Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig01013

Orthogroup ID

OG0003361

Physical Location & Seq

Genomic Coordinates Forward (+)

6098 .. 6717

Gene Structure 620 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G021800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGACTCCTATTATAGTCACAAAGGATAATCATTTGGTTGGTGTGCTTGGAGGTAGTGGTGGTTTGAACATTATCCCAGTTGTAACTCAGGTGTTTATCAATTATTTCATATTGGGGATGGAACCTTTAGCCGCAGTTCAAAGTCCAAGGGTCTACCACAGGCTAATACCAAACATAGTGTCCTATGAAAAATGGACTGTAATCGATGGAGATCATATCGAGCTTTCAAATGAAAGAAAGCTCTTCTTGCGGGAGCGGGGTCATGAATTGCAGGCTAAAGCCGGAGGAGCCATCACGCAACTCATTGTTCAAAGACTTGGAAACCCTATTCAGATGGCCAGGAAATGTGGTAGAAGTTCAAATGAAAATGTTTTCCATGGTATACTCACTGCTGTAAGTGACCCTAGAAAAGATGGAAGGCCTGCAGCTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002237 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005887 GO:0006082 GO:0006508 GO:0006518 GO:0006520 GO:0006536 GO:0006575 GO:0006749 GO:0006751 GO:0006790 GO:0006805 GO:0006807 GO:0006950 GO:0006979 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008242 GO:0009056 GO:0009064 GO:0009410 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009987 GO:0010033 GO:0010467 GO:0014070 GO:0016020 GO:0016021 GO:0016485 GO:0016740 GO:0016746 GO:0016755 GO:0016756 GO:0016787 GO:0019538 GO:0019752 GO:0031179 GO:0031224 GO:0031226 GO:0031638 GO:0032355 GO:0032496 GO:0032502 GO:0033554 GO:0033993 GO:0034097 GO:0034599 GO:0034612 GO:0034641 GO:0036374 GO:0042219 GO:0042221 GO:0043170 GO:0043171 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043648 GO:0044237 GO:0044238 GO:0044248 GO:0044273 GO:0044281 GO:0044421 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051604 GO:0051704 GO:0051707 GO:0051716 GO:0070011 GO:0070887 GO:0071466 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00430 ko00460 ko00480 ko00590 ko01100 map00430 map00460 map00480 map00590 map01100

Pfam Domains

Protein Families

G_glu_transpept

Protein Analysis

144

Amino Acids

15.83

Weight (kDa)

9.51

Isoelectric Point (pI)

35.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G_glu_transpept	PF01019	1 - 139	1.1e-19	Gamma-glutamyltranspeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29210 AT4G29210 AT4G39650
fragaria_vesca	FvH4_1g06610 FvH4_1g06610
malus_domestica	MD02G1069100.v1.1 MD15G1200700.v1.1
prunus_persica	Prupe.7G216500_v2.0.a1
pyrus_communis	pycom02g05470 pycom15g17820
rosa_chinensis	RchiOBHm_Chr1g0323641 RchiOBHm_Chr2g0092341 RchiOBHm_Chr2g0139001 RchiOBHm_Chr5g0064951
rosa_laevigata	RLG00000015286 RLG00000016301 RLG00000018659
rosa_multiflora	Rmu_sc0000461.1_g000012 Rmu_sc0000461.1_g000013 Rmu_sc0003289.1_g000009 Rmu_sc0006014.1_g000003 Rmu_sc0006014.1_g000004 Rmu_sc0010108.1_g000002
rosa_roxburghii	Rroxscaffold_3G00249440
rosa_rugosa	Rorug02G0025000 Rorug02G0025100
rosa_samantha	Rh1CG057300 Rh1DG061100 Rh2AG071000 Rh2BG070600 Rh2BG414200 Rh2CG072000 Rh2DG069500
rosa_wichuraiana	Rw0G021800 Rw2G006130 Rw2G032860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	256
AccI	GTMKAC	2 cut(s)	153, 382
AciI	CCGC	3 cut(s)	132, 250, 256
AcoI	YGGCCR	1 cut(s)	336
AgsI	TTSAA	5 cut(s)	67, 140, 228, 311, 360
AjnI	CCWGG	1 cut(s)	338
AluBI	AGCT	3 cut(s)	223, 241, 428
AluI	AGCT	3 cut(s)	223, 241, 428
AoxI	GGCC	2 cut(s)	336, 419
ApeKI	GCWGC	1 cut(s)	425
ArsI	GACNNNNNNTTYG	2 cut(s)	164, 196
BalI	TGGCCA	1 cut(s)	338
BccI	CCATC	5 cut(s)	112, 200, 299, 328, 407
BciT130I	CCWGG	1 cut(s)	340
BfaI	CTAG	1 cut(s)	405
BfmI	CTRYAG	1 cut(s)	423
BisI	GCNGC	2 cut(s)	132, 426
BlsI	GCNGC	2 cut(s)	133, 427
Bme1390I	CCNGG	1 cut(s)	340
BmiI	GGNNCC	2 cut(s)	123, 289
BmrFI	CCNGG	1 cut(s)	340
BmrI	ACTGGG	1 cut(s)	71
BmuI	ACTGGG	1 cut(s)	71
Bsa29I	ATCGAT	1 cut(s)	204
BsaBI	GATNNNNATC	1 cut(s)	210
BsaJI	CCNNGG	2 cut(s)	146, 376
Bse1I	ACTGG	1 cut(s)	77
Bse8I	GATNNNNATC	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	340
BseCI	ATCGAT	1 cut(s)	204
BseDI	CCNNGG	2 cut(s)	146, 376
BseGI	GGATG	1 cut(s)	123
BseJI	GATNNNNATC	1 cut(s)	210
BseMII	CTCAG	1 cut(s)	101
BseNI	ACTGG	1 cut(s)	77
BseRI	GAGGAG	1 cut(s)	300
BshFI	GGCC	2 cut(s)	338, 421
BshVI	ATCGAT	1 cut(s)	204
BsiSI	CCGG	1 cut(s)	282
BsnI	GGCC	2 cut(s)	338, 421
Bsp143I	GATC	1 cut(s)	211
Bsp19I	CCATGG	1 cut(s)	376
BspACI	CCGC	3 cut(s)	132, 250, 256
BspANI	GGCC	2 cut(s)	338, 421
BspCNI	CTCAG	1 cut(s)	100
BspDI	ATCGAT	1 cut(s)	204
BspHI	TCATGA	1 cut(s)	262
BspLI	GGNNCC	2 cut(s)	123, 289
BspMAI	CTGCAG	1 cut(s)	427
BspQI	GCTCTTC	1 cut(s)	248
BsrBI	CCGCTC	1 cut(s)	256
BsrI	ACTGG	1 cut(s)	77
BssECI	CCNNGG	2 cut(s)	146, 376
BssMI	GATC	1 cut(s)	211
BssNAI	GTATAC	1 cut(s)	383
BssT1I	CCWWGG	2 cut(s)	146, 376
Bst1107I	GTATAC	1 cut(s)	383
Bst2UI	CCWGG	1 cut(s)	340
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	1 cut(s)	248
BstC8I	GCNNGC	2 cut(s)	273, 423
BstDEI	CTNAG	1 cut(s)	87
BstDSI	CCRYGG	1 cut(s)	376
BstF5I	GGATG	1 cut(s)	123
BstKTI	GATC	1 cut(s)	214
BstMBI	GATC	1 cut(s)	211
BstMWI	GCNNNNNNNGC	2 cut(s)	247, 287
BstNI	CCWGG	1 cut(s)	340
BstSCI	CCNGG	1 cut(s)	338
BstSFI	CTRYAG	1 cut(s)	423
BstZ17I	GTATAC	1 cut(s)	383
Bsu15I	ATCGAT	1 cut(s)	204
BsuRI	GGCC	2 cut(s)	338, 421
BsuTUI	ATCGAT	1 cut(s)	204
BtgI	CCRYGG	1 cut(s)	376
BtsCI	GGATG	1 cut(s)	123
BtsI	GCAGTG	1 cut(s)	387
BtsIMutI	CAGTG	1 cut(s)	387
Cac8I	GCNNGC	2 cut(s)	273, 423
CciI	TCATGA	1 cut(s)	262
ClaI	ATCGAT	1 cut(s)	204
CviAII	CATG	2 cut(s)	263, 377
DdeI	CTNAG	1 cut(s)	87
DpnI	GATC	1 cut(s)	213
DpnII	GATC	1 cut(s)	211
EaeI	YGGCCR	1 cut(s)	336
Eam1104I	CTCTTC	1 cut(s)	248
EarI	CTCTTC	1 cut(s)	248
Eco130I	CCWWGG	2 cut(s)	146, 376
Eco147I	AGGCCT	1 cut(s)	421
EcoRII	CCWGG	1 cut(s)	338
EcoT14I	CCWWGG	2 cut(s)	146, 376
ErhI	CCWWGG	2 cut(s)	146, 376
FaeI	CATG	2 cut(s)	266, 380
FaiI	YATR	9 cut(s)	14, 110, 176, 186, 216, 264, 378, 383, 433
FalI	AAGNNNNNCTT	2 cut(s)	230, 262
FatI	CATG	2 cut(s)	262, 376
FauI	CCCGC	2 cut(s)	243, 249
FblI	GTMKAC	2 cut(s)	153, 382
Fnu4HI	GCNGC	2 cut(s)	132, 426
FokI	GGATG	1 cut(s)	130
Fsp4HI	GCNGC	2 cut(s)	132, 426
FspBI	CTAG	1 cut(s)	405
GluI	GCNGC	2 cut(s)	132, 426
HaeIII	GGCC	2 cut(s)	338, 421
HapII	CCGG	1 cut(s)	282
Hin1II	CATG	2 cut(s)	266, 380
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	282
Hpy166II	GTNNAC	2 cut(s)	154, 383
Hpy188I	TCNGA	1 cut(s)	333
Hpy188III	TCNNGA	1 cut(s)	263
Hpy8I	GTNNAC	2 cut(s)	154, 383
HpyAV	CCTTC	1 cut(s)	411
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4V	TGCA	2 cut(s)	271, 425
HpyF10VI	GCNNNNNNNGC	2 cut(s)	247, 287
HpyF3I	CTNAG	1 cut(s)	87
Hsp92II	CATG	2 cut(s)	266, 380
Kzo9I	GATC	1 cut(s)	211
LguI	GCTCTTC	1 cut(s)	248
LmnI	GCTCC	2 cut(s)	253, 287
LpnPI	CCDG	7 cut(s)	74, 90, 145, 257, 295, 325, 352
MaeI	CTAG	1 cut(s)	405
MaeIII	GTNAC	3 cut(s)	16, 82, 398
MalI	GATC	1 cut(s)	213
MbiI	CCGCTC	1 cut(s)	256
MboI	GATC	1 cut(s)	211
MboII	GAAGA	1 cut(s)	235
MlsI	TGGCCA	1 cut(s)	338
MluCI	AATT	2 cut(s)	100, 266
MluNI	TGGCCA	1 cut(s)	338
MnlI	CCTC	2 cut(s)	44, 278
Mox20I	TGGCCA	1 cut(s)	338
MscI	TGGCCA	1 cut(s)	338
Msp20I	TGGCCA	1 cut(s)	338
MspA1I	CMGCKG	1 cut(s)	428
MspI	CCGG	1 cut(s)	282
MspR9I	CCNGG	1 cut(s)	340
MvaI	CCWGG	1 cut(s)	340
MwoI	GCNNNNNNNGC	2 cut(s)	247, 287
NcoI	CCATGG	1 cut(s)	376
NdeII	GATC	1 cut(s)	211
NlaIII	CATG	2 cut(s)	266, 380
NlaIV	GGNNCC	2 cut(s)	123, 289
NmuCI	GTSAC	2 cut(s)	16, 398
PagI	TCATGA	1 cut(s)	262
PceI	AGGCCT	1 cut(s)	421
PciSI	GCTCTTC	1 cut(s)	248
PkrI	GCNGC	2 cut(s)	133, 427
Psp6I	CCWGG	1 cut(s)	338
PspGI	CCWGG	1 cut(s)	338
PspN4I	GGNNCC	2 cut(s)	123, 289
PstI	CTGCAG	1 cut(s)	427
PvuII	CAGCTG	1 cut(s)	428
SapI	GCTCTTC	1 cut(s)	248
SatI	GCNGC	2 cut(s)	132, 426
Sau3AI	GATC	1 cut(s)	211
ScrFI	CCNGG	1 cut(s)	340
SetI	ASST	6 cut(s)	55, 93, 127, 225, 243, 430
SfcI	CTRYAG	1 cut(s)	423
Sse9I	AATT	2 cut(s)	100, 266
SseBI	AGGCCT	1 cut(s)	421
SsiI	CCGC	3 cut(s)	132, 250, 256
SspMI	CTAG	1 cut(s)	405
StuI	AGGCCT	1 cut(s)	421
StyD4I	CCNGG	1 cut(s)	338
StyI	CCWWGG	2 cut(s)	146, 376
TaaI	ACNGT	1 cut(s)	199
TaqI	TCGA	2 cut(s)	204, 219
TasI	AATT	2 cut(s)	100, 266
TauI	GCSGC	1 cut(s)	134
TscAI	CASTG	1 cut(s)	394
TseFI	GTSAC	2 cut(s)	16, 398
TseI	GCWGC	1 cut(s)	425
Tsp45I	GTSAC	2 cut(s)	16, 398
TspDTI	ATGAA	5 cut(s)	97, 201, 246, 279, 378
TspRI	CASTG	1 cut(s)	394
XmiI	GTMKAC	2 cut(s)	153, 382
XspI	CTAG	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.