Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003361

Physical Location & Seq

Genomic Coordinates Forward (+)

43112432 .. 43114446

Gene Structure 2015 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00249440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGATTCCTCGTGTTTGTCTATGTGTGATGTGAAGTCTCTTTGCGGACTCGAGATTGATTGTTTATTGAGTGTTGTAGGACCCAAGTGGGGCGTAGTGATTAGAGGATTGTGTTTCCTCGTGATTCCCGATAATCAATTGGTTGGTGTGCTTGGAGGTAGCGGTGGTTTGAACATTATCCCAGCTGTAACTCAGGTGTTTATCAATTATTTCATATTGGGGATGGAACCTTTAGCCGCAGTTCAAAGTTCAAGGGTCTACCACAGGACTGTAATCGATGGAGATCATATCAAGCTTTCAGACGAAAGAAAGCACTTCTTGCAGGAGCGAGGTCATGAATTGCAGGCTAAAGCCGAGGGAGCCATCACTCAGCTCATTGTTCAAAGACTTGGAAACCCTATTCAGATGGGCAGGAAACGTGGTAGAAGTTCAAATGAAAACGTTTTCCATGGTATACTCACTGCTGTAAGTGACCCTATAAAAGATGGAAGGCCTGCAGCTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002237 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005887 GO:0006082 GO:0006508 GO:0006518 GO:0006520 GO:0006536 GO:0006575 GO:0006749 GO:0006751 GO:0006790 GO:0006805 GO:0006807 GO:0006950 GO:0006979 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008242 GO:0009056 GO:0009064 GO:0009410 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009987 GO:0010033 GO:0010467 GO:0014070 GO:0016020 GO:0016021 GO:0016485 GO:0016740 GO:0016746 GO:0016755 GO:0016756 GO:0016787 GO:0019538 GO:0019752 GO:0031179 GO:0031224 GO:0031226 GO:0031638 GO:0032355 GO:0032496 GO:0032502 GO:0033554 GO:0033993 GO:0034097 GO:0034599 GO:0034612 GO:0034641 GO:0036374 GO:0042219 GO:0042221 GO:0043170 GO:0043171 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043648 GO:0044237 GO:0044238 GO:0044248 GO:0044273 GO:0044281 GO:0044421 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051604 GO:0051704 GO:0051707 GO:0051716 GO:0070011 GO:0070887 GO:0071466 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00430 ko00460 ko00480 ko00590 ko01100 map00430 map00460 map00480 map00590 map01100

Pfam Domains

Protein Families

G_glu_transpept

Protein Analysis

168

Amino Acids

18.2

Weight (kDa)

7.68

Isoelectric Point (pI)

36.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G_glu_transpept	PF01019	40 - 130	5.2e-13	Gamma-glutamyltranspeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29210 AT4G29210 AT4G39650
fragaria_vesca	FvH4_1g06610 FvH4_1g06610
malus_domestica	MD02G1069100.v1.1 MD15G1200700.v1.1
prunus_persica	Prupe.7G216500_v2.0.a1
pyrus_communis	pycom02g05470 pycom15g17820
rosa_chinensis	RchiOBHm_Chr1g0323641 RchiOBHm_Chr2g0092341 RchiOBHm_Chr2g0139001 RchiOBHm_Chr5g0064951
rosa_laevigata	RLG00000015286 RLG00000016301 RLG00000018659
rosa_multiflora	Rmu_sc0000461.1_g000012 Rmu_sc0000461.1_g000013 Rmu_sc0003289.1_g000009 Rmu_sc0006014.1_g000003 Rmu_sc0006014.1_g000004 Rmu_sc0010108.1_g000002
rosa_roxburghii	Rroxscaffold_3G00249440
rosa_rugosa	Rorug02G0025000 Rorug02G0025100
rosa_samantha	Rh1CG057300 Rh1DG061100 Rh2AG071000 Rh2BG070600 Rh2BG414200 Rh2CG072000 Rh2DG069500
rosa_wichuraiana	Rw0G021800 Rw2G006130 Rw2G032860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	258, 454
AciI	CCGC	3 cut(s)	45, 162, 237
AclI	AACGTT	1 cut(s)	441
AfiI	CCNNNNNNNGG	1 cut(s)	89
AgsI	TTSAA	5 cut(s)	172, 245, 252, 383, 432
AluBI	AGCT	4 cut(s)	185, 295, 373, 500
AluI	AGCT	4 cut(s)	185, 295, 373, 500
Alw26I	GTCTC	1 cut(s)	42
Ama87I	CYCGRG	1 cut(s)	50
AoxI	GGCC	1 cut(s)	491
ApeKI	GCWGC	1 cut(s)	497
AspS9I	GGNCC	1 cut(s)	80
AvaI	CYCGRG	1 cut(s)	50
AvaII	GGWCC	1 cut(s)	80
BauI	CACGAG	2 cut(s)	10, 119
BccI	CCATC	5 cut(s)	217, 272, 371, 400, 479
BcoDI	GTCTC	1 cut(s)	42
BfmI	CTRYAG	1 cut(s)	495
BisI	GCNGC	2 cut(s)	237, 498
BlsI	GCNGC	2 cut(s)	238, 499
Bme18I	GGWCC	1 cut(s)	80
BmeT110I	CYCGRG	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	80
BmiI	GGNNCC	3 cut(s)	82, 228, 361
Bsa29I	ATCGAT	1 cut(s)	276
BsaBI	GATNNNNATC	1 cut(s)	282
BsaJI	CCNNGG	2 cut(s)	354, 448
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse8I	GATNNNNATC	1 cut(s)	282
BseCI	ATCGAT	1 cut(s)	276
BseDI	CCNNGG	2 cut(s)	354, 448
BseGI	GGATG	1 cut(s)	228
BseJI	GATNNNNATC	1 cut(s)	282
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMII	CTCAG	2 cut(s)	206, 383
BseYI	CCCAGC	1 cut(s)	181
BshFI	GGCC	1 cut(s)	493
BshVI	ATCGAT	1 cut(s)	276
BsiHKCI	CYCGRG	1 cut(s)	50
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmAI	GTCTC	1 cut(s)	42
BsnI	GGCC	1 cut(s)	493
BsoBI	CYCGRG	1 cut(s)	50
Bsp143I	GATC	1 cut(s)	283
Bsp19I	CCATGG	1 cut(s)	448
BspACI	CCGC	3 cut(s)	45, 162, 237
BspANI	GGCC	1 cut(s)	493
BspCNI	CTCAG	2 cut(s)	205, 382
BspDI	ATCGAT	1 cut(s)	276
BspHI	TCATGA	1 cut(s)	334
BspLI	GGNNCC	3 cut(s)	82, 228, 361
BspMAI	CTGCAG	1 cut(s)	499
BssECI	CCNNGG	2 cut(s)	354, 448
BssMI	GATC	1 cut(s)	283
BssNAI	GTATAC	1 cut(s)	455
BssSI	CACGAG	2 cut(s)	10, 119
BssT1I	CCWWGG	1 cut(s)	448
Bst1107I	GTATAC	1 cut(s)	455
Bst2BI	CACGAG	2 cut(s)	10, 119
Bst4CI	ACNGT	1 cut(s)	271
BstAPI	GCANNNNNTGC	1 cut(s)	319
BstC8I	GCNNGC	2 cut(s)	345, 495
BstDEI	CTNAG	2 cut(s)	192, 369
BstDSI	CCRYGG	1 cut(s)	448
BstF5I	GGATG	1 cut(s)	228
BstKTI	GATC	1 cut(s)	286
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	1 cut(s)	283
BstMWI	GCNNNNNNNGC	2 cut(s)	319, 359
BstSFI	CTRYAG	1 cut(s)	495
BstZ17I	GTATAC	1 cut(s)	455
Bsu15I	ATCGAT	1 cut(s)	276
BsuRI	GGCC	1 cut(s)	493
BsuTUI	ATCGAT	1 cut(s)	276
BtgI	CCRYGG	1 cut(s)	448
BtsCI	GGATG	1 cut(s)	228
BtsI	GCAGTG	1 cut(s)	459
BtsIMutI	CAGTG	1 cut(s)	459
Cac8I	GCNNGC	2 cut(s)	345, 495
CciI	TCATGA	1 cut(s)	334
Cfr13I	GGNCC	1 cut(s)	80
ClaI	ATCGAT	1 cut(s)	276
CviAII	CATG	2 cut(s)	335, 449
CviJI	RGCY	9 cut(s)	185, 236, 295, 347, 353, 362, 373, 493, 500
CviKI_1	RGCY	9 cut(s)	185, 236, 295, 347, 353, 362, 373, 493, 500
DdeI	CTNAG	2 cut(s)	192, 369
DpnI	GATC	1 cut(s)	285
DpnII	GATC	1 cut(s)	283
Eco130I	CCWWGG	1 cut(s)	448
Eco147I	AGGCCT	1 cut(s)	493
Eco47I	GGWCC	1 cut(s)	80
Eco88I	CYCGRG	1 cut(s)	50
EcoO109I	RGGNCCY	1 cut(s)	80
EcoT14I	CCWWGG	1 cut(s)	448
ErhI	CCWWGG	1 cut(s)	448
FaeI	CATG	2 cut(s)	338, 452
FaiI	YATR	8 cut(s)	23, 215, 288, 336, 450, 455, 479, 505
FalI	AAGNNNNNCTT	2 cut(s)	302, 334
FatI	CATG	2 cut(s)	334, 448
FblI	GTMKAC	2 cut(s)	258, 454
Fnu4HI	GCNGC	2 cut(s)	237, 498
FokI	GGATG	1 cut(s)	235
Fsp4HI	GCNGC	2 cut(s)	237, 498
GluI	GCNGC	2 cut(s)	237, 498
GsaI	CCCAGC	1 cut(s)	185
HaeIII	GGCC	1 cut(s)	493
Hin1II	CATG	2 cut(s)	338, 452
HindIII	AAGCTT	1 cut(s)	293
HinfI	GANTC	3 cut(s)	5, 48, 124
Hpy166II	GTNNAC	2 cut(s)	259, 455
Hpy188I	TCNGA	2 cut(s)	301, 405
Hpy188III	TCNNGA	4 cut(s)	52, 121, 128, 335
Hpy8I	GTNNAC	2 cut(s)	259, 455
HpyAV	CCTTC	1 cut(s)	483
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4IV	ACGT	2 cut(s)	418, 441
HpyCH4V	TGCA	3 cut(s)	322, 343, 497
HpyF10VI	GCNNNNNNNGC	2 cut(s)	319, 359
HpyF3I	CTNAG	2 cut(s)	192, 369
HpySE526I	ACGT	2 cut(s)	418, 441
Hsp92II	CATG	2 cut(s)	338, 452
Kzo9I	GATC	1 cut(s)	283
LmnI	GCTCC	2 cut(s)	325, 359
LpnPI	CCDG	6 cut(s)	179, 195, 250, 308, 329, 397
MaeII	ACGT	2 cut(s)	418, 441
MaeIII	GTNAC	2 cut(s)	187, 470
MalI	GATC	1 cut(s)	285
MboI	GATC	1 cut(s)	283
MfeI	CAATTG	1 cut(s)	137
MluCI	AATT	3 cut(s)	137, 205, 338
MlyI	GAGTC	1 cut(s)	42
MnlI	CCTC	6 cut(s)	19, 98, 128, 149, 323, 349
MspA1I	CMGCKG	2 cut(s)	185, 500
MunI	CAATTG	1 cut(s)	137
MwoI	GCNNNNNNNGC	2 cut(s)	319, 359
NcoI	CCATGG	1 cut(s)	448
NdeII	GATC	1 cut(s)	283
NlaIII	CATG	2 cut(s)	338, 452
NlaIV	GGNNCC	3 cut(s)	82, 228, 361
NmeAIII	GCCGAG	1 cut(s)	379
NmuCI	GTSAC	1 cut(s)	470
PaeR7I	CTCGAG	1 cut(s)	50
PagI	TCATGA	1 cut(s)	334
PceI	AGGCCT	1 cut(s)	493
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PfeI	GAWTC	2 cut(s)	5, 124
PkrI	GCNGC	2 cut(s)	238, 499
PleI	GAGTC	1 cut(s)	42
PpsI	GAGTC	1 cut(s)	42
PpuMI	RGGWCCY	1 cut(s)	80
Psp1406I	AACGTT	1 cut(s)	441
Psp5II	RGGWCCY	1 cut(s)	80
PspFI	CCCAGC	1 cut(s)	181
PspN4I	GGNNCC	3 cut(s)	82, 228, 361
PspPI	GGNCC	1 cut(s)	80
PspPPI	RGGWCCY	1 cut(s)	80
PstI	CTGCAG	1 cut(s)	499
PvuII	CAGCTG	2 cut(s)	185, 500
SatI	GCNGC	2 cut(s)	237, 498
Sau3AI	GATC	1 cut(s)	283
Sau96I	GGNCC	1 cut(s)	80
SchI	GAGTC	1 cut(s)	42
SfcI	CTRYAG	1 cut(s)	495
Sfr274I	CTCGAG	1 cut(s)	50
SinI	GGWCC	1 cut(s)	80
SlaI	CTCGAG	1 cut(s)	50
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
Sse9I	AATT	3 cut(s)	137, 205, 338
SseBI	AGGCCT	1 cut(s)	493
SsiI	CCGC	3 cut(s)	45, 162, 237
StuI	AGGCCT	1 cut(s)	493
StyI	CCWWGG	1 cut(s)	448
TaaI	ACNGT	1 cut(s)	271
TaiI	ACGT	2 cut(s)	421, 444
TaqI	TCGA	2 cut(s)	51, 276
TasI	AATT	3 cut(s)	137, 205, 338
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	2 cut(s)	5, 124
TscAI	CASTG	1 cut(s)	466
TseFI	GTSAC	1 cut(s)	470
TseI	GCWGC	1 cut(s)	497
Tsp45I	GTSAC	1 cut(s)	470
TspDTI	ATGAA	3 cut(s)	202, 351, 450
TspRI	CASTG	1 cut(s)	466
VpaK11BI	GGWCC	1 cut(s)	80
XhoI	CTCGAG	1 cut(s)	50
XmiI	GTMKAC	2 cut(s)	258, 454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.