Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000461.1

Orthogroup ID

OG0003361

Physical Location & Seq

Genomic Coordinates Forward (+)

57060 .. 57850

Gene Structure 791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000461.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

atgacaaccatcgtaaactatctttttggaggtggagtactctctccttctactggaattgtgctcaacaatgagatgtgtgacttctcaattcccactgacatatcgccagaccatctccctcctgctccgtcaaatttcattgaaccaatcaaaagtcctttatcttccatgactcctattatagtcacagaggataatcaattggttggtgtgcttggaggtagtggtggtttgaacattatcccagctatagctcaggtgtttatcaattatttcatattggggatggaacctttagccgcagttcaaagtccaagggtctaccacagggagcggggtcatgaattgcaggctaaagtcgggggagccatcactcaactcattgttcaaatacttggaaaccctattcagatgggcaggaaatgtggtagaagttcaaatgaaaacgtattccatggtatacttactgctgtaagtgaccctagaaaagatggaaggcctgtagctgtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002237 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005887 GO:0006082 GO:0006508 GO:0006518 GO:0006520 GO:0006536 GO:0006575 GO:0006749 GO:0006751 GO:0006790 GO:0006805 GO:0006807 GO:0006950 GO:0006979 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008242 GO:0009056 GO:0009064 GO:0009410 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009987 GO:0010033 GO:0010467 GO:0014070 GO:0016020 GO:0016021 GO:0016485 GO:0016740 GO:0016746 GO:0016755 GO:0016756 GO:0016787 GO:0019538 GO:0019752 GO:0031179 GO:0031224 GO:0031226 GO:0031638 GO:0032355 GO:0032496 GO:0032502 GO:0033554 GO:0033993 GO:0034097 GO:0034599 GO:0034612 GO:0034641 GO:0036374 GO:0042219 GO:0042221 GO:0043170 GO:0043171 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043648 GO:0044237 GO:0044238 GO:0044248 GO:0044273 GO:0044281 GO:0044421 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051604 GO:0051704 GO:0051707 GO:0051716 GO:0070011 GO:0070887 GO:0071466 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00430 ko00460 ko00480 ko00590 ko01100 map00430 map00460 map00480 map00590 map01100

Pfam Domains

Protein Families

G_glu_transpept

Protein Analysis

171

Amino Acids

18.21

Weight (kDa)

6.04

Isoelectric Point (pI)

44.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29210 AT4G29210 AT4G39650
fragaria_vesca	FvH4_1g06610 FvH4_1g06610
malus_domestica	MD02G1069100.v1.1 MD15G1200700.v1.1
prunus_persica	Prupe.7G216500_v2.0.a1
pyrus_communis	pycom02g05470 pycom15g17820
rosa_chinensis	RchiOBHm_Chr1g0323641 RchiOBHm_Chr2g0092341 RchiOBHm_Chr2g0139001 RchiOBHm_Chr5g0064951
rosa_laevigata	RLG00000015286 RLG00000016301 RLG00000018659
rosa_multiflora	Rmu_sc0000461.1_g000012 Rmu_sc0000461.1_g000013 Rmu_sc0003289.1_g000009 Rmu_sc0006014.1_g000003 Rmu_sc0006014.1_g000004 Rmu_sc0010108.1_g000002
rosa_roxburghii	Rroxscaffold_3G00249440
rosa_rugosa	Rorug02G0025000 Rorug02G0025100
rosa_samantha	Rh1CG057300 Rh1DG061100 Rh2AG071000 Rh2BG070600 Rh2BG414200 Rh2CG072000 Rh2DG069500
rosa_wichuraiana	Rw0G021800 Rw2G006130 Rw2G032860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	337
AccI	GTMKAC	2 cut(s)	324, 463
AciI	CCGC	2 cut(s)	303, 337
AcsI	RAATTY	1 cut(s)	136
AfaI	GTAC	1 cut(s)	39
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgsI	TTSAA	5 cut(s)	146, 238, 311, 392, 441
AluBI	AGCT	3 cut(s)	251, 257, 509
AluI	AGCT	3 cut(s)	251, 257, 509
Alw21I	GWGCWC	1 cut(s)	66
AoxI	GGCC	1 cut(s)	500
ApoI	RAATTY	1 cut(s)	136
Bbv12I	GWGCWC	1 cut(s)	66
BccI	CCATC	6 cut(s)	17, 123, 283, 380, 409, 488
BfaI	CTAG	1 cut(s)	486
BfmI	CTRYAG	2 cut(s)	252, 504
BisI	GCNGC	1 cut(s)	303
BlsI	GCNGC	1 cut(s)	304
BmcAI	AGTACT	1 cut(s)	39
BmiI	GGNNCC	2 cut(s)	294, 370
Bpu10I	CCTNAGC	1 cut(s)	258
BsaJI	CCNNGG	2 cut(s)	317, 457
BsaXI	ACNNNNNCTCC	2 cut(s)	21, 51
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	58
BseDI	CCNNGG	2 cut(s)	317, 457
BseGI	GGATG	1 cut(s)	294
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMII	CTCAG	1 cut(s)	272
BseNI	ACTGG	1 cut(s)	58
BseYI	CCCAGC	1 cut(s)	247
BshFI	GGCC	1 cut(s)	502
BsiHKAI	GWGCWC	1 cut(s)	66
BslI	CCNNNNNNNGG	1 cut(s)	53
BsnI	GGCC	1 cut(s)	502
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp19I	CCATGG	1 cut(s)	457
BspACI	CCGC	2 cut(s)	303, 337
BspANI	GGCC	1 cut(s)	502
BspCNI	CTCAG	1 cut(s)	271
BspHI	TCATGA	1 cut(s)	343
BspLI	GGNNCC	2 cut(s)	294, 370
BsrBI	CCGCTC	1 cut(s)	337
BsrI	ACTGG	1 cut(s)	58
BssECI	CCNNGG	2 cut(s)	317, 457
BssNAI	GTATAC	1 cut(s)	464
BssT1I	CCWWGG	2 cut(s)	317, 457
Bst1107I	GTATAC	1 cut(s)	464
BstC8I	GCNNGC	1 cut(s)	354
BstDEI	CTNAG	1 cut(s)	258
BstDSI	CCRYGG	1 cut(s)	457
BstF5I	GGATG	1 cut(s)	294
BstSFI	CTRYAG	2 cut(s)	252, 504
BstZ17I	GTATAC	1 cut(s)	464
BsuRI	GGCC	1 cut(s)	502
BtgI	CCRYGG	1 cut(s)	457
BtsCI	GGATG	1 cut(s)	294
BtsIMutI	CAGTG	1 cut(s)	96
Cac8I	GCNNGC	1 cut(s)	354
CciI	TCATGA	1 cut(s)	343
Csp6I	GTAC	1 cut(s)	38
CviAII	CATG	3 cut(s)	172, 344, 458
CviJI	RGCY	7 cut(s)	251, 257, 302, 356, 371, 502, 509
CviKI_1	RGCY	7 cut(s)	251, 257, 302, 356, 371, 502, 509
CviQI	GTAC	1 cut(s)	38
DdeI	CTNAG	1 cut(s)	258
Eco130I	CCWWGG	2 cut(s)	317, 457
Eco147I	AGGCCT	1 cut(s)	502
EcoT14I	CCWWGG	2 cut(s)	317, 457
ErhI	CCWWGG	2 cut(s)	317, 457
FaeI	CATG	3 cut(s)	175, 347, 461
FaiI	YATR	9 cut(s)	104, 173, 185, 254, 281, 345, 459, 464, 514
FatI	CATG	3 cut(s)	171, 343, 457
FauI	CCCGC	1 cut(s)	330
FblI	GTMKAC	2 cut(s)	324, 463
Fnu4HI	GCNGC	1 cut(s)	303
FokI	GGATG	1 cut(s)	301
Fsp4HI	GCNGC	1 cut(s)	303
FspBI	CTAG	1 cut(s)	486
GluI	GCNGC	1 cut(s)	303
GsaI	CCCAGC	1 cut(s)	251
HaeIII	GGCC	1 cut(s)	502
Hin1II	CATG	3 cut(s)	175, 347, 461
HinfI	GANTC	1 cut(s)	175
Hpy166II	GTNNAC	3 cut(s)	16, 325, 464
Hpy188I	TCNGA	1 cut(s)	414
Hpy188III	TCNNGA	1 cut(s)	344
Hpy8I	GTNNAC	3 cut(s)	16, 325, 464
HpyAV	CCTTC	2 cut(s)	57, 492
HpyCH4IV	ACGT	1 cut(s)	450
HpyCH4V	TGCA	1 cut(s)	352
HpyF3I	CTNAG	1 cut(s)	258
HpySE526I	ACGT	1 cut(s)	450
Hsp92II	CATG	3 cut(s)	175, 347, 461
LmnI	GCTCC	3 cut(s)	133, 334, 368
LpnPI	CCDG	8 cut(s)	39, 123, 138, 245, 261, 316, 338, 406
MaeI	CTAG	1 cut(s)	486
MaeII	ACGT	1 cut(s)	450
MaeIII	GTNAC	3 cut(s)	80, 187, 479
MbiI	CCGCTC	1 cut(s)	337
MboII	GAAGA	1 cut(s)	159
MfeI	CAATTG	1 cut(s)	203
MhlI	GDGCHC	1 cut(s)	66
MluCI	AATT	6 cut(s)	57, 90, 136, 203, 271, 347
MlyI	GAGTC	1 cut(s)	169
MnlI	CCTC	4 cut(s)	23, 132, 187, 215
MunI	CAATTG	1 cut(s)	203
NcoI	CCATGG	1 cut(s)	457
NlaIII	CATG	3 cut(s)	175, 347, 461
NlaIV	GGNNCC	2 cut(s)	294, 370
NmuCI	GTSAC	3 cut(s)	80, 187, 479
PagI	TCATGA	1 cut(s)	343
PceI	AGGCCT	1 cut(s)	502
PkrI	GCNGC	1 cut(s)	304
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PspFI	CCCAGC	1 cut(s)	247
PspN4I	GGNNCC	2 cut(s)	294, 370
RsaI	GTAC	1 cut(s)	39
RsaNI	GTAC	1 cut(s)	38
SatI	GCNGC	1 cut(s)	303
ScaI	AGTACT	1 cut(s)	39
SchI	GAGTC	1 cut(s)	169
SduI	GDGCHC	1 cut(s)	66
SetI	ASST	8 cut(s)	34, 226, 253, 259, 264, 298, 453, 511
SfcI	CTRYAG	2 cut(s)	252, 504
Sse9I	AATT	6 cut(s)	57, 90, 136, 203, 271, 347
SseBI	AGGCCT	1 cut(s)	502
SsiI	CCGC	2 cut(s)	303, 337
SspMI	CTAG	1 cut(s)	486
StuI	AGGCCT	1 cut(s)	502
StyI	CCWWGG	2 cut(s)	317, 457
TaiI	ACGT	1 cut(s)	453
TasI	AATT	6 cut(s)	57, 90, 136, 203, 271, 347
TatI	WGTACW	1 cut(s)	37
TauI	GCSGC	1 cut(s)	305
TscAI	CASTG	1 cut(s)	103
TseFI	GTSAC	3 cut(s)	80, 187, 479
Tsp45I	GTSAC	3 cut(s)	80, 187, 479
TspDTI	ATGAA	4 cut(s)	130, 268, 360, 459
TspGWI	ACGGA	1 cut(s)	120
TspRI	CASTG	1 cut(s)	103
XapI	RAATTY	1 cut(s)	136
XmiI	GTMKAC	2 cut(s)	324, 463
XspI	CTAG	1 cut(s)	486
ZrmI	AGTACT	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.