Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003361

Physical Location & Seq

Genomic Coordinates Reverse (-)

53929144 .. 53929936

Gene Structure 793 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G032860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGACAACCACTGTAAACTATCCTTTTGGAGGTGGAGTACTCTCTCCTTCTACTGGAATTGTGCTCAACAATGAGATGGGTGACTTCTCAAGTCCCACTGACATATCGCCAGACCATCTCCCTCCTGCTCCGTCAAATTTCATTGAACCAATCAAAAGACCTTTATCTTCTATGACTCCTATTATAGTCACAAAGGATAATCAATTGGTTGGTGTGCTTGGAGGTAGTGGTGGTTTGAACATTATCCTAGCTGTAACTCAGGTGTTTATCAATTATTTCATATTGGGGATGGAACCTTTAGCCGCAGTTCAAAGTCCAAGGGTCTACCACAGGCTAATACCAAACATAGTGTCATATGAAAACTGGACTGTAATCGATGGAGATCATATCCGACCGGGGGGACCCATCACTCAGCTCATTGTTCAAAGACTTGGAAACCCTATTCAGATGGGCAGGAAATGTGGTAGAAGTTCAAATGAAAACGTTTTCCATGGTATACTCACTGCTGTAAGTGACCCTAGAAAAGATGGAAGGCCTGCAGCTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002237 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005887 GO:0006082 GO:0006508 GO:0006518 GO:0006520 GO:0006536 GO:0006575 GO:0006749 GO:0006751 GO:0006790 GO:0006805 GO:0006807 GO:0006950 GO:0006979 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008242 GO:0009056 GO:0009064 GO:0009410 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009987 GO:0010033 GO:0010467 GO:0014070 GO:0016020 GO:0016021 GO:0016485 GO:0016740 GO:0016746 GO:0016755 GO:0016756 GO:0016787 GO:0019538 GO:0019752 GO:0031179 GO:0031224 GO:0031226 GO:0031638 GO:0032355 GO:0032496 GO:0032502 GO:0033554 GO:0033993 GO:0034097 GO:0034599 GO:0034612 GO:0034641 GO:0036374 GO:0042219 GO:0042221 GO:0043170 GO:0043171 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043648 GO:0044237 GO:0044238 GO:0044248 GO:0044273 GO:0044281 GO:0044421 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051604 GO:0051704 GO:0051707 GO:0051716 GO:0070011 GO:0070887 GO:0071466 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00430 ko00460 ko00480 ko00590 ko01100 map00430 map00460 map00480 map00590 map01100

Pfam Domains

Protein Families

G_glu_transpept

Protein Analysis

182

Amino Acids

19.54

Weight (kDa)

6.9

Isoelectric Point (pI)

47.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G_glu_transpept	PF01019	1 - 177	1.4e-42	Gamma-glutamyltranspeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29210 AT4G29210 AT4G39650
fragaria_vesca	FvH4_1g06610 FvH4_1g06610
malus_domestica	MD02G1069100.v1.1 MD15G1200700.v1.1
prunus_persica	Prupe.7G216500_v2.0.a1
pyrus_communis	pycom02g05470 pycom15g17820
rosa_chinensis	RchiOBHm_Chr1g0323641 RchiOBHm_Chr2g0092341 RchiOBHm_Chr2g0139001 RchiOBHm_Chr5g0064951
rosa_laevigata	RLG00000015286 RLG00000016301 RLG00000018659
rosa_multiflora	Rmu_sc0000461.1_g000012 Rmu_sc0000461.1_g000013 Rmu_sc0003289.1_g000009 Rmu_sc0006014.1_g000003 Rmu_sc0006014.1_g000004 Rmu_sc0010108.1_g000002
rosa_roxburghii	Rroxscaffold_3G00249440
rosa_rugosa	Rorug02G0025000 Rorug02G0025100
rosa_samantha	Rh1CG057300 Rh1DG061100 Rh2AG071000 Rh2BG070600 Rh2BG414200 Rh2CG072000 Rh2DG069500
rosa_wichuraiana	Rw0G021800 Rw2G006130 Rw2G032860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	324, 496
AciI	CCGC	1 cut(s)	303
AclI	AACGTT	1 cut(s)	483
AcsI	RAATTY	1 cut(s)	136
AfaI	GTAC	1 cut(s)	39
AfiI	CCNNNNNNNGG	3 cut(s)	29, 53, 397
AgsI	TTSAA	5 cut(s)	146, 238, 311, 425, 474
AluBI	AGCT	3 cut(s)	251, 415, 542
AluI	AGCT	3 cut(s)	251, 415, 542
Alw21I	GWGCWC	1 cut(s)	66
AoxI	GGCC	1 cut(s)	533
ApeKI	GCWGC	1 cut(s)	539
ApoI	RAATTY	1 cut(s)	136
ArsI	GACNNNNNNTTYG	2 cut(s)	335, 367
AspS9I	GGNCC	1 cut(s)	401
AsuC2I	CCSGG	1 cut(s)	396
AsuHPI	GGTGA	1 cut(s)	92
AvaII	GGWCC	1 cut(s)	401
Bbv12I	GWGCWC	1 cut(s)	66
BccI	CCATC	7 cut(s)	70, 123, 283, 371, 413, 442, 521
BcnI	CCSGG	1 cut(s)	396
BfaI	CTAG	2 cut(s)	248, 519
BfmI	CTRYAG	1 cut(s)	537
BisI	GCNGC	2 cut(s)	303, 540
BlsI	GCNGC	2 cut(s)	304, 541
BmcAI	AGTACT	1 cut(s)	39
Bme1390I	CCNGG	1 cut(s)	396
Bme18I	GGWCC	1 cut(s)	401
BmgT120I	GGNCC	1 cut(s)	401
BmiI	GGNNCC	3 cut(s)	294, 402, 403
BmrFI	CCNGG	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	73
BpuMI	CCSGG	1 cut(s)	396
Bsa29I	ATCGAT	1 cut(s)	375
BsaBI	GATNNNNATC	1 cut(s)	381
BsaJI	CCNNGG	3 cut(s)	317, 395, 490
BsaXI	ACNNNNNCTCC	2 cut(s)	21, 51
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 53, 397
Bse1I	ACTGG	2 cut(s)	58, 368
Bse8I	GATNNNNATC	1 cut(s)	381
BseCI	ATCGAT	1 cut(s)	375
BseDI	CCNNGG	3 cut(s)	317, 395, 490
BseGI	GGATG	1 cut(s)	294
BseJI	GATNNNNATC	1 cut(s)	381
BseLI	CCNNNNNNNGG	3 cut(s)	29, 53, 397
BseMII	CTCAG	2 cut(s)	272, 425
BseNI	ACTGG	2 cut(s)	58, 368
Bsh1285I	CGRYCG	1 cut(s)	395
BshFI	GGCC	1 cut(s)	535
BshVI	ATCGAT	1 cut(s)	375
BsiEI	CGRYCG	1 cut(s)	395
BsiHKAI	GWGCWC	1 cut(s)	66
BsiSI	CCGG	1 cut(s)	395
BslFI	GGGAC	2 cut(s)	78, 414
BslI	CCNNNNNNNGG	3 cut(s)	29, 53, 397
BsmFI	GGGAC	2 cut(s)	78, 414
BsnI	GGCC	1 cut(s)	535
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp143I	GATC	1 cut(s)	382
Bsp19I	CCATGG	1 cut(s)	490
BspACI	CCGC	1 cut(s)	303
BspANI	GGCC	1 cut(s)	535
BspCNI	CTCAG	2 cut(s)	271, 424
BspDI	ATCGAT	1 cut(s)	375
BspLI	GGNNCC	3 cut(s)	294, 402, 403
BspMAI	CTGCAG	1 cut(s)	541
BsrI	ACTGG	2 cut(s)	58, 368
BssECI	CCNNGG	3 cut(s)	317, 395, 490
BssMI	GATC	1 cut(s)	382
BssNAI	GTATAC	1 cut(s)	497
BssT1I	CCWWGG	2 cut(s)	317, 490
Bst1107I	GTATAC	1 cut(s)	497
Bst4CI	ACNGT	2 cut(s)	13, 370
BstC8I	GCNNGC	1 cut(s)	537
BstDEI	CTNAG	2 cut(s)	258, 411
BstDSI	CCRYGG	1 cut(s)	490
BstENI	CCTNNNNNAGG	1 cut(s)	27
BstF5I	GGATG	1 cut(s)	294
BstKTI	GATC	1 cut(s)	385
BstMBI	GATC	1 cut(s)	382
BstMCI	CGRYCG	1 cut(s)	395
BstSCI	CCNGG	1 cut(s)	394
BstSFI	CTRYAG	1 cut(s)	537
BstZ17I	GTATAC	1 cut(s)	497
Bsu15I	ATCGAT	1 cut(s)	375
BsuRI	GGCC	1 cut(s)	535
BsuTUI	ATCGAT	1 cut(s)	375
BtgI	CCRYGG	1 cut(s)	490
BtsCI	GGATG	1 cut(s)	294
BtsI	GCAGTG	1 cut(s)	501
BtsIMutI	CAGTG	3 cut(s)	9, 96, 501
Cac8I	GCNNGC	1 cut(s)	537
Cfr13I	GGNCC	1 cut(s)	401
ClaI	ATCGAT	1 cut(s)	375
Csp6I	GTAC	1 cut(s)	38
CviAII	CATG	1 cut(s)	491
CviJI	RGCY	6 cut(s)	251, 302, 334, 415, 535, 542
CviKI_1	RGCY	6 cut(s)	251, 302, 334, 415, 535, 542
CviQI	GTAC	1 cut(s)	38
DdeI	CTNAG	2 cut(s)	258, 411
DpnI	GATC	1 cut(s)	384
DpnII	GATC	1 cut(s)	382
Eco130I	CCWWGG	2 cut(s)	317, 490
Eco147I	AGGCCT	1 cut(s)	535
Eco47I	GGWCC	1 cut(s)	401
EcoNI	CCTNNNNNAGG	1 cut(s)	27
EcoO109I	RGGNCCY	1 cut(s)	401
EcoT14I	CCWWGG	2 cut(s)	317, 490
ErhI	CCWWGG	2 cut(s)	317, 490
FaeI	CATG	1 cut(s)	494
FaqI	GGGAC	2 cut(s)	78, 414
FatI	CATG	1 cut(s)	490
FauNDI	CATATG	1 cut(s)	355
FblI	GTMKAC	2 cut(s)	324, 496
Fnu4HI	GCNGC	2 cut(s)	303, 540
FokI	GGATG	1 cut(s)	301
Fsp4HI	GCNGC	2 cut(s)	303, 540
FspBI	CTAG	2 cut(s)	248, 519
GluI	GCNGC	2 cut(s)	303, 540
HaeIII	GGCC	1 cut(s)	535
HapII	CCGG	1 cut(s)	395
Hin1II	CATG	1 cut(s)	494
HinfI	GANTC	1 cut(s)	175
HpaII	CCGG	1 cut(s)	395
HphI	GGTGA	1 cut(s)	92
Hpy166II	GTNNAC	3 cut(s)	16, 325, 497
Hpy188I	TCNGA	2 cut(s)	392, 447
Hpy8I	GTNNAC	3 cut(s)	16, 325, 497
HpyAV	CCTTC	2 cut(s)	57, 525
HpyCH4III	ACNGT	2 cut(s)	13, 370
HpyCH4IV	ACGT	1 cut(s)	483
HpyCH4V	TGCA	1 cut(s)	539
HpyF3I	CTNAG	2 cut(s)	258, 411
HpySE526I	ACGT	1 cut(s)	483
Hsp92II	CATG	1 cut(s)	494
KflI	GGGWCCC	1 cut(s)	401
Kzo9I	GATC	1 cut(s)	382
LmnI	GCTCC	1 cut(s)	133
LpnPI	CCDG	8 cut(s)	39, 123, 138, 245, 316, 349, 408, 439
MaeI	CTAG	2 cut(s)	248, 519
MaeII	ACGT	1 cut(s)	483
MaeIII	GTNAC	4 cut(s)	80, 187, 253, 512
MalI	GATC	1 cut(s)	384
MboI	GATC	1 cut(s)	382
MboII	GAAGA	1 cut(s)	159
MfeI	CAATTG	1 cut(s)	203
MhlI	GDGCHC	1 cut(s)	66
MluCI	AATT	4 cut(s)	57, 136, 203, 271
MlyI	GAGTC	1 cut(s)	169
MmeI	TCCRAC	1 cut(s)	415
MnlI	CCTC	3 cut(s)	23, 132, 215
MspA1I	CMGCKG	1 cut(s)	542
MspI	CCGG	1 cut(s)	395
MspR9I	CCNGG	1 cut(s)	396
MunI	CAATTG	1 cut(s)	203
NciI	CCSGG	1 cut(s)	396
NcoI	CCATGG	1 cut(s)	490
NdeI	CATATG	1 cut(s)	355
NdeII	GATC	1 cut(s)	382
NlaIII	CATG	1 cut(s)	494
NlaIV	GGNNCC	3 cut(s)	294, 402, 403
NmuCI	GTSAC	3 cut(s)	80, 187, 512
PceI	AGGCCT	1 cut(s)	535
PkrI	GCNGC	2 cut(s)	304, 541
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PpuMI	RGGWCCY	1 cut(s)	401
Psp1406I	AACGTT	1 cut(s)	483
Psp5II	RGGWCCY	1 cut(s)	401
PspN4I	GGNNCC	3 cut(s)	294, 402, 403
PspPI	GGNCC	1 cut(s)	401
PspPPI	RGGWCCY	1 cut(s)	401
PstI	CTGCAG	1 cut(s)	541
PvuII	CAGCTG	1 cut(s)	542
RsaI	GTAC	1 cut(s)	39
RsaNI	GTAC	1 cut(s)	38
SatI	GCNGC	2 cut(s)	303, 540
Sau3AI	GATC	1 cut(s)	382
Sau96I	GGNCC	1 cut(s)	401
ScaI	AGTACT	1 cut(s)	39
SchI	GAGTC	1 cut(s)	169
ScrFI	CCNGG	1 cut(s)	396
SduI	GDGCHC	1 cut(s)	66
SetI	ASST	9 cut(s)	34, 163, 226, 253, 264, 298, 417, 486, 544
SfcI	CTRYAG	1 cut(s)	537
SinI	GGWCC	1 cut(s)	401
SmlI	CTYRAG	1 cut(s)	88
SmoI	CTYRAG	1 cut(s)	88
Sse9I	AATT	4 cut(s)	57, 136, 203, 271
SseBI	AGGCCT	1 cut(s)	535
SsiI	CCGC	1 cut(s)	303
SspMI	CTAG	2 cut(s)	248, 519
StuI	AGGCCT	1 cut(s)	535
StyD4I	CCNGG	1 cut(s)	394
StyI	CCWWGG	2 cut(s)	317, 490
TaaI	ACNGT	2 cut(s)	13, 370
TaiI	ACGT	1 cut(s)	486
TaqI	TCGA	1 cut(s)	375
TasI	AATT	4 cut(s)	57, 136, 203, 271
TatI	WGTACW	1 cut(s)	37
TauI	GCSGC	1 cut(s)	305
TscAI	CASTG	3 cut(s)	16, 103, 508
TseFI	GTSAC	3 cut(s)	80, 187, 512
TseI	GCWGC	1 cut(s)	539
Tsp45I	GTSAC	3 cut(s)	80, 187, 512
TspDTI	ATGAA	4 cut(s)	130, 268, 372, 492
TspGWI	ACGGA	1 cut(s)	120
TspRI	CASTG	3 cut(s)	16, 103, 508
VpaK11BI	GGWCC	1 cut(s)	401
XagI	CCTNNNNNAGG	1 cut(s)	27
XapI	RAATTY	1 cut(s)	136
XmiI	GTMKAC	2 cut(s)	324, 496
XspI	CTAG	2 cut(s)	248, 519
ZrmI	AGTACT	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.