	39, 474
EcoNI	CCTNNNNNAGG	1 cut(s)	849
EcoRII	CCWGG	2 cut(s)	55, 217
EcoT14I	CCWWGG	2 cut(s)	1139, 1369
EcoT22I	ATGCAT	1 cut(s)	664
ErhI	CCWWGG	2 cut(s)	1139, 1369
FalI	AAGNNNNNCTT	2 cut(s)	1223, 1255
FauI	CCCGC	1 cut(s)	1242
FauNDI	CATATG	1 cut(s)	1326
FblI	GTMKAC	3 cut(s)	73, 1146, 1375
Fnu4HI	GCNGC	3 cut(s)	555, 1125, 1419
FokI	GGATG	3 cut(s)	449, 667, 1123
Fsp4HI	GCNGC	3 cut(s)	555, 1125, 1419
GluI	GCNGC	3 cut(s)	555, 1125, 1419
GsaI	CCCAGC	1 cut(s)	1073
HaeIII	GGCC	2 cut(s)	325, 1414
HapII	CCGG	1 cut(s)	1275
HinfI	GANTC	3 cut(s)	517, 757, 997
HpaII	CCGG	1 cut(s)	1275
HphI	GGTGA	5 cut(s)	71, 278, 365, 641, 914
Hpy166II	GTNNAC	4 cut(s)	74, 838, 1147, 1376
Hpy188I	TCNGA	6 cut(s)	522, 550, 617, 667, 767, 1222
Hpy188III	TCNNGA	3 cut(s)	17, 474, 1256
Hpy8I	GTNNAC	4 cut(s)	74, 838, 1147, 1376
HpyAV	CCTTC	4 cut(s)	343, 498, 879, 1404
HpyCH4III	ACNGT	3 cut(s)	344, 835, 1192
HpyCH4IV	ACGT	2 cut(s)	187, 1362
HpyF10VI	GCNNNNNNNGC	3 cut(s)	446, 1240, 1280
HpyF3I	CTNAG	5 cut(s)	301, 690, 764, 1080, 1290
HpySE526I	ACGT	2 cut(s)	187, 1362
Kzo9I	GATC	4 cut(s)	565, 631, 769, 1204
LguI	GCTCTTC	1 cut(s)	1241
LmnI	GCTCC	4 cut(s)	169, 955, 1246, 1280
Lsp1109I	GCAGC	1 cut(s)	566
LweI	GCATC	5 cut(s)	427, 541, 586, 671, 790
MaeII	ACGT	2 cut(s)	187, 1362
MaeIII	GTNAC	6 cut(s)	87, 430, 902, 1009, 1075, 1391
MalI	GATC	4 cut(s)	567, 633, 771, 1206
MbiI	CCGCTC	1 cut(s)	1249
MboI	GATC	4 cut(s)	565, 631, 769, 1204
MboII	GAAGA	5 cut(s)	209, 520, 718, 981, 1228
MfeI	CAATTG	2 cut(s)	309, 1025
MflI	RGATCY	1 cut(s)	565
MhlI	GDGCHC	1 cut(s)	888
MlyI	GAGTC	2 cut(s)	766, 991
Mph1103I	ATGCAT	1 cut(s)	664
MroXI	GAANNNNTTC	1 cut(s)	527
MseI	TTAA	2 cut(s)	224, 257
MslI	CAYNNNNRTG	2 cut(s)	657, 751
MspA1I	CMGCKG	3 cut(s)	494, 1073, 1421
MspCI	CTTAAG	1 cut(s)	223
MspI	CCGG	1 cut(s)	1275
MspR9I	CCNGG	3 cut(s)	57, 219, 1276
MunI	CAATTG	2 cut(s)	309, 1025
Mva1269I	GAATGC	1 cut(s)	483
MvaI	CCWGG	2 cut(s)	57, 219
MwoI	GCNNNNNNNGC	3 cut(s)	446, 1240, 1280
NciI	CCSGG	1 cut(s)	1276
NcoI	CCATGG	1 cut(s)	1369
NdeI	CATATG	1 cut(s)	1326
NdeII	GATC	4 cut(s)	565, 631, 769, 1204
NlaIV	GGNNCC	4 cut(s)	54, 324, 1116, 1282
NmuCI	GTSAC	3 cut(s)	902, 1009, 1391
NsiI	ATGCAT	1 cut(s)	664
NspI	RCATGY	2 cut(s)	607, 673
PagI	TCATGA	1 cut(s)	1255
PaqCI	CACCTGC	1 cut(s)	254
PceI	AGGCCT	1 cut(s)	1414
PciI	ACATGT	1 cut(s)	603
PciSI	GCTCTTC	1 cut(s)	1241
PctI	GAATGC	1 cut(s)	483
PdmI	GAANNNNTTC	1 cut(s)	527
PfeI	GAWTC	1 cut(s)	517
PkrI	GCNGC	3 cut(s)	556, 1126, 1420
PleI	GAGTC	2 cut(s)	765, 991
PpsI	GAGTC	2 cut(s)	765, 991
PscI	ACATGT	1 cut(s)	603
PsiI	TTATAA	2 cut(s)	209, 279
Psp1406I	AACGTT	1 cut(s)	1362
Psp6I	CCWGG	2 cut(s)	55, 217
PspFI	CCCAGC	1 cut(s)	1069
PspGI	CCWGG	2 cut(s)	55, 217
PspN4I	GGNNCC	4 cut(s)	54, 324, 1116, 1282
PspPI	GGNCC	1 cut(s)	323
PstI	CTGCAG	1 cut(s)	1420
PsuI	RGATCY	1 cut(s)	565
PvuII	CAGCTG	3 cut(s)	494, 1073, 1421
RsaI	GTAC	2 cut(s)	740, 861
RsaNI	GTAC	2 cut(s)	739, 860
RseI	CAYNNNNRTG	2 cut(s)	657, 751
SapI	GCTCTTC	1 cut(s)	1241
SaqAI	TTAA	2 cut(s)	224, 257
SatI	GCNGC	3 cut(s)	555, 1125, 1419
Sau3AI	GATC	4 cut(s)	565, 631, 769, 1204
Sau96I	GGNCC	1 cut(s)	323
ScaI	AGTACT	2 cut(s)	740, 861
SchI	GAGTC	2 cut(s)	766, 991
ScrFI	CCNGG	3 cut(s)	57, 219, 1276
SduI	GDGCHC	1 cut(s)	888
SfaNI	GCATC	5 cut(s)	427, 541, 586, 671, 790
SfcI	CTRYAG	1 cut(s)	1416
SmiMI	CAYNNNNRTG	2 cut(s)	657, 751
SmlI	CTYRAG	1 cut(s)	223
SmoI	CTYRAG	1 cut(s)	223
SseBI	AGGCCT	1 cut(s)	1414
SsiI	CCGC	3 cut(s)	815, 1125, 1249
StuI	AGGCCT	1 cut(s)	1414
StyD4I	CCNGG	3 cut(s)	55, 217, 1274
StyI	CCWWGG	2 cut(s)	1139, 1369
TaaI	ACNGT	3 cut(s)	344, 835, 1192
TaiI	ACGT	2 cut(s)	190, 1365
TaqI	TCGA	2 cut(s)	44, 1212
TatI	WGTACW	2 cut(s)	738, 859
TauI	GCSGC	1 cut(s)	1127
TfiI	GAWTC	1 cut(s)	517
Tru1I	TTAA	2 cut(s)	224, 257
Tru9I	TTAA	2 cut(s)	224, 257
TscAI	CASTG	3 cut(s)	838, 925, 1387
TseFI	GTSAC	3 cut(s)	902, 1009, 1391
TseI	GCWGC	2 cut(s)	554, 1418
Tsp45I	GTSAC	3 cut(s)	902, 1009, 1391
TspGWI	ACGGA	5 cut(s)	449, 555, 576, 789, 942
TspRI	CASTG	3 cut(s)	838, 925, 1387
Vha464I	CTTAAG	1 cut(s)	223
XagI	CCTNNNNNAGG	1 cut(s)	849
XapI	RAATTY	3 cut(s)	544, 696, 958
XceI	RCATGY	2 cut(s)	607, 673
XmiI	GTMKAC	3 cut(s)	73, 1146, 1375
XmnI	GAANNNNTTC	1 cut(s)	527
ZrmI	AGTACT	2 cut(s)	740, 861
Zsp2I	ATGCAT	1 cut(s)	664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.