Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003361

Physical Location & Seq

Genomic Coordinates Reverse (-)

58486421 .. 58487337

Gene Structure 917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG414200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGTTTGCAATCCGAATGAACTTGGGTGATCCTGCTTTTGTAGATACCCATGAATATGCATCTGATATGCTTTCTCCATCCTTTGCTAAGGAAATTCAGCAGAAGATATTTGACAACACAACTTTCCCACTAGAGTACTATTCATACAGGTGGAGTCAGCTCAGAGATCACGGAACAAGTCATTTCTGCATAGTAGATGTAGACAGAAATGCGGTATCAATGACAACCACTGTAAACTATCCTTTTGGAGGTGGAGTACTCTCTCCTTCTACTGGAATTGTGCTCAACAATGAGAAGGGTGACTTCTCAAGTCCCACTGACATATCGCCAGACCATCTCCCTCCTGCTCCGTCAAATTTCATTGAACCAATCAAAAGACCTTTATCGTCCATGACTCCTATTATAGTCACAAAGGATAATCAATTGGTTGGTGTGCTTGGAGGTAGTGGTGGTTTGAACATTATCCCAGCTGTAACTCAGGTGTTTATCAATTATTTCATATTGGGGATGGAACCTTTAGCCGCAGTTCAAAGTCCAAGGGTCTACCACAGGCTAATACCAAACATAGTGTCATATGAAAACTGGACTGTAATCGATGGAGATCATATCCGAGCTTTCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002237 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005887 GO:0006082 GO:0006508 GO:0006518 GO:0006520 GO:0006536 GO:0006575 GO:0006749 GO:0006751 GO:0006790 GO:0006805 GO:0006807 GO:0006950 GO:0006979 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008242 GO:0009056 GO:0009064 GO:0009410 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009987 GO:0010033 GO:0010467 GO:0014070 GO:0016020 GO:0016021 GO:0016485 GO:0016740 GO:0016746 GO:0016755 GO:0016756 GO:0016787 GO:0019538 GO:0019752 GO:0031179 GO:0031224 GO:0031226 GO:0031638 GO:0032355 GO:0032496 GO:0032502 GO:0033554 GO:0033993 GO:0034097 GO:0034599 GO:0034612 GO:0034641 GO:0036374 GO:0042219 GO:0042221 GO:0043170 GO:0043171 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043648 GO:0044237 GO:0044238 GO:0044248 GO:0044273 GO:0044281 GO:0044421 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051604 GO:0051704 GO:0051707 GO:0051716 GO:0070011 GO:0070887 GO:0071466 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00430 ko00460 ko00480 ko00590 ko01100 map00430 map00460 map00480 map00590 map01100

Pfam Domains

Protein Families

G_glu_transpept

Protein Analysis

207

Amino Acids

23.01

Weight (kDa)

5.4

Isoelectric Point (pI)

45.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G_glu_transpept	PF01019	1 - 194	6.7e-65	Gamma-glutamyltranspeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29210 AT4G29210 AT4G39650
fragaria_vesca	FvH4_1g06610 FvH4_1g06610
malus_domestica	MD02G1069100.v1.1 MD15G1200700.v1.1
prunus_persica	Prupe.7G216500_v2.0.a1
pyrus_communis	pycom02g05470 pycom15g17820
rosa_chinensis	RchiOBHm_Chr1g0323641 RchiOBHm_Chr2g0092341 RchiOBHm_Chr2g0139001 RchiOBHm_Chr5g0064951
rosa_laevigata	RLG00000015286 RLG00000016301 RLG00000018659
rosa_multiflora	Rmu_sc0000461.1_g000012 Rmu_sc0000461.1_g000013 Rmu_sc0003289.1_g000009 Rmu_sc0006014.1_g000003 Rmu_sc0006014.1_g000004 Rmu_sc0010108.1_g000002
rosa_roxburghii	Rroxscaffold_3G00249440
rosa_rugosa	Rorug02G0025000 Rorug02G0025100
rosa_samantha	Rh1CG057300 Rh1DG061100 Rh2AG071000 Rh2BG070600 Rh2BG414200 Rh2CG072000 Rh2DG069500
rosa_wichuraiana	Rw0G021800 Rw2G006130 Rw2G032860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	201, 543
AciI	CCGC	2 cut(s)	212, 522
AclWI	GGATC	1 cut(s)	23
AcsI	RAATTY	2 cut(s)	93, 355
AfaI	GTAC	2 cut(s)	137, 258
AfiI	CCNNNNNNNGG	2 cut(s)	248, 272
AgsI	TTSAA	3 cut(s)	365, 457, 530
AluBI	AGCT	3 cut(s)	160, 470, 614
AluI	AGCT	3 cut(s)	160, 470, 614
Alw21I	GWGCWC	1 cut(s)	285
AlwI	GGATC	1 cut(s)	23
ApoI	RAATTY	2 cut(s)	93, 355
ArsI	GACNNNNNNTTYG	2 cut(s)	554, 586
AsuHPI	GGTGA	2 cut(s)	38, 311
Bbv12I	GWGCWC	1 cut(s)	285
BccI	CCATC	4 cut(s)	85, 342, 502, 590
BfaI	CTAG	1 cut(s)	131
BisI	GCNGC	1 cut(s)	522
BlsI	GCNGC	1 cut(s)	523
BmcAI	AGTACT	2 cut(s)	137, 258
BmiI	GGNNCC	1 cut(s)	513
BmsI	GCATC	1 cut(s)	68
Bpu10I	CCTNAGC	1 cut(s)	87
BpuEI	CTTGAG	1 cut(s)	292
Bsa29I	ATCGAT	1 cut(s)	594
BsaBI	GATNNNNATC	1 cut(s)	600
BsaJI	CCNNGG	1 cut(s)	536
BsaXI	ACNNNNNCTCC	2 cut(s)	240, 270
Bsc4I	CCNNNNNNNGG	2 cut(s)	248, 272
Bse1I	ACTGG	2 cut(s)	277, 587
Bse8I	GATNNNNATC	1 cut(s)	600
BseCI	ATCGAT	1 cut(s)	594
BseDI	CCNNGG	1 cut(s)	536
BseGI	GGATG	2 cut(s)	77, 513
BseJI	GATNNNNATC	1 cut(s)	600
BseLI	CCNNNNNNNGG	2 cut(s)	248, 272
BseMII	CTCAG	2 cut(s)	175, 491
BseNI	ACTGG	2 cut(s)	277, 587
BseYI	CCCAGC	1 cut(s)	466
BshVI	ATCGAT	1 cut(s)	594
BsiHKAI	GWGCWC	1 cut(s)	285
BslFI	GGGAC	1 cut(s)	297
BslI	CCNNNNNNNGG	2 cut(s)	248, 272
BsmFI	GGGAC	1 cut(s)	297
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp143I	GATC	3 cut(s)	28, 166, 601
BspACI	CCGC	2 cut(s)	212, 522
BspCNI	CTCAG	2 cut(s)	174, 490
BspDI	ATCGAT	1 cut(s)	594
BspLI	GGNNCC	1 cut(s)	513
BspPI	GGATC	1 cut(s)	23
BsrI	ACTGG	2 cut(s)	277, 587
BssECI	CCNNGG	1 cut(s)	536
BssMI	GATC	3 cut(s)	28, 166, 601
BssT1I	CCWWGG	1 cut(s)	536
Bst4CI	ACNGT	2 cut(s)	232, 589
BstDEI	CTNAG	3 cut(s)	87, 161, 477
BstENI	CCTNNNNNAGG	1 cut(s)	246
BstF5I	GGATG	2 cut(s)	77, 513
BstKTI	GATC	3 cut(s)	31, 169, 604
BstMBI	GATC	3 cut(s)	28, 166, 601
Bsu15I	ATCGAT	1 cut(s)	594
BsuTUI	ATCGAT	1 cut(s)	594
BtsCI	GGATG	2 cut(s)	77, 513
BtsIMutI	CAGTG	2 cut(s)	228, 315
ClaI	ATCGAT	1 cut(s)	594
Csp6I	GTAC	2 cut(s)	136, 257
CviAII	CATG	2 cut(s)	50, 391
CviJI	RGCY	5 cut(s)	160, 470, 521, 553, 614
CviKI_1	RGCY	5 cut(s)	160, 470, 521, 553, 614
CviQI	GTAC	2 cut(s)	136, 257
DdeI	CTNAG	3 cut(s)	87, 161, 477
DpnI	GATC	3 cut(s)	30, 168, 603
DpnII	GATC	3 cut(s)	28, 166, 601
Eco130I	CCWWGG	1 cut(s)	536
EcoNI	CCTNNNNNAGG	1 cut(s)	246
EcoT14I	CCWWGG	1 cut(s)	536
EcoT22I	ATGCAT	1 cut(s)	61
ErhI	CCWWGG	1 cut(s)	536
FaeI	CATG	2 cut(s)	53, 394
FalI	AAGNNNNNCTT	2 cut(s)	287, 319
FaqI	GGGAC	1 cut(s)	297
FatI	CATG	2 cut(s)	49, 390
FauNDI	CATATG	1 cut(s)	574
FblI	GTMKAC	2 cut(s)	201, 543
Fnu4HI	GCNGC	1 cut(s)	522
FokI	GGATG	2 cut(s)	64, 520
Fsp4HI	GCNGC	1 cut(s)	522
FspBI	CTAG	1 cut(s)	131
GluI	GCNGC	1 cut(s)	522
GsaI	CCCAGC	1 cut(s)	470
Hin1II	CATG	2 cut(s)	53, 394
HinfI	GANTC	2 cut(s)	154, 394
HphI	GGTGA	2 cut(s)	38, 311
Hpy166II	GTNNAC	3 cut(s)	202, 235, 544
Hpy188I	TCNGA	5 cut(s)	14, 64, 164, 611, 620
Hpy8I	GTNNAC	3 cut(s)	202, 235, 544
HpyAV	CCTTC	2 cut(s)	276, 289
HpyCH4III	ACNGT	2 cut(s)	232, 589
HpyCH4V	TGCA	3 cut(s)	8, 59, 189
HpyF3I	CTNAG	3 cut(s)	87, 161, 477
Hsp92II	CATG	2 cut(s)	53, 394
Kzo9I	GATC	3 cut(s)	28, 166, 601
LmnI	GCTCC	1 cut(s)	352
LpnPI	CCDG	9 cut(s)	45, 133, 258, 342, 357, 464, 480, 535, 568
LweI	GCATC	1 cut(s)	68
MaeI	CTAG	1 cut(s)	131
MaeIII	GTNAC	3 cut(s)	299, 406, 472
MalI	GATC	3 cut(s)	30, 168, 603
MboI	GATC	3 cut(s)	28, 166, 601
MboII	GAAGA	1 cut(s)	115
MfeI	CAATTG	1 cut(s)	422
MhlI	GDGCHC	1 cut(s)	285
MluCI	AATT	5 cut(s)	93, 276, 355, 422, 490
MlyI	GAGTC	2 cut(s)	163, 388
MnlI	CCTC	3 cut(s)	242, 351, 434
Mph1103I	ATGCAT	1 cut(s)	61
MslI	CAYNNNNRTG	2 cut(s)	54, 148
MspA1I	CMGCKG	1 cut(s)	470
MunI	CAATTG	1 cut(s)	422
NdeI	CATATG	1 cut(s)	574
NdeII	GATC	3 cut(s)	28, 166, 601
NlaIII	CATG	2 cut(s)	53, 394
NlaIV	GGNNCC	1 cut(s)	513
NmuCI	GTSAC	2 cut(s)	299, 406
NsiI	ATGCAT	1 cut(s)	61
PkrI	GCNGC	1 cut(s)	523
PleI	GAGTC	2 cut(s)	162, 388
PpsI	GAGTC	2 cut(s)	162, 388
PspFI	CCCAGC	1 cut(s)	466
PspN4I	GGNNCC	1 cut(s)	513
PvuII	CAGCTG	1 cut(s)	470
RsaI	GTAC	2 cut(s)	137, 258
RsaNI	GTAC	2 cut(s)	136, 257
RseI	CAYNNNNRTG	2 cut(s)	54, 148
SatI	GCNGC	1 cut(s)	522
Sau3AI	GATC	3 cut(s)	28, 166, 601
ScaI	AGTACT	2 cut(s)	137, 258
SchI	GAGTC	2 cut(s)	163, 388
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	9 cut(s)	152, 162, 253, 382, 445, 472, 483, 517, 616
SfaNI	GCATC	1 cut(s)	68
SmiMI	CAYNNNNRTG	2 cut(s)	54, 148
SmlI	CTYRAG	1 cut(s)	307
SmoI	CTYRAG	1 cut(s)	307
Sse9I	AATT	5 cut(s)	93, 276, 355, 422, 490
SsiI	CCGC	2 cut(s)	212, 522
SspMI	CTAG	1 cut(s)	131
StyI	CCWWGG	1 cut(s)	536
TaaI	ACNGT	2 cut(s)	232, 589
TaqI	TCGA	1 cut(s)	594
TasI	AATT	5 cut(s)	93, 276, 355, 422, 490
TatI	WGTACW	2 cut(s)	135, 256
TauI	GCSGC	1 cut(s)	524
TscAI	CASTG	2 cut(s)	235, 322
TseFI	GTSAC	2 cut(s)	299, 406
Tsp45I	GTSAC	2 cut(s)	299, 406
TspDTI	ATGAA	6 cut(s)	32, 66, 132, 349, 487, 591
TspGWI	ACGGA	2 cut(s)	186, 339
TspRI	CASTG	2 cut(s)	235, 322
XagI	CCTNNNNNAGG	1 cut(s)	246
XapI	RAATTY	2 cut(s)	93, 355
XmiI	GTMKAC	2 cut(s)	201, 543
XspI	CTAG	1 cut(s)	131
ZrmI	AGTACT	2 cut(s)	137, 258
Zsp2I	ATGCAT	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.