Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003361

Physical Location & Seq

Genomic Coordinates Reverse (-)

11066434 .. 11067832

Gene Structure 1399 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55351

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGAGGATTTGAGGAATTACAAAGTGAATGTTACGGATGCCATGACTGCAAATATGTTGGGATATACTATATCAGGAATGCCACCTCCTTCAGTTGGAACTTTGTGGTTTTCTATGATTCTGAACATCTTCAACAGCTATGGAAATTTAAATGCAGCAAACGGAGATCTTGGTCTGCATCGTCTGATTGAAGCATTGAAACACATGCGGAGTCAGCTCAGAGATCACGGAACAAGTCATTTCTGCATAGTAGATGCAGACAGAAATGTTGTATCAATGACAACCACTATAAACTATCCTTTTGGAGGTGGAGTACTCTCTCCTTCTACTGGAATTGTGCTCAACAATGAGATGGGTGACTTCTCAATTCTCACTGACATATCGCCAGACCATCTCCCTCCTACTCCGTCAAATTTCATTGAACCAATCAAAAGACCTTTATCTTCCATGACTCCTATTATAGATAATCAATTGGTTGGTGTGCTTGGAGGTAGTGGTGGTTTGAACATTATCCCAGCTGTAACTCAGGTGTTTATCAATTATTTCATATTGGGGATGGAACCTTTAGCCGCAGTTCAAAGTCCAAGGGTCTACCACAGGGAGCGGGGTCATGAATTGCAGGCTAAAGCCGAGGGAGCCATCACTCAGCTCATTGTTCAAAGACTTGGAAACCCTATTCAAATGGGCAGGAAATGTGGTAGAAGTTCAAATGAAAATGTTTTCCATGGTATACTCACTGCTGTAAGTGACCCTAGAAAAGATGGAAGGCCTGCAGCTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002237 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005887 GO:0006082 GO:0006508 GO:0006518 GO:0006520 GO:0006536 GO:0006575 GO:0006749 GO:0006751 GO:0006790 GO:0006805 GO:0006807 GO:0006950 GO:0006979 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008242 GO:0009056 GO:0009064 GO:0009410 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009987 GO:0010033 GO:0010467 GO:0014070 GO:0016020 GO:0016021 GO:0016485 GO:0016740 GO:0016746 GO:0016755 GO:0016756 GO:0016787 GO:0019538 GO:0019752 GO:0031179 GO:0031224 GO:0031226 GO:0031638 GO:0032355 GO:0032496 GO:0032502 GO:0033554 GO:0033993 GO:0034097 GO:0034599 GO:0034612 GO:0034641 GO:0036374 GO:0042219 GO:0042221 GO:0043170 GO:0043171 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043648 GO:0044237 GO:0044238 GO:0044248 GO:0044273 GO:0044281 GO:0044421 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051604 GO:0051704 GO:0051707 GO:0051716 GO:0070011 GO:0070887 GO:0071466 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00430 ko00460 ko00480 ko00590 ko01100 map00430 map00460 map00480 map00590 map01100

Pfam Domains

Protein Families

G_glu_transpept

Protein Analysis

260

Amino Acids

28.23

Weight (kDa)

6.7

Isoelectric Point (pI)

39.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G_glu_transpept	PF01019	2 - 71	8.2e-10	Gamma-glutamyltranspeptidase
G_glu_transpept	PF01019	71 - 255	4.3e-48	Gamma-glutamyltranspeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29210 AT4G29210 AT4G39650
fragaria_vesca	FvH4_1g06610 FvH4_1g06610
malus_domestica	MD02G1069100.v1.1 MD15G1200700.v1.1
prunus_persica	Prupe.7G216500_v2.0.a1
pyrus_communis	pycom02g05470 pycom15g17820
rosa_chinensis	RchiOBHm_Chr1g0323641 RchiOBHm_Chr2g0092341 RchiOBHm_Chr2g0139001 RchiOBHm_Chr5g0064951
rosa_laevigata	RLG00000015286 RLG00000016301 RLG00000018659
rosa_multiflora	Rmu_sc0000461.1_g000012 Rmu_sc0000461.1_g000013 Rmu_sc0003289.1_g000009 Rmu_sc0006014.1_g000003 Rmu_sc0006014.1_g000004 Rmu_sc0010108.1_g000002
rosa_roxburghii	Rroxscaffold_3G00249440
rosa_rugosa	Rorug02G0025000 Rorug02G0025100
rosa_samantha	Rh1CG057300 Rh1DG061100 Rh2AG071000 Rh2BG070600 Rh2BG414200 Rh2CG072000 Rh2DG069500
rosa_wichuraiana	Rw0G021800 Rw2G006130 Rw2G032860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	604
AccI	GTMKAC	2 cut(s)	591, 730
AciI	CCGC	3 cut(s)	208, 570, 604
AcsI	RAATTY	2 cut(s)	145, 412
AcuI	CTGAAG	1 cut(s)	75
AfaI	GTAC	1 cut(s)	315
AfiI	CCNNNNNNNGG	3 cut(s)	95, 305, 329
AgsI	TTSAA	9 cut(s)	133, 191, 199, 422, 505, 578, 659, 680, 708
AluBI	AGCT	5 cut(s)	138, 217, 518, 649, 776
AluI	AGCT	5 cut(s)	138, 217, 518, 649, 776
Alw21I	GWGCWC	1 cut(s)	342
AoxI	GGCC	1 cut(s)	767
ApeKI	GCWGC	2 cut(s)	155, 773
ApoI	RAATTY	2 cut(s)	145, 412
Asp700I	GAANNNNTTC	1 cut(s)	128
AsuHPI	GGTGA	1 cut(s)	368
Bbv12I	GWGCWC	1 cut(s)	342
BbvI	GCAGC	1 cut(s)	167
BccI	CCATC	5 cut(s)	346, 399, 550, 647, 755
BfaI	CTAG	1 cut(s)	753
BfmI	CTRYAG	1 cut(s)	771
BglII	AGATCT	1 cut(s)	166
BisI	GCNGC	3 cut(s)	156, 570, 774
BlsI	GCNGC	3 cut(s)	157, 571, 775
BmcAI	AGTACT	1 cut(s)	315
BmiI	GGNNCC	2 cut(s)	561, 637
BmsI	GCATC	3 cut(s)	28, 187, 244
BsaJI	CCNNGG	3 cut(s)	584, 630, 724
BsaXI	ACNNNNNCTCC	2 cut(s)	297, 327
Bsc4I	CCNNNNNNNGG	3 cut(s)	95, 305, 329
Bse1I	ACTGG	1 cut(s)	334
BseDI	CCNNGG	3 cut(s)	584, 630, 724
BseGI	GGATG	2 cut(s)	43, 561
BseLI	CCNNNNNNNGG	3 cut(s)	95, 305, 329
BseMII	CTCAG	3 cut(s)	232, 539, 659
BseNI	ACTGG	1 cut(s)	334
BseXI	GCAGC	1 cut(s)	167
BseYI	CCCAGC	1 cut(s)	514
BshFI	GGCC	1 cut(s)	769
BsiHKAI	GWGCWC	1 cut(s)	342
BslI	CCNNNNNNNGG	3 cut(s)	95, 305, 329
BsmI	GAATGC	1 cut(s)	84
BsnI	GGCC	1 cut(s)	769
Bsp1286I	GDGCHC	1 cut(s)	342
Bsp143I	GATC	2 cut(s)	166, 223
Bsp19I	CCATGG	1 cut(s)	724
BspACI	CCGC	3 cut(s)	208, 570, 604
BspANI	GGCC	1 cut(s)	769
BspCNI	CTCAG	3 cut(s)	231, 538, 658
BspHI	TCATGA	1 cut(s)	610
BspLI	GGNNCC	2 cut(s)	561, 637
BspMAI	CTGCAG	1 cut(s)	775
BsrBI	CCGCTC	1 cut(s)	604
BsrI	ACTGG	1 cut(s)	334
BssECI	CCNNGG	3 cut(s)	584, 630, 724
BssMI	GATC	2 cut(s)	166, 223
BssNAI	GTATAC	1 cut(s)	731
BssT1I	CCWWGG	2 cut(s)	584, 724
Bst1107I	GTATAC	1 cut(s)	731
BstC8I	GCNNGC	2 cut(s)	621, 771
BstDEI	CTNAG	3 cut(s)	218, 525, 645
BstDSI	CCRYGG	1 cut(s)	724
BstENI	CCTNNNNNAGG	1 cut(s)	303
BstF5I	GGATG	2 cut(s)	43, 561
BstKTI	GATC	2 cut(s)	169, 226
BstMBI	GATC	2 cut(s)	166, 223
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 214, 635
BstNSI	RCATGY	1 cut(s)	208
BstSFI	CTRYAG	1 cut(s)	771
BstV1I	GCAGC	1 cut(s)	167
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
BstZ17I	GTATAC	1 cut(s)	731
BsuRI	GGCC	1 cut(s)	769
BtgI	CCRYGG	1 cut(s)	724
BtsCI	GGATG	2 cut(s)	43, 561
BtsI	GCAGTG	1 cut(s)	735
BtsIMutI	CAGTG	2 cut(s)	372, 735
Cac8I	GCNNGC	2 cut(s)	621, 771
CciI	TCATGA	1 cut(s)	610
Csp6I	GTAC	1 cut(s)	314
CviAII	CATG	5 cut(s)	43, 205, 448, 611, 725
CviQI	GTAC	1 cut(s)	314
DdeI	CTNAG	3 cut(s)	218, 525, 645
DpnI	GATC	2 cut(s)	168, 225
DpnII	GATC	2 cut(s)	166, 223
DraI	TTTAAA	1 cut(s)	150
Eco130I	CCWWGG	2 cut(s)	584, 724
Eco147I	AGGCCT	1 cut(s)	769
Eco57I	CTGAAG	1 cut(s)	75
EcoNI	CCTNNNNNAGG	1 cut(s)	303
EcoT14I	CCWWGG	2 cut(s)	584, 724
ErhI	CCWWGG	2 cut(s)	584, 724
FaeI	CATG	5 cut(s)	46, 208, 451, 614, 728
FatI	CATG	5 cut(s)	42, 204, 447, 610, 724
FauI	CCCGC	1 cut(s)	597
FblI	GTMKAC	2 cut(s)	591, 730
Fnu4HI	GCNGC	3 cut(s)	156, 570, 774
FokI	GGATG	2 cut(s)	50, 568
Fsp4HI	GCNGC	3 cut(s)	156, 570, 774
FspBI	CTAG	1 cut(s)	753
GluI	GCNGC	3 cut(s)	156, 570, 774
GsaI	CCCAGC	1 cut(s)	518
HaeIII	GGCC	1 cut(s)	769
Hin1II	CATG	5 cut(s)	46, 208, 451, 614, 728
HinfI	GANTC	3 cut(s)	118, 211, 451
HphI	GGTGA	1 cut(s)	368
Hpy166II	GTNNAC	2 cut(s)	592, 731
Hpy188I	TCNGA	3 cut(s)	123, 186, 221
Hpy188III	TCNNGA	2 cut(s)	75, 611
Hpy8I	GTNNAC	2 cut(s)	592, 731
HpyAV	CCTTC	3 cut(s)	99, 333, 759
HpyCH4V	TGCA	7 cut(s)	50, 155, 178, 246, 257, 619, 773
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 214, 635
HpyF3I	CTNAG	3 cut(s)	218, 525, 645
Hsp92II	CATG	5 cut(s)	46, 208, 451, 614, 728
Kzo9I	GATC	2 cut(s)	166, 223
LmnI	GCTCC	2 cut(s)	601, 635
LpnPI	CCDG	8 cut(s)	60, 315, 399, 512, 528, 583, 605, 673
Lsp1109I	GCAGC	1 cut(s)	167
LweI	GCATC	3 cut(s)	28, 187, 244
MaeI	CTAG	1 cut(s)	753
MaeIII	GTNAC	4 cut(s)	31, 356, 520, 746
MalI	GATC	2 cut(s)	168, 225
MbiI	CCGCTC	1 cut(s)	604
MboI	GATC	2 cut(s)	166, 223
MboII	GAAGA	2 cut(s)	121, 435
MfeI	CAATTG	1 cut(s)	470
MflI	RGATCY	1 cut(s)	166
MhlI	GDGCHC	1 cut(s)	342
MluCI	AATT	8 cut(s)	16, 145, 333, 366, 412, 470, 538, 614
MlyI	GAGTC	2 cut(s)	220, 445
MmeI	TCCRAC	1 cut(s)	76
MnlI	CCTC	6 cut(s)	6, 96, 299, 408, 482, 625
MroXI	GAANNNNTTC	1 cut(s)	128
MseI	TTAA	1 cut(s)	149
MspA1I	CMGCKG	2 cut(s)	518, 776
MunI	CAATTG	1 cut(s)	470
Mva1269I	GAATGC	1 cut(s)	84
MwoI	GCNNNNNNNGC	3 cut(s)	47, 214, 635
NcoI	CCATGG	1 cut(s)	724
NdeII	GATC	2 cut(s)	166, 223
NlaIII	CATG	5 cut(s)	46, 208, 451, 614, 728
NlaIV	GGNNCC	2 cut(s)	561, 637
NmeAIII	GCCGAG	1 cut(s)	655
NmuCI	GTSAC	2 cut(s)	356, 746
NspI	RCATGY	1 cut(s)	208
PagI	TCATGA	1 cut(s)	610
PceI	AGGCCT	1 cut(s)	769
PctI	GAATGC	1 cut(s)	84
PdmI	GAANNNNTTC	1 cut(s)	128
PfeI	GAWTC	1 cut(s)	118
PkrI	GCNGC	3 cut(s)	157, 571, 775
PleI	GAGTC	2 cut(s)	219, 445
PpsI	GAGTC	2 cut(s)	219, 445
PspFI	CCCAGC	1 cut(s)	514
PspN4I	GGNNCC	2 cut(s)	561, 637
PstI	CTGCAG	1 cut(s)	775
PsuI	RGATCY	1 cut(s)	166
PvuII	CAGCTG	2 cut(s)	518, 776
RsaI	GTAC	1 cut(s)	315
RsaNI	GTAC	1 cut(s)	314
SaqAI	TTAA	1 cut(s)	149
SatI	GCNGC	3 cut(s)	156, 570, 774
Sau3AI	GATC	2 cut(s)	166, 223
ScaI	AGTACT	1 cut(s)	315
SchI	GAGTC	2 cut(s)	220, 445
SduI	GDGCHC	1 cut(s)	342
SfaNI	GCATC	3 cut(s)	28, 187, 244
SfcI	CTRYAG	1 cut(s)	771
SmiI	ATTTAAAT	1 cut(s)	150
Sse9I	AATT	8 cut(s)	16, 145, 333, 366, 412, 470, 538, 614
SseBI	AGGCCT	1 cut(s)	769
SsiI	CCGC	3 cut(s)	208, 570, 604
SspMI	CTAG	1 cut(s)	753
StuI	AGGCCT	1 cut(s)	769
StyI	CCWWGG	2 cut(s)	584, 724
SwaI	ATTTAAAT	1 cut(s)	150
TasI	AATT	8 cut(s)	16, 145, 333, 366, 412, 470, 538, 614
TatI	WGTACW	1 cut(s)	313
TauI	GCSGC	1 cut(s)	572
TfiI	GAWTC	1 cut(s)	118
Tru1I	TTAA	1 cut(s)	149
Tru9I	TTAA	1 cut(s)	149
TscAI	CASTG	2 cut(s)	379, 742
TseFI	GTSAC	2 cut(s)	356, 746
TseI	GCWGC	2 cut(s)	155, 773
Tsp45I	GTSAC	2 cut(s)	356, 746
TspDTI	ATGAA	4 cut(s)	406, 535, 627, 726
TspGWI	ACGGA	4 cut(s)	50, 177, 243, 396
TspRI	CASTG	2 cut(s)	379, 742
XagI	CCTNNNNNAGG	1 cut(s)	303
XapI	RAATTY	2 cut(s)	145, 412
XceI	RCATGY	1 cut(s)	208
XmiI	GTMKAC	2 cut(s)	591, 730
XmnI	GAANNNNTTC	1 cut(s)	128
XspI	CTAG	1 cut(s)	753
ZrmI	AGTACT	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.