Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003361

Physical Location & Seq

Genomic Coordinates Forward (+)

70857115 .. 70858493

Gene Structure 1379 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34086

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGAGGATTTGAGGAATTATAAAGTGAATGTTACGGATGCCATGACTGCAAATGTGTTGGGATATACTATATCAGGAATGCCACCTCCTTCAGCTGGAACTTTGGGGCTTTCTATGGTGGGTGCTATCTTTTCCTATTTCCTTGTTTACCATTCTGTTCTCTATGGAAATTCAGATGCAGCAAACGGAGATCTTGGTCTGCATCGTCTGATTGAAGCATTGAAACACATGTTTGCAATCCGAATGAACTTGGGTGATCCTGCTTTTGTAGATACCCATGAATATGCATCTGATATGCTTTCTCCATCCTTTGCTAAGGAAATTCAGCAGAAGATATTTGACAACACAACTTTCCCACCAGAGTGGAGTCAGCTCAGAGATCACGGAACAAGTCATTTCTGCATAGTAGATGCAGACAGAAATGCGGTATCAATGACAACCACTGTAAACTATCCTTTTGGAGGTGGAGTACTCTCTCCTTCTACTGCAATTGTGCTCAACAATGAGATGGGTGACTTCTCAATTCCCACTGACATATCGCCAGACCATCTCCCTCCTGCTCCGTCAAATTTCATTGAACCAATCAAAAGACCTTTATCTTCCATGACTCCTATTATAGTCACAAAGGTGTTTATCAATTATTTCATATTGGGGATGGAACCTTTAGCCGCAGTTCAAAGTCCAAGGGTCTACCACAGGCTAATACCAAACATAGTGTCCTATGAAAACTGGACTGTAAGCGATGGAAATCATATTGAGCTTTCAGACGAAAGAAAGCTCTTCTTGCAGGAGCAGGGTCATGAATTGCAGCTAAAGCCGGGGGAGCCATCACTCAGCTCATTGTTCAAAGACTTGGAAACCCTATTCAGATGGGCAGGAAATGTGGTAGAAGTTCAAATGAAAACGTTTTCCATGGTATACTCACTGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002237 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005887 GO:0006082 GO:0006508 GO:0006518 GO:0006520 GO:0006536 GO:0006575 GO:0006749 GO:0006751 GO:0006790 GO:0006805 GO:0006807 GO:0006950 GO:0006979 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008242 GO:0009056 GO:0009064 GO:0009410 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009987 GO:0010033 GO:0010467 GO:0014070 GO:0016020 GO:0016021 GO:0016485 GO:0016740 GO:0016746 GO:0016755 GO:0016756 GO:0016787 GO:0019538 GO:0019752 GO:0031179 GO:0031224 GO:0031226 GO:0031638 GO:0032355 GO:0032496 GO:0032502 GO:0033554 GO:0033993 GO:0034097 GO:0034599 GO:0034612 GO:0034641 GO:0036374 GO:0042219 GO:0042221 GO:0043170 GO:0043171 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043648 GO:0044237 GO:0044238 GO:0044248 GO:0044273 GO:0044281 GO:0044421 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051604 GO:0051704 GO:0051707 GO:0051716 GO:0070011 GO:0070887 GO:0071466 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00430 ko00460 ko00480 ko00590 ko01100 map00430 map00460 map00480 map00590 map01100

Pfam Domains

Protein Families

G_glu_transpept

Protein Analysis

310

Amino Acids

34.48

Weight (kDa)

5.12

Isoelectric Point (pI)

39.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G_glu_transpept	PF01019	2 - 209	9e-57	Gamma-glutamyltranspeptidase
G_glu_transpept	PF01019	207 - 277	2.4e-06	Gamma-glutamyltranspeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29210 AT4G29210 AT4G39650
fragaria_vesca	FvH4_1g06610 FvH4_1g06610
malus_domestica	MD02G1069100.v1.1 MD15G1200700.v1.1
prunus_persica	Prupe.7G216500_v2.0.a1
pyrus_communis	pycom02g05470 pycom15g17820
rosa_chinensis	RchiOBHm_Chr1g0323641 RchiOBHm_Chr2g0092341 RchiOBHm_Chr2g0139001 RchiOBHm_Chr5g0064951
rosa_laevigata	RLG00000015286 RLG00000016301 RLG00000018659
rosa_multiflora	Rmu_sc0000461.1_g000012 Rmu_sc0000461.1_g000013 Rmu_sc0003289.1_g000009 Rmu_sc0006014.1_g000003 Rmu_sc0006014.1_g000004 Rmu_sc0010108.1_g000002
rosa_roxburghii	Rroxscaffold_3G00249440
rosa_rugosa	Rorug02G0025000 Rorug02G0025100
rosa_samantha	Rh1CG057300 Rh1DG061100 Rh2AG071000 Rh2BG070600 Rh2BG414200 Rh2CG072000 Rh2DG069500
rosa_wichuraiana	Rw0G021800 Rw2G006130 Rw2G032860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	21
AccI	GTMKAC	2 cut(s)	690, 918
AciI	CCGC	2 cut(s)	425, 669
AclI	AACGTT	1 cut(s)	905
AclWI	GGATC	1 cut(s)	251
AcsI	RAATTY	3 cut(s)	169, 321, 568
AcuI	CTGAAG	1 cut(s)	75
AfaI	GTAC	1 cut(s)	471
AfiI	CCNNNNNNNGG	2 cut(s)	95, 461
AflIII	ACRYGT	1 cut(s)	228
AgsI	TTSAA	6 cut(s)	215, 223, 578, 677, 847, 896
AleI	CACNNNNGTG	2 cut(s)	361, 626
AluBI	AGCT	6 cut(s)	95, 373, 760, 778, 811, 837
AluI	AGCT	6 cut(s)	95, 373, 760, 778, 811, 837
Alw21I	GWGCWC	1 cut(s)	498
AlwI	GGATC	1 cut(s)	251
ApeKI	GCWGC	2 cut(s)	179, 808
ApoI	RAATTY	3 cut(s)	169, 321, 568
ArsI	GACNNNNNNTTYG	2 cut(s)	701, 733
AsuC2I	CCSGG	1 cut(s)	819
AsuHPI	GGTGA	2 cut(s)	266, 524
Bbv12I	GWGCWC	1 cut(s)	498
BbvI	GCAGC	2 cut(s)	191, 820
BccI	CCATC	7 cut(s)	313, 502, 555, 649, 737, 835, 864
BcnI	CCSGG	1 cut(s)	819
BglII	AGATCT	1 cut(s)	190
BisI	GCNGC	3 cut(s)	180, 669, 809
BlsI	GCNGC	3 cut(s)	181, 670, 810
BmcAI	AGTACT	1 cut(s)	471
Bme1390I	CCNGG	1 cut(s)	819
BmiI	GGNNCC	2 cut(s)	660, 825
BmrFI	CCNGG	1 cut(s)	819
BmsI	GCATC	5 cut(s)	28, 166, 211, 296, 400
Bpu10I	CCTNAGC	1 cut(s)	315
BpuMI	CCSGG	1 cut(s)	819
BsaBI	GATNNNNATC	1 cut(s)	747
BsaJI	CCNNGG	3 cut(s)	683, 818, 912
BsaXI	ACNNNNNCTCC	2 cut(s)	453, 483
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 461
Bse1I	ACTGG	1 cut(s)	734
Bse8I	GATNNNNATC	1 cut(s)	747
BseDI	CCNNGG	3 cut(s)	683, 818, 912
BseGI	GGATG	3 cut(s)	43, 305, 660
BseJI	GATNNNNATC	1 cut(s)	747
BseLI	CCNNNNNNNGG	2 cut(s)	95, 461
BseMII	CTCAG	2 cut(s)	388, 847
BseNI	ACTGG	1 cut(s)	734
BseXI	GCAGC	2 cut(s)	191, 820
BsiHKAI	GWGCWC	1 cut(s)	498
BsiSI	CCGG	1 cut(s)	818
BslI	CCNNNNNNNGG	2 cut(s)	95, 461
BsmI	GAATGC	1 cut(s)	84
Bsp1286I	GDGCHC	1 cut(s)	498
Bsp143I	GATC	3 cut(s)	190, 256, 379
Bsp19I	CCATGG	1 cut(s)	912
BspACI	CCGC	2 cut(s)	425, 669
BspCNI	CTCAG	2 cut(s)	387, 846
BspHI	TCATGA	1 cut(s)	799
BspLI	GGNNCC	2 cut(s)	660, 825
BspPI	GGATC	1 cut(s)	251
BspQI	GCTCTTC	1 cut(s)	785
BsrI	ACTGG	1 cut(s)	734
BssECI	CCNNGG	3 cut(s)	683, 818, 912
BssMI	GATC	3 cut(s)	190, 256, 379
BssNAI	GTATAC	1 cut(s)	919
BssT1I	CCWWGG	2 cut(s)	683, 912
Bst1107I	GTATAC	1 cut(s)	919
Bst4CI	ACNGT	2 cut(s)	445, 736
Bst6I	CTCTTC	1 cut(s)	785
BstDEI	CTNAG	3 cut(s)	315, 374, 833
BstDSI	CCRYGG	1 cut(s)	912
BstENI	CCTNNNNNAGG	1 cut(s)	459
BstF5I	GGATG	3 cut(s)	43, 305, 660
BstKTI	GATC	3 cut(s)	193, 259, 382
BstMBI	GATC	3 cut(s)	190, 256, 379
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 784, 814, 823
BstNSI	RCATGY	1 cut(s)	232
BstSCI	CCNGG	1 cut(s)	817
BstV1I	GCAGC	2 cut(s)	191, 820
BstX2I	RGATCY	1 cut(s)	190
BstXI	CCANNNNNNTGG	1 cut(s)	363
BstYI	RGATCY	1 cut(s)	190
BstZ17I	GTATAC	1 cut(s)	919
BtgI	CCRYGG	1 cut(s)	912
BtgZI	GCGATG	1 cut(s)	756
BtsCI	GGATG	3 cut(s)	43, 305, 660
BtsI	GCAGTG	1 cut(s)	923
BtsIMutI	CAGTG	3 cut(s)	441, 528, 923
CciI	TCATGA	1 cut(s)	799
Csp6I	GTAC	1 cut(s)	470
CviAII	CATG	6 cut(s)	43, 229, 278, 604, 800, 913
CviQI	GTAC	1 cut(s)	470
DdeI	CTNAG	3 cut(s)	315, 374, 833
DpnI	GATC	3 cut(s)	192, 258, 381
DpnII	GATC	3 cut(s)	190, 256, 379
Eam1104I	CTCTTC	1 cut(s)	785
EarI	CTCTTC	1 cut(s)	785
Eco130I	CCWWGG	2 cut(s)	683, 912
Eco57I	CTGAAG	1 cut(s)	75
EcoNI	CCTNNNNNAGG	1 cut(s)	459
EcoT14I	CCWWGG	2 cut(s)	683, 912
EcoT22I	ATGCAT	1 cut(s)	289
ErhI	CCWWGG	2 cut(s)	683, 912
FaeI	CATG	6 cut(s)	46, 232, 281, 607, 803, 916
FalI	AAGNNNNNCTT	2 cut(s)	767, 799
FatI	CATG	6 cut(s)	42, 228, 277, 603, 799, 912
FblI	GTMKAC	2 cut(s)	690, 918
Fnu4HI	GCNGC	3 cut(s)	180, 669, 809
FokI	GGATG	3 cut(s)	50, 292, 667
Fsp4HI	GCNGC	3 cut(s)	180, 669, 809
GluI	GCNGC	3 cut(s)	180, 669, 809
HapII	CCGG	1 cut(s)	818
Hin1II	CATG	6 cut(s)	46, 232, 281, 607, 803, 916
HinfI	GANTC	2 cut(s)	367, 607
HpaII	CCGG	1 cut(s)	818
HphI	GGTGA	2 cut(s)	266, 524
Hpy166II	GTNNAC	4 cut(s)	148, 448, 691, 919
Hpy188I	TCNGA	7 cut(s)	175, 210, 242, 292, 377, 766, 869
Hpy188III	TCNNGA	2 cut(s)	75, 800
Hpy8I	GTNNAC	4 cut(s)	148, 448, 691, 919
HpyAV	CCTTC	2 cut(s)	99, 489
HpyCH4III	ACNGT	2 cut(s)	445, 736
HpyCH4IV	ACGT	1 cut(s)	905
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 784, 814, 823
HpyF3I	CTNAG	3 cut(s)	315, 374, 833
HpySE526I	ACGT	1 cut(s)	905
Hsp92II	CATG	6 cut(s)	46, 232, 281, 607, 803, 916
Kzo9I	GATC	3 cut(s)	190, 256, 379
LguI	GCTCTTC	1 cut(s)	785
LmnI	GCTCC	3 cut(s)	565, 790, 823
Lsp1109I	GCAGC	2 cut(s)	191, 820
LweI	GCATC	5 cut(s)	28, 166, 211, 296, 400
MaeII	ACGT	1 cut(s)	905
MaeIII	GTNAC	3 cut(s)	31, 512, 619
MalI	GATC	3 cut(s)	192, 258, 381
MboI	GATC	3 cut(s)	190, 256, 379
MboII	GAAGA	3 cut(s)	343, 591, 772
MfeI	CAATTG	1 cut(s)	489
MflI	RGATCY	1 cut(s)	190
MhlI	GDGCHC	1 cut(s)	498
MluCI	AATT	8 cut(s)	16, 169, 321, 489, 522, 568, 637, 803
MlyI	GAGTC	2 cut(s)	376, 601
MnlI	CCTC	4 cut(s)	6, 96, 455, 564
Mph1103I	ATGCAT	1 cut(s)	289
MslI	CAYNNNNRTG	3 cut(s)	282, 361, 626
MspA1I	CMGCKG	1 cut(s)	95
MspI	CCGG	1 cut(s)	818
MspR9I	CCNGG	1 cut(s)	819
MunI	CAATTG	1 cut(s)	489
Mva1269I	GAATGC	1 cut(s)	84
MwoI	GCNNNNNNNGC	4 cut(s)	47, 784, 814, 823
NciI	CCSGG	1 cut(s)	819
NcoI	CCATGG	1 cut(s)	912
NdeII	GATC	3 cut(s)	190, 256, 379
NlaIII	CATG	6 cut(s)	46, 232, 281, 607, 803, 916
NlaIV	GGNNCC	2 cut(s)	660, 825
NmuCI	GTSAC	2 cut(s)	512, 619
NsiI	ATGCAT	1 cut(s)	289
NspI	RCATGY	1 cut(s)	232
OliI	CACNNNNGTG	2 cut(s)	361, 626
PagI	TCATGA	1 cut(s)	799
PciI	ACATGT	1 cut(s)	228
PciSI	GCTCTTC	1 cut(s)	785
PctI	GAATGC	1 cut(s)	84
PkrI	GCNGC	3 cut(s)	181, 670, 810
PleI	GAGTC	2 cut(s)	375, 601
PpsI	GAGTC	2 cut(s)	375, 601
PscI	ACATGT	1 cut(s)	228
PsiI	TTATAA	1 cut(s)	21
Psp1406I	AACGTT	1 cut(s)	905
PspN4I	GGNNCC	2 cut(s)	660, 825
PsuI	RGATCY	1 cut(s)	190
PvuII	CAGCTG	1 cut(s)	95
RsaI	GTAC	1 cut(s)	471
RsaNI	GTAC	1 cut(s)	470
RseI	CAYNNNNRTG	3 cut(s)	282, 361, 626
SapI	GCTCTTC	1 cut(s)	785
SatI	GCNGC	3 cut(s)	180, 669, 809
Sau3AI	GATC	3 cut(s)	190, 256, 379
ScaI	AGTACT	1 cut(s)	471
SchI	GAGTC	2 cut(s)	376, 601
ScrFI	CCNGG	1 cut(s)	819
SduI	GDGCHC	1 cut(s)	498
SfaNI	GCATC	5 cut(s)	28, 166, 211, 296, 400
SmiMI	CAYNNNNRTG	3 cut(s)	282, 361, 626
Sse9I	AATT	8 cut(s)	16, 169, 321, 489, 522, 568, 637, 803
SsiI	CCGC	2 cut(s)	425, 669
StyD4I	CCNGG	1 cut(s)	817
StyI	CCWWGG	2 cut(s)	683, 912
TaaI	ACNGT	2 cut(s)	445, 736
TaiI	ACGT	1 cut(s)	908
TasI	AATT	8 cut(s)	16, 169, 321, 489, 522, 568, 637, 803
TatI	WGTACW	1 cut(s)	469
TauI	GCSGC	1 cut(s)	671
TscAI	CASTG	3 cut(s)	448, 535, 930
TseFI	GTSAC	2 cut(s)	512, 619
TseI	GCWGC	2 cut(s)	179, 808
Tsp45I	GTSAC	2 cut(s)	512, 619
TspDTI	ATGAA	7 cut(s)	260, 294, 562, 634, 738, 816, 914
TspGWI	ACGGA	4 cut(s)	50, 201, 399, 552
TspRI	CASTG	3 cut(s)	448, 535, 930
XagI	CCTNNNNNAGG	1 cut(s)	459
XapI	RAATTY	3 cut(s)	169, 321, 568
XceI	RCATGY	1 cut(s)	232
XmiI	GTMKAC	2 cut(s)	690, 918
ZrmI	AGTACT	1 cut(s)	471
Zsp2I	ATGCAT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.