Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002233

Physical Location & Seq

Genomic Coordinates Reverse (-)

14733586 .. 14735329

Gene Structure 1744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGATGGAGTGGGATAAGCAGCAACTGAAAGAGCAGCAAGAGATGGAGGGGAACGGGAATGGGAGTGGGAATAATGGGAATGGAGGAGTGATGTATGTGAAAGTGATGACTGATGAGCAGTTGGAGACTCTGAGGAAACAGATTGCAGTTTATGCCACCATCTGTGAGCAGCTTGTTGAGATGCACAAGAACCTCACTGCCCAGCAAGATCTTGCAGGAGTCAGGATGGGAAATCTGTACTGTGATCCGCTGATGACATCCACCGGCCACAAAATTACCGCCAGGCAGCGGTGGACGCCAACACCAGTGCAGCTCCAAATTCTTGAGCGTTTATTCGAGCAAGGCAATGGAACTCCAAGCAAGCAGAAGATCAAGGAGATCACCACTGAGCTGAGCCAGCACGGACAAATTTCCGAAACAAATGTGTACAATTGGTTCCAGAACAGGCGCATTTGGATGCTCGATCAAAAAGGAAGCAGCAAAATGCAGCATGTAACCATGCTGAATCAGAAGTGGAGACGGAAGTCGACTCACCCAAGGACAAGAAAACTAGACCCGAGGAAACGTTTCAGTCCCAGCAGCACTCAGCTCAAAGGACCGAAGATTTGTGCTTCCAGAGCCCGGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

210

Amino Acids

24.2

Weight (kDa)

9.97

Isoelectric Point (pI)

43.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	95 - 151	7.3e-15	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35550
fragaria_vesca	FvH4_1g10280 FvH4_1g10280 FvH4_1g10280 FvH4_1g10280 FvH4_5g03570 FvH4_5g25470 FvH4_5g25470
malus_domestica	MD00G1207300.v1.1 MD02G1114900.v1.1 MD15G1230800.v1.1
prunus_persica	Prupe.5G009600_v2.0.a1 Prupe.5G009600_v2.0.a1 Prupe.7G183300_v2.0.a1 Prupe.7G183300_v2.0.a1 Prupe.7G183300_v2.0.a1
pyrus_communis	pycom02g08980 pycom06g00860 pycom15g20570
rosa_chinensis	RchiOBHm_Chr2g0097121 RchiOBHm_Chr7g0215711
rosa_laevigata	RLG00000016704
rosa_multiflora	Rmu_co8032686.1_g000001 Rmu_sc0000898.1_g000018 Rmu_sc0001182.1_g000004 Rmu_sc0022481.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144960 Rroxscaffold_3G00243910
rosa_rugosa	Rorug02G0064200 Rorug02G0064300 Rorug02G0064300 Rorug07G0156200 Rorug07G0156200
rosa_samantha	Rh2AG111500 Rh2BG113500 Rh2CG115800 Rh2DG114800 Rh7AG293200 Rh7BG285500 Rh7CG313300 Rh7DG296500
rosa_wichuraiana	Rw2G008670 Rw7G024960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	527
AciI	CCGC	3 cut(s)	248, 279, 289
AclI	AACGTT	1 cut(s)	565
AclWI	GGATC	1 cut(s)	239
AcoI	YGGCCR	1 cut(s)	265
AcsI	RAATTY	2 cut(s)	318, 408
AcyI	GRCGYC	1 cut(s)	296
AfaI	GTAC	2 cut(s)	239, 428
AfiI	CCNNNNNNNGG	2 cut(s)	288, 621
AjnI	CCWGG	1 cut(s)	281
AluBI	AGCT	4 cut(s)	172, 313, 391, 589
AluI	AGCT	4 cut(s)	172, 313, 391, 589
Alw26I	GTCTC	2 cut(s)	119, 511
AlwI	GGATC	1 cut(s)	239
AlwNI	CAGNNNCTG	1 cut(s)	25
Ama87I	CYCGRG	1 cut(s)	556
AoxI	GGCC	1 cut(s)	265
ApeKI	GCWGC	8 cut(s)	19, 34, 169, 286, 310, 477, 487, 579
ApoI	RAATTY	2 cut(s)	318, 408
ArsI	GACNNNNNNTTYG	2 cut(s)	588, 620
Asp700I	GAANNNNTTC	1 cut(s)	566
AspLEI	GCGC	1 cut(s)	450
AspS9I	GGNCC	1 cut(s)	596
AsuC2I	CCSGG	1 cut(s)	622
AsuHPI	GGTGA	2 cut(s)	373, 524
AvaI	CYCGRG	1 cut(s)	556
AvaII	GGWCC	1 cut(s)	596
BanII	GRGCYC	1 cut(s)	622
BbvI	GCAGC	8 cut(s)	31, 46, 181, 298, 322, 489, 499, 591
BccI	CCATC	3 cut(s)	37, 167, 220
BciT130I	CCWGG	1 cut(s)	283
BcnI	CCSGG	1 cut(s)	622
BcoDI	GTCTC	2 cut(s)	119, 511
BfaI	CTAG	1 cut(s)	551
BglII	AGATCT	1 cut(s)	208
BisI	GCNGC	8 cut(s)	20, 35, 170, 287, 311, 478, 488, 580
BlpI	GCTNAGC	1 cut(s)	392
BlsI	GCNGC	8 cut(s)	21, 36, 171, 288, 312, 479, 489, 581
Bme1390I	CCNGG	2 cut(s)	283, 622
Bme18I	GGWCC	1 cut(s)	596
BmeT110I	CYCGRG	1 cut(s)	556
BmgT120I	GGNCC	1 cut(s)	596
BmiI	GGNNCC	1 cut(s)	437
BmrFI	CCNGG	2 cut(s)	283, 622
BmsI	GCATC	2 cut(s)	171, 447
BoxI	GACNNNNGTC	1 cut(s)	523
Bpu1102I	GCTNAGC	1 cut(s)	392
BpuEI	CTTGAG	1 cut(s)	344
BpuMI	CCSGG	1 cut(s)	622
BsaHI	GRCGYC	1 cut(s)	296
BsaJI	CCNNGG	2 cut(s)	536, 557
Bsc4I	CCNNNNNNNGG	2 cut(s)	288, 621
Bse118I	RCCGGY	1 cut(s)	263
Bse1I	ACTGG	1 cut(s)	305
Bse3DI	GCAATG	1 cut(s)	352
BseBI	CCWGG	1 cut(s)	283
BseDI	CCNNGG	2 cut(s)	536, 557
BseGI	GGATG	3 cut(s)	231, 257, 462
BseLI	CCNNNNNNNGG	2 cut(s)	288, 621
BseMI	GCAATG	1 cut(s)	352
BseMII	CTCAG	4 cut(s)	122, 378, 383, 599
BseNI	ACTGG	1 cut(s)	305
BseRI	GAGGAG	1 cut(s)	99
BseXI	GCAGC	8 cut(s)	31, 46, 181, 298, 322, 489, 499, 591
BseYI	CCCAGC	2 cut(s)	201, 575
BsgI	GTGCAG	1 cut(s)	329
BshFI	GGCC	1 cut(s)	267
BsiHKCI	CYCGRG	1 cut(s)	556
BsiSI	CCGG	2 cut(s)	264, 622
BslFI	GGGAC	1 cut(s)	558
BslI	CCNNNNNNNGG	2 cut(s)	288, 621
BsmAI	GTCTC	2 cut(s)	119, 511
BsmBI	CGTCTC	1 cut(s)	511
BsmFI	GGGAC	1 cut(s)	558
BsnI	GGCC	1 cut(s)	267
BsoBI	CYCGRG	1 cut(s)	556
Bsp1286I	GDGCHC	1 cut(s)	622
Bsp1407I	TGTACA	1 cut(s)	426
Bsp143I	GATC	5 cut(s)	208, 244, 369, 378, 463
Bsp1720I	GCTNAGC	1 cut(s)	392
BspACI	CCGC	3 cut(s)	248, 279, 289
BspANI	GGCC	1 cut(s)	267
BspCNI	CTCAG	4 cut(s)	123, 379, 384, 598
BspLI	GGNNCC	1 cut(s)	437
BspPI	GGATC	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	352
BsrFI	RCCGGY	1 cut(s)	263
BsrGI	TGTACA	1 cut(s)	426
BsrI	ACTGG	1 cut(s)	305
BssAI	RCCGGY	1 cut(s)	263
BssECI	CCNNGG	2 cut(s)	536, 557
BssMI	GATC	5 cut(s)	208, 244, 369, 378, 463
BssNI	GRCGYC	1 cut(s)	296
BssT1I	CCWWGG	1 cut(s)	536
Bst2UI	CCWGG	1 cut(s)	283
Bst4CI	ACNGT	1 cut(s)	242
BstACI	GRCGYC	1 cut(s)	296
BstAPI	GCANNNNNTGC	1 cut(s)	152
BstAUI	TGTACA	1 cut(s)	426
BstC8I	GCNNGC	2 cut(s)	362, 398
BstDEI	CTNAG	4 cut(s)	131, 387, 392, 585
BstF5I	GGATG	3 cut(s)	231, 257, 462
BstHHI	GCGC	1 cut(s)	450
BstKTI	GATC	5 cut(s)	211, 247, 372, 381, 466
BstMAI	GTCTC	2 cut(s)	119, 511
BstMBI	GATC	5 cut(s)	208, 244, 369, 378, 463
BstMWI	GCNNNNNNNGC	4 cut(s)	152, 295, 397, 617
BstNI	CCWGG	1 cut(s)	283
BstNSI	RCATGY	1 cut(s)	494
BstPAI	GACNNNNGTC	1 cut(s)	523
BstSCI	CCNGG	2 cut(s)	281, 620
BstV1I	GCAGC	8 cut(s)	31, 46, 181, 298, 322, 489, 499, 591
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
BsuRI	GGCC	1 cut(s)	267
BtsCI	GGATG	3 cut(s)	231, 257, 462
BtsI	GCAGTG	1 cut(s)	195
BtsIMutI	CAGTG	3 cut(s)	195, 312, 384
Cac8I	GCNNGC	2 cut(s)	362, 398
CaiI	CAGNNNCTG	1 cut(s)	25
CfoI	GCGC	1 cut(s)	450
Cfr10I	RCCGGY	1 cut(s)	263
Cfr13I	GGNCC	1 cut(s)	596
CseI	GACGC	1 cut(s)	304
Csp6I	GTAC	2 cut(s)	238, 427
CviAII	CATG	2 cut(s)	491, 499
CviJI	RGCY	7 cut(s)	172, 267, 313, 391, 396, 589, 620
CviKI_1	RGCY	7 cut(s)	172, 267, 313, 391, 396, 589, 620
CviQI	GTAC	2 cut(s)	238, 427
DdeI	CTNAG	4 cut(s)	131, 387, 392, 585
DpnI	GATC	5 cut(s)	210, 246, 371, 380, 465
DpnII	GATC	5 cut(s)	208, 244, 369, 378, 463
EaeI	YGGCCR	1 cut(s)	265
Eco130I	CCWWGG	1 cut(s)	536
Eco24I	GRGCYC	1 cut(s)	622
Eco47I	GGWCC	1 cut(s)	596
Eco88I	CYCGRG	1 cut(s)	556
EcoRII	CCWGG	1 cut(s)	281
EcoT14I	CCWWGG	1 cut(s)	536
EcoT38I	GRGCYC	1 cut(s)	622
ErhI	CCWWGG	1 cut(s)	536
Esp3I	CGTCTC	1 cut(s)	511
FaeI	CATG	2 cut(s)	494, 502
FaiI	YATR	4 cut(s)	96, 153, 492, 500
FaqI	GGGAC	1 cut(s)	558
FatI	CATG	2 cut(s)	490, 498
FblI	GTMKAC	1 cut(s)	527
Fnu4HI	GCNGC	8 cut(s)	20, 35, 170, 287, 311, 478, 488, 580
FokI	GGATG	3 cut(s)	238, 244, 469
FriOI	GRGCYC	1 cut(s)	622
Fsp4HI	GCNGC	8 cut(s)	20, 35, 170, 287, 311, 478, 488, 580
FspBI	CTAG	1 cut(s)	551
GlaI	GCGC	1 cut(s)	449
GluI	GCNGC	8 cut(s)	20, 35, 170, 287, 311, 478, 488, 580
GsaI	CCCAGC	2 cut(s)	205, 579
HaeIII	GGCC	1 cut(s)	267
HapII	CCGG	2 cut(s)	264, 622
HgaI	GACGC	1 cut(s)	304
HhaI	GCGC	1 cut(s)	450
Hin1I	GRCGYC	1 cut(s)	296
Hin1II	CATG	2 cut(s)	494, 502
Hin6I	GCGC	1 cut(s)	448
HinP1I	GCGC	1 cut(s)	448
HincII	GTYRAC	1 cut(s)	528
HindII	GTYRAC	1 cut(s)	528
HinfI	GANTC	4 cut(s)	127, 219, 505, 529
HpaII	CCGG	2 cut(s)	264, 622
HphI	GGTGA	2 cut(s)	373, 524
Hpy166II	GTNNAC	3 cut(s)	294, 427, 528
Hpy188I	TCNGA	3 cut(s)	132, 415, 510
Hpy188III	TCNNGA	4 cut(s)	223, 323, 439, 615
Hpy8I	GTNNAC	3 cut(s)	294, 427, 528
HpyCH4III	ACNGT	1 cut(s)	242
HpyCH4IV	ACGT	1 cut(s)	565
HpyCH4V	TGCA	5 cut(s)	146, 184, 215, 310, 487
HpyF10VI	GCNNNNNNNGC	4 cut(s)	152, 295, 397, 617
HpyF3I	CTNAG	4 cut(s)	131, 387, 392, 585
HpySE526I	ACGT	1 cut(s)	565
Hsp92I	GRCGYC	1 cut(s)	296
Hsp92II	CATG	2 cut(s)	494, 502
HspAI	GCGC	1 cut(s)	448
Kzo9I	GATC	5 cut(s)	208, 244, 369, 378, 463
LmnI	GCTCC	1 cut(s)	318
Lsp1109I	GCAGC	8 cut(s)	31, 46, 181, 298, 322, 489, 499, 591
LweI	GCATC	2 cut(s)	171, 447
MaeI	CTAG	1 cut(s)	551
MaeII	ACGT	1 cut(s)	565
MaeIII	GTNAC	1 cut(s)	493
MalI	GATC	5 cut(s)	210, 246, 371, 380, 465
MboI	GATC	5 cut(s)	208, 244, 369, 378, 463
MboII	GAAGA	2 cut(s)	379, 613
MfeI	CAATTG	1 cut(s)	430
MflI	RGATCY	1 cut(s)	208
MhlI	GDGCHC	1 cut(s)	622
MluCI	AATT	4 cut(s)	273, 318, 408, 430
MlyI	GAGTC	3 cut(s)	121, 228, 523
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	5 cut(s)	40, 77, 126, 203, 552
MroXI	GAANNNNTTC	1 cut(s)	566
MslI	CAYNNNNRTG	1 cut(s)	455
MspA1I	CMGCKG	2 cut(s)	250, 289
MspI	CCGG	2 cut(s)	264, 622
MspR9I	CCNGG	2 cut(s)	283, 622
MunI	CAATTG	1 cut(s)	430
MvaI	CCWGG	1 cut(s)	283
MwoI	GCNNNNNNNGC	4 cut(s)	152, 295, 397, 617
NciI	CCSGG	1 cut(s)	622
NdeII	GATC	5 cut(s)	208, 244, 369, 378, 463
NlaIII	CATG	2 cut(s)	494, 502
NlaIV	GGNNCC	1 cut(s)	437
NspI	RCATGY	1 cut(s)	494
PdmI	GAANNNNTTC	1 cut(s)	566
PfeI	GAWTC	1 cut(s)	505
PkrI	GCNGC	8 cut(s)	21, 36, 171, 288, 312, 479, 489, 581
PleI	GAGTC	3 cut(s)	121, 227, 523
PpsI	GAGTC	3 cut(s)	121, 227, 523
PshAI	GACNNNNGTC	1 cut(s)	523
Psp1406I	AACGTT	1 cut(s)	565
Psp6I	CCWGG	1 cut(s)	281
PspFI	CCCAGC	2 cut(s)	201, 575
PspGI	CCWGG	1 cut(s)	281
PspN4I	GGNNCC	1 cut(s)	437
PspPI	GGNCC	1 cut(s)	596
PsrI	GAACNNNNNNTAC	2 cut(s)	419, 451
PstNI	CAGNNNCTG	1 cut(s)	25
PsuI	RGATCY	1 cut(s)	208
RsaI	GTAC	2 cut(s)	239, 428
RsaNI	GTAC	2 cut(s)	238, 427
RseI	CAYNNNNRTG	1 cut(s)	455
SalI	GTCGAC	1 cut(s)	526
SatI	GCNGC	8 cut(s)	20, 35, 170, 287, 311, 478, 488, 580
Sau3AI	GATC	5 cut(s)	208, 244, 369, 378, 463
Sau96I	GGNCC	1 cut(s)	596
SchI	GAGTC	3 cut(s)	121, 228, 523
ScrFI	CCNGG	2 cut(s)	283, 622
SduI	GDGCHC	1 cut(s)	622
SetI	ASST	6 cut(s)	174, 195, 315, 393, 568, 591
SfaNI	GCATC	2 cut(s)	171, 447
SinI	GGWCC	1 cut(s)	596
SmiMI	CAYNNNNRTG	1 cut(s)	455
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
Sse9I	AATT	4 cut(s)	273, 318, 408, 430
SsiI	CCGC	3 cut(s)	248, 279, 289
SspMI	CTAG	1 cut(s)	551
StyD4I	CCNGG	2 cut(s)	281, 620
StyI	CCWWGG	1 cut(s)	536
TaaI	ACNGT	1 cut(s)	242
TaiI	ACGT	1 cut(s)	568
TaqI	TCGA	3 cut(s)	336, 462, 527
TaqII	GACCGA	1 cut(s)	613
TasI	AATT	4 cut(s)	273, 318, 408, 430
TatI	WGTACW	2 cut(s)	237, 426
TfiI	GAWTC	1 cut(s)	505
TscAI	CASTG	3 cut(s)	202, 312, 391
TseI	GCWGC	8 cut(s)	19, 34, 169, 286, 310, 477, 487, 579
TspGWI	ACGGA	2 cut(s)	417, 535
TspRI	CASTG	3 cut(s)	202, 312, 391
VpaK11BI	GGWCC	1 cut(s)	596
XapI	RAATTY	2 cut(s)	318, 408
XceI	RCATGY	1 cut(s)	494
XmiI	GTMKAC	1 cut(s)	527
XmnI	GAANNNNTTC	1 cut(s)	566
XspI	CTAG	1 cut(s)	551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.