Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006014.1

Orthogroup ID

OG0003361

Physical Location & Seq

Genomic Coordinates Reverse (-)

42961 .. 43667

Gene Structure 707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006014.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

atgacaatcactgtaaactatccttttggaggtggagtactctctccttctactggaattgtgctcaacaatgagatgggtgacttctcaagtcccactgacatatcgccagaccatctccctcctgctccgtcaaatttcattgaaccaatcaaaagacctttatcttccatgactcctattatagtcacaaaggataatcaattggttggtgtgcttggaggtagtggtggtttgaacattatcccagctgtaactcaggtgtttatcaattatttcatattggggatggaacctttagcctcagttcaaagtccaagggtctaccacaggctaataccaaacatagtgtcatatgaaaactggactgtaatccagatcatatccgagctttcagatgaaagaaagctcttcttgcaggagcggggtcatgaattgcaggctaaagcaggggggagccatcactcagctcattgttcaaagacttggaaaccctattcagatgggcaggaaatgtggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002237 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005887 GO:0006082 GO:0006508 GO:0006518 GO:0006520 GO:0006536 GO:0006575 GO:0006749 GO:0006751 GO:0006790 GO:0006805 GO:0006807 GO:0006950 GO:0006979 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008242 GO:0009056 GO:0009064 GO:0009410 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009987 GO:0010033 GO:0010467 GO:0014070 GO:0016020 GO:0016021 GO:0016485 GO:0016740 GO:0016746 GO:0016755 GO:0016756 GO:0016787 GO:0019538 GO:0019752 GO:0031179 GO:0031224 GO:0031226 GO:0031638 GO:0032355 GO:0032496 GO:0032502 GO:0033554 GO:0033993 GO:0034097 GO:0034599 GO:0034612 GO:0034641 GO:0036374 GO:0042219 GO:0042221 GO:0043170 GO:0043171 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043648 GO:0044237 GO:0044238 GO:0044248 GO:0044273 GO:0044281 GO:0044421 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051604 GO:0051704 GO:0051707 GO:0051716 GO:0070011 GO:0070887 GO:0071466 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00430 ko00460 ko00480 ko00590 ko01100 map00430 map00460 map00480 map00590 map01100

Pfam Domains

Protein Families

G_glu_transpept

Protein Analysis

173

Amino Acids

18.98

Weight (kDa)

5.81

Isoelectric Point (pI)

46.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29210 AT4G29210 AT4G39650
fragaria_vesca	FvH4_1g06610 FvH4_1g06610
malus_domestica	MD02G1069100.v1.1 MD15G1200700.v1.1
prunus_persica	Prupe.7G216500_v2.0.a1
pyrus_communis	pycom02g05470 pycom15g17820
rosa_chinensis	RchiOBHm_Chr1g0323641 RchiOBHm_Chr2g0092341 RchiOBHm_Chr2g0139001 RchiOBHm_Chr5g0064951
rosa_laevigata	RLG00000015286 RLG00000016301 RLG00000018659
rosa_multiflora	Rmu_sc0000461.1_g000012 Rmu_sc0000461.1_g000013 Rmu_sc0003289.1_g000009 Rmu_sc0006014.1_g000003 Rmu_sc0006014.1_g000004 Rmu_sc0010108.1_g000002
rosa_roxburghii	Rroxscaffold_3G00249440
rosa_rugosa	Rorug02G0025000 Rorug02G0025100
rosa_samantha	Rh1CG057300 Rh1DG061100 Rh2AG071000 Rh2BG070600 Rh2BG414200 Rh2CG072000 Rh2DG069500
rosa_wichuraiana	Rw0G021800 Rw2G006130 Rw2G032860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	424
AccI	GTMKAC	1 cut(s)	324
AciI	CCGC	1 cut(s)	424
AcsI	RAATTY	1 cut(s)	136
AfaI	GTAC	1 cut(s)	39
AfiI	CCNNNNNNNGG	2 cut(s)	29, 53
AgsI	TTSAA	4 cut(s)	146, 238, 311, 480
AluBI	AGCT	4 cut(s)	251, 391, 409, 470
AluI	AGCT	4 cut(s)	251, 391, 409, 470
Alw21I	GWGCWC	1 cut(s)	66
ApoI	RAATTY	1 cut(s)	136
ArsI	GACNNNNNNTTYG	2 cut(s)	335, 367
AsuHPI	GGTGA	1 cut(s)	92
Bbv12I	GWGCWC	1 cut(s)	66
BccI	CCATC	5 cut(s)	70, 123, 283, 468, 497
BmcAI	AGTACT	1 cut(s)	39
BmiI	GGNNCC	2 cut(s)	294, 458
BpuEI	CTTGAG	1 cut(s)	73
BsaJI	CCNNGG	1 cut(s)	317
BsaXI	ACNNNNNCTCC	2 cut(s)	21, 51
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 53
Bse1I	ACTGG	2 cut(s)	58, 368
BseDI	CCNNGG	1 cut(s)	317
BseGI	GGATG	1 cut(s)	294
BseLI	CCNNNNNNNGG	2 cut(s)	29, 53
BseMII	CTCAG	3 cut(s)	272, 318, 480
BseNI	ACTGG	2 cut(s)	58, 368
BseYI	CCCAGC	1 cut(s)	247
BsiHKAI	GWGCWC	1 cut(s)	66
BslFI	GGGAC	1 cut(s)	78
BslI	CCNNNNNNNGG	2 cut(s)	29, 53
BsmFI	GGGAC	1 cut(s)	78
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp143I	GATC	1 cut(s)	378
BspACI	CCGC	1 cut(s)	424
BspCNI	CTCAG	3 cut(s)	271, 317, 479
BspHI	TCATGA	1 cut(s)	430
BspLI	GGNNCC	2 cut(s)	294, 458
BspQI	GCTCTTC	1 cut(s)	416
BsrBI	CCGCTC	1 cut(s)	424
BsrI	ACTGG	2 cut(s)	58, 368
BssECI	CCNNGG	1 cut(s)	317
BssMI	GATC	1 cut(s)	378
BssT1I	CCWWGG	1 cut(s)	317
Bst4CI	ACNGT	2 cut(s)	13, 370
Bst6I	CTCTTC	1 cut(s)	416
BstC8I	GCNNGC	1 cut(s)	441
BstDEI	CTNAG	3 cut(s)	258, 304, 466
BstENI	CCTNNNNNAGG	1 cut(s)	27
BstF5I	GGATG	1 cut(s)	294
BstKTI	GATC	1 cut(s)	381
BstMBI	GATC	1 cut(s)	378
BstMWI	GCNNNNNNNGC	1 cut(s)	415
BtsCI	GGATG	1 cut(s)	294
BtsIMutI	CAGTG	2 cut(s)	9, 96
Cac8I	GCNNGC	1 cut(s)	441
CciI	TCATGA	1 cut(s)	430
Csp6I	GTAC	1 cut(s)	38
CviAII	CATG	2 cut(s)	172, 431
CviJI	RGCY	8 cut(s)	251, 302, 334, 391, 409, 443, 459, 470
CviKI_1	RGCY	8 cut(s)	251, 302, 334, 391, 409, 443, 459, 470
CviQI	GTAC	1 cut(s)	38
DdeI	CTNAG	3 cut(s)	258, 304, 466
DpnI	GATC	1 cut(s)	380
DpnII	GATC	1 cut(s)	378
Eam1104I	CTCTTC	1 cut(s)	416
EarI	CTCTTC	1 cut(s)	416
Eco130I	CCWWGG	1 cut(s)	317
EcoNI	CCTNNNNNAGG	1 cut(s)	27
EcoT14I	CCWWGG	1 cut(s)	317
ErhI	CCWWGG	1 cut(s)	317
FaeI	CATG	2 cut(s)	175, 434
FaiI	YATR	9 cut(s)	104, 173, 185, 281, 347, 355, 357, 383, 432
FalI	AAGNNNNNCTT	2 cut(s)	398, 430
FaqI	GGGAC	1 cut(s)	78
FatI	CATG	2 cut(s)	171, 430
FauI	CCCGC	1 cut(s)	417
FauNDI	CATATG	1 cut(s)	355
FblI	GTMKAC	1 cut(s)	324
FokI	GGATG	1 cut(s)	301
GsaI	CCCAGC	1 cut(s)	251
Hin1II	CATG	2 cut(s)	175, 434
HinfI	GANTC	1 cut(s)	175
HphI	GGTGA	1 cut(s)	92
Hpy166II	GTNNAC	2 cut(s)	16, 325
Hpy188I	TCNGA	3 cut(s)	388, 397, 502
Hpy188III	TCNNGA	2 cut(s)	376, 431
Hpy8I	GTNNAC	2 cut(s)	16, 325
HpyAV	CCTTC	1 cut(s)	57
HpyCH4III	ACNGT	2 cut(s)	13, 370
HpyCH4V	TGCA	2 cut(s)	418, 439
HpyF10VI	GCNNNNNNNGC	1 cut(s)	415
HpyF3I	CTNAG	3 cut(s)	258, 304, 466
Hsp92II	CATG	2 cut(s)	175, 434
Kzo9I	GATC	1 cut(s)	378
LguI	GCTCTTC	1 cut(s)	416
LmnI	GCTCC	3 cut(s)	133, 421, 456
MaeIII	GTNAC	3 cut(s)	80, 187, 253
MalI	GATC	1 cut(s)	380
MbiI	CCGCTC	1 cut(s)	424
MboI	GATC	1 cut(s)	378
MboII	GAAGA	2 cut(s)	159, 403
MfeI	CAATTG	1 cut(s)	203
MhlI	GDGCHC	1 cut(s)	66
MluCI	AATT	5 cut(s)	57, 136, 203, 271, 434
MlyI	GAGTC	1 cut(s)	169
MnlI	CCTC	4 cut(s)	23, 132, 215, 313
MspA1I	CMGCKG	1 cut(s)	251
MunI	CAATTG	1 cut(s)	203
MwoI	GCNNNNNNNGC	1 cut(s)	415
NdeI	CATATG	1 cut(s)	355
NdeII	GATC	1 cut(s)	378
NlaIII	CATG	2 cut(s)	175, 434
NlaIV	GGNNCC	2 cut(s)	294, 458
NmuCI	GTSAC	2 cut(s)	80, 187
PagI	TCATGA	1 cut(s)	430
PciSI	GCTCTTC	1 cut(s)	416
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PspFI	CCCAGC	1 cut(s)	247
PspN4I	GGNNCC	2 cut(s)	294, 458
PvuII	CAGCTG	1 cut(s)	251
RsaI	GTAC	1 cut(s)	39
RsaNI	GTAC	1 cut(s)	38
SapI	GCTCTTC	1 cut(s)	416
Sau3AI	GATC	1 cut(s)	378
ScaI	AGTACT	1 cut(s)	39
SchI	GAGTC	1 cut(s)	169
SduI	GDGCHC	1 cut(s)	66
SetI	ASST	9 cut(s)	34, 163, 226, 253, 264, 298, 393, 411, 472
SmlI	CTYRAG	1 cut(s)	88
SmoI	CTYRAG	1 cut(s)	88
Sse9I	AATT	5 cut(s)	57, 136, 203, 271, 434
SsiI	CCGC	1 cut(s)	424
StyI	CCWWGG	1 cut(s)	317
TaaI	ACNGT	2 cut(s)	13, 370
TasI	AATT	5 cut(s)	57, 136, 203, 271, 434
TatI	WGTACW	1 cut(s)	37
TscAI	CASTG	2 cut(s)	16, 103
TseFI	GTSAC	2 cut(s)	80, 187
Tsp45I	GTSAC	2 cut(s)	80, 187
TspDTI	ATGAA	5 cut(s)	130, 268, 372, 414, 447
TspGWI	ACGGA	1 cut(s)	120
TspRI	CASTG	2 cut(s)	16, 103
XagI	CCTNNNNNAGG	1 cut(s)	27
XapI	RAATTY	1 cut(s)	136
XmiI	GTMKAC	1 cut(s)	324
ZrmI	AGTACT	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.