Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0003361

Physical Location & Seq

Genomic Coordinates Reverse (-)

11249167 .. 11249957

Gene Structure 791 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG057300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGACAACCACTGTAAACTATCCTTTTGGAGGTGGAGTACTCTCTCTTTCTACTGGAATTGTGCTCAACAATGAGATGGGTGACTTCTCAATTCTCACTGACATATCGCCAGACCATCTCCCTCCTACTCCGTCAAATTTCATTGAACCAATCAAAAGACCTTTATCTTCCATGACTCCTATTATAGTCACAAAGGATAATCAATTGGTTGGTGTGCTTGGAGGTAGTGGTGGTTTGAACATTATCCCAGCTGTAACTCAGGTGTTTATCAATTATTTCATATTGGGGATGGAACCTTTAGCCGCAGTTCAAAGTCCAAGGGTCTACCACAGGCTTTCAGATGAAAGAAAGCTCTTCTTGCAGGAGCGGGGTCATGAATTGCAGGCTAAAGCCGAGGGAGCCATCACTCAGCTCATTGTTCAAAGACTTGGAAACCCTATTCAAATGGGCAGGAAATGTGGTAGAAGTTCAAATGAAAATGTTTTCCATGGTATACTCACTGCTGTAAGTGACCCTAGAAAAGATGGAAGGCCTGCAGCTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002237 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005887 GO:0006082 GO:0006508 GO:0006518 GO:0006520 GO:0006536 GO:0006575 GO:0006749 GO:0006751 GO:0006790 GO:0006805 GO:0006807 GO:0006950 GO:0006979 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008242 GO:0009056 GO:0009064 GO:0009410 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009987 GO:0010033 GO:0010467 GO:0014070 GO:0016020 GO:0016021 GO:0016485 GO:0016740 GO:0016746 GO:0016755 GO:0016756 GO:0016787 GO:0019538 GO:0019752 GO:0031179 GO:0031224 GO:0031226 GO:0031638 GO:0032355 GO:0032496 GO:0032502 GO:0033554 GO:0033993 GO:0034097 GO:0034599 GO:0034612 GO:0034641 GO:0036374 GO:0042219 GO:0042221 GO:0043170 GO:0043171 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043648 GO:0044237 GO:0044238 GO:0044248 GO:0044273 GO:0044281 GO:0044421 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051604 GO:0051704 GO:0051707 GO:0051716 GO:0070011 GO:0070887 GO:0071466 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00430 ko00460 ko00480 ko00590 ko01100 map00430 map00460 map00480 map00590 map01100

Pfam Domains

Protein Families

G_glu_transpept

Protein Analysis

181

Amino Acids

19.57

Weight (kDa)

7.93

Isoelectric Point (pI)

38.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G_glu_transpept	PF01019	1 - 176	9.2e-40	Gamma-glutamyltranspeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29210 AT4G29210 AT4G39650
fragaria_vesca	FvH4_1g06610 FvH4_1g06610
malus_domestica	MD02G1069100.v1.1 MD15G1200700.v1.1
prunus_persica	Prupe.7G216500_v2.0.a1
pyrus_communis	pycom02g05470 pycom15g17820
rosa_chinensis	RchiOBHm_Chr1g0323641 RchiOBHm_Chr2g0092341 RchiOBHm_Chr2g0139001 RchiOBHm_Chr5g0064951
rosa_laevigata	RLG00000015286 RLG00000016301 RLG00000018659
rosa_multiflora	Rmu_sc0000461.1_g000012 Rmu_sc0000461.1_g000013 Rmu_sc0003289.1_g000009 Rmu_sc0006014.1_g000003 Rmu_sc0006014.1_g000004 Rmu_sc0010108.1_g000002
rosa_roxburghii	Rroxscaffold_3G00249440
rosa_rugosa	Rorug02G0025000 Rorug02G0025100
rosa_samantha	Rh1CG057300 Rh1DG061100 Rh2AG071000 Rh2BG070600 Rh2BG414200 Rh2CG072000 Rh2DG069500
rosa_wichuraiana	Rw0G021800 Rw2G006130 Rw2G032860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	367
AccI	GTMKAC	2 cut(s)	324, 493
AciI	CCGC	2 cut(s)	303, 367
AcsI	RAATTY	1 cut(s)	136
AfaI	GTAC	1 cut(s)	39
AfiI	CCNNNNNNNGG	1 cut(s)	29
AgsI	TTSAA	6 cut(s)	146, 238, 311, 422, 443, 471
AluBI	AGCT	4 cut(s)	251, 352, 412, 539
AluI	AGCT	4 cut(s)	251, 352, 412, 539
Alw21I	GWGCWC	1 cut(s)	66
AoxI	GGCC	1 cut(s)	530
ApeKI	GCWGC	1 cut(s)	536
ApoI	RAATTY	1 cut(s)	136
AsuHPI	GGTGA	1 cut(s)	92
Bbv12I	GWGCWC	1 cut(s)	66
BccI	CCATC	5 cut(s)	70, 123, 283, 410, 518
BfaI	CTAG	1 cut(s)	516
BfmI	CTRYAG	1 cut(s)	534
BisI	GCNGC	2 cut(s)	303, 537
BlsI	GCNGC	2 cut(s)	304, 538
BmcAI	AGTACT	1 cut(s)	39
BmiI	GGNNCC	2 cut(s)	294, 400
BsaJI	CCNNGG	3 cut(s)	317, 393, 487
BsaXI	ACNNNNNCTCC	2 cut(s)	21, 51
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
Bse1I	ACTGG	1 cut(s)	58
BseDI	CCNNGG	3 cut(s)	317, 393, 487
BseGI	GGATG	1 cut(s)	294
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseMII	CTCAG	2 cut(s)	272, 422
BseNI	ACTGG	1 cut(s)	58
BseYI	CCCAGC	1 cut(s)	247
BshFI	GGCC	1 cut(s)	532
BsiHKAI	GWGCWC	1 cut(s)	66
BslI	CCNNNNNNNGG	1 cut(s)	29
BsnI	GGCC	1 cut(s)	532
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp19I	CCATGG	1 cut(s)	487
BspACI	CCGC	2 cut(s)	303, 367
BspANI	GGCC	1 cut(s)	532
BspCNI	CTCAG	2 cut(s)	271, 421
BspHI	TCATGA	1 cut(s)	373
BspLI	GGNNCC	2 cut(s)	294, 400
BspMAI	CTGCAG	1 cut(s)	538
BspQI	GCTCTTC	1 cut(s)	359
BsrBI	CCGCTC	1 cut(s)	367
BsrI	ACTGG	1 cut(s)	58
BssECI	CCNNGG	3 cut(s)	317, 393, 487
BssNAI	GTATAC	1 cut(s)	494
BssT1I	CCWWGG	2 cut(s)	317, 487
Bst1107I	GTATAC	1 cut(s)	494
Bst4CI	ACNGT	1 cut(s)	13
Bst6I	CTCTTC	1 cut(s)	359
BstC8I	GCNNGC	2 cut(s)	384, 534
BstDEI	CTNAG	2 cut(s)	258, 408
BstDSI	CCRYGG	1 cut(s)	487
BstENI	CCTNNNNNAGG	1 cut(s)	27
BstF5I	GGATG	1 cut(s)	294
BstMWI	GCNNNNNNNGC	2 cut(s)	358, 398
BstSFI	CTRYAG	1 cut(s)	534
BstZ17I	GTATAC	1 cut(s)	494
BsuRI	GGCC	1 cut(s)	532
BtgI	CCRYGG	1 cut(s)	487
BtsCI	GGATG	1 cut(s)	294
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	3 cut(s)	9, 96, 498
Cac8I	GCNNGC	2 cut(s)	384, 534
CciI	TCATGA	1 cut(s)	373
Csp6I	GTAC	1 cut(s)	38
CviAII	CATG	3 cut(s)	172, 374, 488
CviQI	GTAC	1 cut(s)	38
DdeI	CTNAG	2 cut(s)	258, 408
Eam1104I	CTCTTC	1 cut(s)	359
EarI	CTCTTC	1 cut(s)	359
Eco130I	CCWWGG	2 cut(s)	317, 487
Eco147I	AGGCCT	1 cut(s)	532
EcoNI	CCTNNNNNAGG	1 cut(s)	27
EcoT14I	CCWWGG	2 cut(s)	317, 487
ErhI	CCWWGG	2 cut(s)	317, 487
FaeI	CATG	3 cut(s)	175, 377, 491
FaiI	YATR	8 cut(s)	104, 173, 185, 281, 375, 489, 494, 544
FalI	AAGNNNNNCTT	2 cut(s)	341, 373
FatI	CATG	3 cut(s)	171, 373, 487
FauI	CCCGC	1 cut(s)	360
FblI	GTMKAC	2 cut(s)	324, 493
Fnu4HI	GCNGC	2 cut(s)	303, 537
FokI	GGATG	1 cut(s)	301
Fsp4HI	GCNGC	2 cut(s)	303, 537
FspBI	CTAG	1 cut(s)	516
GluI	GCNGC	2 cut(s)	303, 537
GsaI	CCCAGC	1 cut(s)	251
HaeIII	GGCC	1 cut(s)	532
Hin1II	CATG	3 cut(s)	175, 377, 491
HinfI	GANTC	1 cut(s)	175
HphI	GGTGA	1 cut(s)	92
Hpy166II	GTNNAC	3 cut(s)	16, 325, 494
Hpy188I	TCNGA	1 cut(s)	340
Hpy188III	TCNNGA	1 cut(s)	374
Hpy8I	GTNNAC	3 cut(s)	16, 325, 494
HpyAV	CCTTC	1 cut(s)	522
HpyCH4III	ACNGT	1 cut(s)	13
HpyCH4V	TGCA	3 cut(s)	361, 382, 536
HpyF10VI	GCNNNNNNNGC	2 cut(s)	358, 398
HpyF3I	CTNAG	2 cut(s)	258, 408
Hsp92II	CATG	3 cut(s)	175, 377, 491
LguI	GCTCTTC	1 cut(s)	359
LmnI	GCTCC	2 cut(s)	364, 398
LpnPI	CCDG	8 cut(s)	39, 123, 245, 261, 316, 347, 368, 436
MaeI	CTAG	1 cut(s)	516
MaeIII	GTNAC	4 cut(s)	80, 187, 253, 509
MbiI	CCGCTC	1 cut(s)	367
MboII	GAAGA	2 cut(s)	159, 346
MfeI	CAATTG	1 cut(s)	203
MhlI	GDGCHC	1 cut(s)	66
MluCI	AATT	6 cut(s)	57, 90, 136, 203, 271, 377
MlyI	GAGTC	1 cut(s)	169
MnlI	CCTC	4 cut(s)	23, 132, 215, 388
MspA1I	CMGCKG	2 cut(s)	251, 539
MunI	CAATTG	1 cut(s)	203
MwoI	GCNNNNNNNGC	2 cut(s)	358, 398
NcoI	CCATGG	1 cut(s)	487
NlaIII	CATG	3 cut(s)	175, 377, 491
NlaIV	GGNNCC	2 cut(s)	294, 400
NmeAIII	GCCGAG	1 cut(s)	418
NmuCI	GTSAC	3 cut(s)	80, 187, 509
PagI	TCATGA	1 cut(s)	373
PceI	AGGCCT	1 cut(s)	532
PciSI	GCTCTTC	1 cut(s)	359
PkrI	GCNGC	2 cut(s)	304, 538
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PspFI	CCCAGC	1 cut(s)	247
PspN4I	GGNNCC	2 cut(s)	294, 400
PstI	CTGCAG	1 cut(s)	538
PvuII	CAGCTG	2 cut(s)	251, 539
RsaI	GTAC	1 cut(s)	39
RsaNI	GTAC	1 cut(s)	38
SapI	GCTCTTC	1 cut(s)	359
SatI	GCNGC	2 cut(s)	303, 537
ScaI	AGTACT	1 cut(s)	39
SchI	GAGTC	1 cut(s)	169
SduI	GDGCHC	1 cut(s)	66
SetI	ASST	9 cut(s)	34, 163, 226, 253, 264, 298, 354, 414, 541
SfcI	CTRYAG	1 cut(s)	534
Sse9I	AATT	6 cut(s)	57, 90, 136, 203, 271, 377
SseBI	AGGCCT	1 cut(s)	532
SsiI	CCGC	2 cut(s)	303, 367
SspMI	CTAG	1 cut(s)	516
StuI	AGGCCT	1 cut(s)	532
StyI	CCWWGG	2 cut(s)	317, 487
TaaI	ACNGT	1 cut(s)	13
TasI	AATT	6 cut(s)	57, 90, 136, 203, 271, 377
TatI	WGTACW	1 cut(s)	37
TauI	GCSGC	1 cut(s)	305
TscAI	CASTG	3 cut(s)	16, 103, 505
TseFI	GTSAC	3 cut(s)	80, 187, 509
TseI	GCWGC	1 cut(s)	536
Tsp45I	GTSAC	3 cut(s)	80, 187, 509
TspDTI	ATGAA	5 cut(s)	130, 268, 357, 390, 489
TspGWI	ACGGA	1 cut(s)	120
TspRI	CASTG	3 cut(s)	16, 103, 505
XagI	CCTNNNNNAGG	1 cut(s)	27
XapI	RAATTY	1 cut(s)	136
XmiI	GTMKAC	2 cut(s)	324, 493
XspI	CTAG	1 cut(s)	516
ZrmI	AGTACT	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.