Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003361

Physical Location & Seq

Genomic Coordinates Forward (+)

1986080 .. 1990461

Gene Structure 4382 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0025100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGAGACAGAGAAGAACCAGAAATTACCAGTCTTGAACCAGAAACGTCCGGCAATGACCAAGAAAGGAGCTTATGCTGCCATTTCGTATATGGCCTCCGCAGTTCTCTTGATAATGTTCAACAAAGCAGCCCTTTCTTCATACAATTTCCAATCTGCGAATGTCATCACTCTTTTTCAGATGGTATCGTCATGTGCATTGCTGTATGCAATGAAATACTGGAAGATTATTTCTTTCACAGTCGAGCCACATAGCACTACGAACAATCCAGTTAACCTTGTACCATTGAAGACGTTGGTACACACTCTTCCTCTCGCGATGTCTTATTTGCTTTACATGTTGGTTACAATGGAATCAGTCCGTGGTATAAATGTTCCCATGTACACCACCCTTAGACGAACCACTATAGCTTTTACAATGGTCGTTGAGTATATTTTGACGGGGCAGAAACATTCATATCGTGTTTTGGGCAGTGTGGGGATAGTTATACTGGGTGCATTTATTGCTGGAGCTCGGGATCTGTCATTTGATGCCTATGGCTATGCTGTTGTCTTTGTTGCAAACATCTCTACAGCAATATATCTTGCTTCTATAGCTCATATTGGTAAATCAAGTGGTCTTAGTACGTTTGGCTTAATGTGGTGCAATGGAATAATATGTGGACCAGTCTTGCTGTTTTGGACATCAATCCGAGGTGATCTAACAGGGATGATGAACTTCCCACATATATTCTCCCCTGGTTTTCAGGCCGTGATGCTTCTTTCCTGTGTTATGGCTTTTTCAATAAATTATTGCGTGTTTTGGAATACAACCCTCAATTCAGCTCTCACACAGACAATTTGTGGTAATATGAAGGATCTTCTGACTATTGGACTTGGCTGGTTGCTATTTGGCGGACTTCCATTTGATTTGTACAATGTTGCTGGCCAATCTCTGGGTTTTCTCGGGTCCTGTTTGTATGCTTACTGTAAACTCAGAGGGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002237 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005887 GO:0006082 GO:0006508 GO:0006518 GO:0006520 GO:0006536 GO:0006575 GO:0006749 GO:0006751 GO:0006790 GO:0006805 GO:0006807 GO:0006950 GO:0006979 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008242 GO:0009056 GO:0009064 GO:0009410 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009987 GO:0010033 GO:0010467 GO:0014070 GO:0016020 GO:0016021 GO:0016485 GO:0016740 GO:0016746 GO:0016755 GO:0016756 GO:0016787 GO:0019538 GO:0019752 GO:0031179 GO:0031224 GO:0031226 GO:0031638 GO:0032355 GO:0032496 GO:0032502 GO:0033554 GO:0033993 GO:0034097 GO:0034599 GO:0034612 GO:0034641 GO:0036374 GO:0042219 GO:0042221 GO:0043170 GO:0043171 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043648 GO:0044237 GO:0044238 GO:0044248 GO:0044273 GO:0044281 GO:0044421 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051604 GO:0051704 GO:0051707 GO:0051716 GO:0070011 GO:0070887 GO:0071466 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00430 ko00460 ko00480 ko00590 ko01100 map00430 map00460 map00480 map00590 map01100

Pfam Domains

Protein Families

G_glu_transpept

Protein Analysis

328

Amino Acids

36.07

Weight (kDa)

9.34

Isoelectric Point (pI)

36.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	24 - 320	2.1e-10	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29210 AT4G29210 AT4G39650
fragaria_vesca	FvH4_1g06610 FvH4_1g06610
malus_domestica	MD02G1069100.v1.1 MD15G1200700.v1.1
prunus_persica	Prupe.7G216500_v2.0.a1
pyrus_communis	pycom02g05470 pycom15g17820
rosa_chinensis	RchiOBHm_Chr1g0323641 RchiOBHm_Chr2g0092341 RchiOBHm_Chr2g0139001 RchiOBHm_Chr5g0064951
rosa_laevigata	RLG00000015286 RLG00000016301 RLG00000018659
rosa_multiflora	Rmu_sc0000461.1_g000012 Rmu_sc0000461.1_g000013 Rmu_sc0003289.1_g000009 Rmu_sc0006014.1_g000003 Rmu_sc0006014.1_g000004 Rmu_sc0010108.1_g000002
rosa_roxburghii	Rroxscaffold_3G00249440
rosa_rugosa	Rorug02G0025000 Rorug02G0025100
rosa_samantha	Rh1CG057300 Rh1DG061100 Rh2AG071000 Rh2BG070600 Rh2BG414200 Rh2CG072000 Rh2DG069500
rosa_wichuraiana	Rw0G021800 Rw2G006130 Rw2G032860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	934
AccII	CGCG	1 cut(s)	317
AciI	CCGC	2 cut(s)	99, 894
AclWI	GGATC	2 cut(s)	525, 864
AcoI	YGGCCR	1 cut(s)	925
AfaI	GTAC	5 cut(s)	282, 300, 383, 625, 914
AfiI	CCNNNNNNNGG	1 cut(s)	934
AflIII	ACRYGT	1 cut(s)	336
AgsI	TTSAA	4 cut(s)	37, 121, 289, 783
AjnI	CCWGG	1 cut(s)	736
AluBI	AGCT	5 cut(s)	71, 410, 512, 596, 824
AluI	AGCT	5 cut(s)	71, 410, 512, 596, 824
Alw21I	GWGCWC	1 cut(s)	514
AlwI	GGATC	2 cut(s)	525, 864
Ama87I	CYCGRG	2 cut(s)	513, 944
AoxI	GGCC	3 cut(s)	93, 747, 925
ApeKI	GCWGC	2 cut(s)	77, 128
AspS9I	GGNCC	2 cut(s)	662, 948
AsuHPI	GGTGA	1 cut(s)	707
AvaI	CYCGRG	2 cut(s)	513, 944
AvaII	GGWCC	2 cut(s)	662, 948
BalI	TGGCCA	1 cut(s)	927
BanII	GRGCYC	1 cut(s)	514
BarI	GAAGNNNNNNTAC	2 cut(s)	291, 323
BbsI	GAAGAC	1 cut(s)	296
Bbv12I	GWGCWC	1 cut(s)	514
BbvI	GCAGC	2 cut(s)	64, 140
BccI	CCATC	1 cut(s)	175
BceAI	ACGGC	1 cut(s)	734
BciT130I	CCWGG	1 cut(s)	738
BfmI	CTRYAG	3 cut(s)	405, 570, 591
BisI	GCNGC	2 cut(s)	78, 129
BlsI	GCNGC	2 cut(s)	79, 130
Bme1390I	CCNGG	1 cut(s)	738
Bme18I	GGWCC	2 cut(s)	662, 948
BmeT110I	CYCGRG	2 cut(s)	513, 944
BmgT120I	GGNCC	2 cut(s)	662, 948
BmiI	GGNNCC	1 cut(s)	949
BmrFI	CCNGG	1 cut(s)	738
BmrI	ACTGGG	1 cut(s)	500
BmsI	GCATC	2 cut(s)	520, 744
BmuI	ACTGGG	1 cut(s)	500
BpiI	GAAGAC	1 cut(s)	296
BpmI	CTGGAG	1 cut(s)	528
BsaJI	CCNNGG	3 cut(s)	361, 691, 736
Bsc4I	CCNNNNNNNGG	1 cut(s)	934
Bse1I	ACTGG	5 cut(s)	29, 224, 269, 495, 665
Bse3DI	GCAATG	4 cut(s)	60, 197, 216, 652
BseBI	CCWGG	1 cut(s)	738
BseDI	CCNNGG	3 cut(s)	361, 691, 736
BseGI	GGATG	1 cut(s)	714
BseLI	CCNNNNNNNGG	1 cut(s)	934
BseMI	GCAATG	4 cut(s)	60, 197, 216, 652
BseNI	ACTGG	5 cut(s)	29, 224, 269, 495, 665
BseXI	GCAGC	2 cut(s)	64, 140
Bsh1236I	CGCG	1 cut(s)	317
BshFI	GGCC	3 cut(s)	95, 749, 927
BsiHKAI	GWGCWC	1 cut(s)	514
BsiHKCI	CYCGRG	2 cut(s)	513, 944
BsiSI	CCGG	1 cut(s)	50
BslI	CCNNNNNNNGG	1 cut(s)	934
BsnI	GGCC	3 cut(s)	95, 749, 927
BsoBI	CYCGRG	2 cut(s)	513, 944
Bsp1286I	GDGCHC	1 cut(s)	514
Bsp1407I	TGTACA	2 cut(s)	381, 912
Bsp143I	GATC	3 cut(s)	517, 697, 856
Bsp68I	TCGCGA	1 cut(s)	317
BspACI	CCGC	2 cut(s)	99, 894
BspANI	GGCC	3 cut(s)	95, 749, 927
BspCNI	CTCAG	1 cut(s)	987
BspFNI	CGCG	1 cut(s)	317
BspLI	GGNNCC	1 cut(s)	949
BspPI	GGATC	2 cut(s)	525, 864
BsrDI	GCAATG	4 cut(s)	60, 197, 216, 652
BsrGI	TGTACA	2 cut(s)	381, 912
BsrI	ACTGG	5 cut(s)	29, 224, 269, 495, 665
BssECI	CCNNGG	3 cut(s)	361, 691, 736
BssMI	GATC	3 cut(s)	517, 697, 856
Bst2UI	CCWGG	1 cut(s)	738
Bst4CI	ACNGT	2 cut(s)	241, 968
Bst6I	CTCTTC	1 cut(s)	312
BstAPI	GCANNNNNTGC	1 cut(s)	503
BstAUI	TGTACA	2 cut(s)	381, 912
BstC8I	GCNNGC	1 cut(s)	925
BstDEI	CTNAG	3 cut(s)	392, 620, 974
BstDSI	CCRYGG	1 cut(s)	361
BstF5I	GGATG	1 cut(s)	714
BstFNI	CGCG	1 cut(s)	317
BstKTI	GATC	3 cut(s)	520, 700, 859
BstMBI	GATC	3 cut(s)	517, 697, 856
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 503, 593
BstNI	CCWGG	1 cut(s)	738
BstNSI	RCATGY	1 cut(s)	340
BstSCI	CCNGG	1 cut(s)	736
BstSFI	CTRYAG	3 cut(s)	405, 570, 591
BstUI	CGCG	1 cut(s)	317
BstV1I	GCAGC	2 cut(s)	64, 140
BstV2I	GAAGAC	1 cut(s)	296
BstX2I	RGATCY	2 cut(s)	517, 856
BstYI	RGATCY	2 cut(s)	517, 856
BsuRI	GGCC	3 cut(s)	95, 749, 927
BtgI	CCRYGG	1 cut(s)	361
BtgZI	GCGATG	1 cut(s)	332
BtsCI	GGATG	1 cut(s)	714
BtsI	GCAGTG	1 cut(s)	478
BtsIMutI	CAGTG	1 cut(s)	478
BtuMI	TCGCGA	1 cut(s)	317
Cac8I	GCNNGC	1 cut(s)	925
Cfr13I	GGNCC	2 cut(s)	662, 948
Csp6I	GTAC	5 cut(s)	281, 299, 382, 624, 913
CviAII	CATG	3 cut(s)	192, 337, 379
CviQI	GTAC	5 cut(s)	281, 299, 382, 624, 913
DdeI	CTNAG	3 cut(s)	392, 620, 974
DpnI	GATC	3 cut(s)	519, 699, 858
DpnII	GATC	3 cut(s)	517, 697, 856
EaeI	YGGCCR	1 cut(s)	925
Eam1104I	CTCTTC	1 cut(s)	312
EarI	CTCTTC	1 cut(s)	312
EciI	GGCGGA	1 cut(s)	909
Ecl136II	GAGCTC	1 cut(s)	512
Eco24I	GRGCYC	1 cut(s)	514
Eco47I	GGWCC	2 cut(s)	662, 948
Eco53kI	GAGCTC	1 cut(s)	512
Eco88I	CYCGRG	2 cut(s)	513, 944
EcoICRI	GAGCTC	1 cut(s)	512
EcoO109I	RGGNCCY	1 cut(s)	948
EcoRII	CCWGG	1 cut(s)	736
EcoT38I	GRGCYC	1 cut(s)	514
FaeI	CATG	3 cut(s)	195, 340, 382
FalI	AAGNNNNNCTT	2 cut(s)	117, 149
FatI	CATG	3 cut(s)	191, 336, 378
Fnu4HI	GCNGC	2 cut(s)	78, 129
FokI	GGATG	1 cut(s)	721
FriOI	GRGCYC	1 cut(s)	514
Fsp4HI	GCNGC	2 cut(s)	78, 129
GluI	GCNGC	2 cut(s)	78, 129
GsuI	CTGGAG	1 cut(s)	528
HaeIII	GGCC	3 cut(s)	95, 749, 927
HapII	CCGG	1 cut(s)	50
Hin1II	CATG	3 cut(s)	195, 340, 382
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HinfI	GANTC	1 cut(s)	353
HpaI	GTTAAC	1 cut(s)	274
HpaII	CCGG	1 cut(s)	50
HphI	GGTGA	1 cut(s)	707
Hpy166II	GTNNAC	5 cut(s)	274, 301, 384, 662, 971
Hpy188I	TCNGA	4 cut(s)	180, 692, 864, 977
Hpy188III	TCNNGA	4 cut(s)	34, 109, 316, 515
Hpy8I	GTNNAC	5 cut(s)	274, 301, 384, 662, 971
HpyAV	CCTTC	1 cut(s)	847
HpyCH4III	ACNGT	2 cut(s)	241, 968
HpyCH4IV	ACGT	3 cut(s)	46, 293, 626
HpyCH4V	TGCA	5 cut(s)	197, 209, 497, 560, 645
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 503, 593
HpyF3I	CTNAG	3 cut(s)	392, 620, 974
HpySE526I	ACGT	3 cut(s)	46, 293, 626
Hsp92II	CATG	3 cut(s)	195, 340, 382
KspAI	GTTAAC	1 cut(s)	274
Kzo9I	GATC	3 cut(s)	517, 697, 856
LmnI	GCTCC	2 cut(s)	68, 509
Lsp1109I	GCAGC	2 cut(s)	64, 140
LweI	GCATC	2 cut(s)	520, 744
MaeII	ACGT	3 cut(s)	46, 293, 626
MaeIII	GTNAC	1 cut(s)	343
MalI	GATC	3 cut(s)	519, 699, 858
MboI	GATC	3 cut(s)	517, 697, 856
MboII	GAAGA	6 cut(s)	25, 129, 235, 299, 301, 851
MflI	RGATCY	2 cut(s)	517, 856
MhlI	GDGCHC	1 cut(s)	514
MlsI	TGGCCA	1 cut(s)	927
MluCI	AATT	5 cut(s)	23, 145, 787, 817, 837
MluNI	TGGCCA	1 cut(s)	927
MnlI	CCTC	5 cut(s)	106, 321, 686, 824, 971
Mox20I	TGGCCA	1 cut(s)	927
MscI	TGGCCA	1 cut(s)	927
MseI	TTAA	2 cut(s)	273, 635
Msp20I	TGGCCA	1 cut(s)	927
MspI	CCGG	1 cut(s)	50
MspR9I	CCNGG	1 cut(s)	738
MvaI	CCWGG	1 cut(s)	738
MvnI	CGCG	1 cut(s)	317
MwoI	GCNNNNNNNGC	3 cut(s)	77, 503, 593
NdeII	GATC	3 cut(s)	517, 697, 856
NlaIII	CATG	3 cut(s)	195, 340, 382
NlaIV	GGNNCC	1 cut(s)	949
NruI	TCGCGA	1 cut(s)	317
NspI	RCATGY	1 cut(s)	340
PciI	ACATGT	1 cut(s)	336
PfeI	GAWTC	1 cut(s)	353
PflMI	CCANNNNNTGG	1 cut(s)	934
PkrI	GCNGC	2 cut(s)	79, 130
PpuMI	RGGWCCY	1 cut(s)	948
PscI	ACATGT	1 cut(s)	336
Psp124BI	GAGCTC	1 cut(s)	514
Psp5II	RGGWCCY	1 cut(s)	948
Psp6I	CCWGG	1 cut(s)	736
PspGI	CCWGG	1 cut(s)	736
PspN4I	GGNNCC	1 cut(s)	949
PspPI	GGNCC	2 cut(s)	662, 948
PspPPI	RGGWCCY	1 cut(s)	948
PsuI	RGATCY	2 cut(s)	517, 856
RruI	TCGCGA	1 cut(s)	317
RsaI	GTAC	5 cut(s)	282, 300, 383, 625, 914
RsaNI	GTAC	5 cut(s)	281, 299, 382, 624, 913
SacI	GAGCTC	1 cut(s)	514
SaqAI	TTAA	2 cut(s)	273, 635
SatI	GCNGC	2 cut(s)	78, 129
Sau3AI	GATC	3 cut(s)	517, 697, 856
Sau96I	GGNCC	2 cut(s)	662, 948
ScrFI	CCNGG	1 cut(s)	738
SduI	GDGCHC	1 cut(s)	514
SfaNI	GCATC	2 cut(s)	520, 744
SfcI	CTRYAG	3 cut(s)	405, 570, 591
SinI	GGWCC	2 cut(s)	662, 948
Sse9I	AATT	5 cut(s)	23, 145, 787, 817, 837
SsiI	CCGC	2 cut(s)	99, 894
SstI	GAGCTC	1 cut(s)	514
StyD4I	CCNGG	1 cut(s)	736
TaaI	ACNGT	2 cut(s)	241, 968
TaiI	ACGT	3 cut(s)	49, 296, 629
TaqI	TCGA	1 cut(s)	243
TasI	AATT	5 cut(s)	23, 145, 787, 817, 837
TatI	WGTACW	2 cut(s)	381, 912
TfiI	GAWTC	1 cut(s)	353
Tru1I	TTAA	2 cut(s)	273, 635
Tru9I	TTAA	2 cut(s)	273, 635
TscAI	CASTG	1 cut(s)	478
TseI	GCWGC	2 cut(s)	77, 128
TspDTI	ATGAA	5 cut(s)	129, 227, 444, 728, 866
TspGWI	ACGGA	1 cut(s)	350
TspRI	CASTG	1 cut(s)	478
Van91I	CCANNNNNTGG	1 cut(s)	934
VpaK11BI	GGWCC	2 cut(s)	662, 948
XceI	RCATGY	1 cut(s)	340
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.