Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006294

Physical Location & Seq

Genomic Coordinates Reverse (-)

15365378 .. 15368264

Gene Structure 2887 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1539 bp

ATGAACCTCACGTGTTCGATAGCTCGTGGCGCCCACTCACCTACCCCGCCACACCTCTTCCTTCCTCCTTCATCGCCAACAAAATGCCCCACTTATCACACCCGACGCAGCCTCTCCTCCTCTTCCTCCATCTCCACCCGATCCGAACCCGTACCCGAGTCCATGGCCTGCACAGCATCCACAGGCAACCCATTCTCCGTTTCCCTCTCCTCCAGGAAAGCCTCATTCTCCAAGCCCAGCAGCCCGGCCGAGGTTTCTCTCCGTGTTCAGAGCTCCAACGCTTCTTCTCTCCGGACTTCGTTCGTTTCCAATAGCTCGATTGAGTTGACTCGGGGCGCGAACTCGGCGTTGAAGTCGAGCACCGTGAGATCAGGGACGGCGATTATGGCGAGCTCGGCGCAGGTAGTGGATCAGCCGTCGAGTAAAACGGGTCCAGTGGCTCCCACCGTTGTGGACGTCGATTTGGGTAATCGGAGCTACCCGATTTACATCGGATCTGGACTGCTTGATCAGCCCGAACTTCTTCAAAGGCATGTTCACGGAAAGAGGGTTCTTGTGGTCACTAACACTAAAGTTGCACCGTTGTACTTGGATAAAGTTGTTGAGGCTTTGACAAGAGATAACCCGAATGTGTCAGTTGAGAGCGTGATTTTACCAGACGGTGAGAAGTATAAGGACATGGACACTCTTATGAAAGTGTTTGACAAGGCTATTGAGTCGAGACTGGACCGGCGATGTACATTTGTTGCCCTTGGAGGTGGCGTGATTGGTGACATGTGTGGCTATGCTGCTGCTTCTTTCCTTCGTGGTGTTAACTTCATTCAGATTCCAACAACTGTTATGGCGCAGGTTGATTCTTCTGTTGGGGGCAAAACCGGTATAAACCACCCTCTTGGGAAGAACTTGATCGGTGCTTTTTACCAACCTCAGTGTGTGCTTATAGACACAGACACATTGAACACATTACCAGATAGGGAACTGGCATCAGGGCTTGCAGAGGTCATTAAGTATGGGCTTATTAGAGATGCAGATTTCTTTGAATGGCAGGAGAGGAATATTCAGGCACTAATGGCGAGGGATCCAGCGGCAATGGCTTATGCTATAAAGCGGTCGTGTGAAAACAAGGCTGAGGTTGTGTCCTTGGATGAGAAGGAAGGTGGACTGAGGGCTACACTGAACTTGGGTCATACATTTGGTCATGCAATAGAAACTGGGCTCGGCTATGGGAACTGGCTCCATGGAGAAGCTATTGCAGCTGGCATGGTTATGGCTGTTGACATGTCATACCGCCTTGGCTGGATTGATGATGCACTTGTGAAGCGAACTACCAACATTTTAAAGCAGGCCAAGTTACCTGTTGCACCTCCTGAATCTGTGACGATAGAGACATTCAGATCTGTAATGGCGGTTGATAAGAAGGTAGCTGATGGGTTACTAAGACTCATCCTTCTGAAAGGTCCTTTGGGAAATTGTGTCTTCACCGGCGAATATGATAGAAAGGCCCTCGACGAAACACTCCACGCATTTTGCGAGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003856 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016838 GO:0019632 GO:0019752 GO:0032787 GO:0033587 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0046394 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

DHQ_synthase

Protein Analysis

513

Amino Acids

55.04

Weight (kDa)

8.0

Isoelectric Point (pI)

47.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fe-ADH_2	PF13685	166 - 321	5e-09	Iron-containing alcohol dehydrogenase
DHQ_synthase	PF01761	216 - 328	2.2e-48	3-dehydroquinate synthase N-terminal
DHQS_C	PF24621	330 - 474	2.8e-51	3-dehydroquinate synthase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66120 AT5G66120
fragaria_vesca	FvH4_1g11430
malus_domestica	MD15G1242600.v1.1
prunus_persica	Prupe.7G171600_v2.0.a1
pyrus_communis	pycom02g09850 pycom15g21380
rosa_chinensis	RchiOBHm_Chr2g0099011 RchiOBHm_Chr2g0099021
rosa_laevigata	RLG00000016840
rosa_multiflora	Rmu_co8359771.1_g000001 Rmu_sc0000577.1_g000012 Rmu_sc0009422.1_g000001
rosa_roxburghii	Rroxscaffold_2G00143490 Rroxscaffold_2G00143510
rosa_rugosa	Rorug02G0075600 Rorug02G0075700
rosa_samantha	Rh2AG125000 Rh2AG125100 Rh2BG128200 Rh2BG128300 Rh2CG129200 Rh2CG129300 Rh2DG129400 Rh2DG129500
rosa_wichuraiana	Rw2G009610 Rw2G009620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	459
Acc36I	ACCTGC	2 cut(s)	391, 838
AccB1I	GGYRCC	1 cut(s)	29
AccII	CGCG	1 cut(s)	338
AccIII	TCCGGA	1 cut(s)	291
AciI	CCGC	5 cut(s)	47, 1085, 1108, 1288, 1406
AclWI	GGATC	5 cut(s)	135, 417, 502, 1073, 1086
AcoI	YGGCCR	1 cut(s)	246
AcvI	CACGTG	1 cut(s)	12
AcyI	GRCGYC	2 cut(s)	30, 456
AfaI	GTAC	3 cut(s)	153, 587, 739
AfiI	CCNNNNNNNGG	1 cut(s)	250
AflIII	ACRYGT	3 cut(s)	11, 774, 1278
AgeI	ACCGGT	1 cut(s)	875
AgsI	TTSAA	4 cut(s)	352, 527, 958, 1040
AjnI	CCWGG	1 cut(s)	212
AjuI	GAANNNNNNNTTGG	2 cut(s)	1445, 1477
AleI	CACNNNNGTG	1 cut(s)	449
AloI	GAACNNNNNNTCC	2 cut(s)	534, 566
AluBI	AGCT	8 cut(s)	23, 273, 315, 393, 477, 1247, 1256, 1424
AluI	AGCT	8 cut(s)	23, 273, 315, 393, 477, 1247, 1256, 1424
Alw21I	GWGCWC	3 cut(s)	275, 362, 395
Alw26I	GTCTC	2 cut(s)	715, 1379
AlwI	GGATC	5 cut(s)	135, 417, 502, 1073, 1086
Ama87I	CYCGRG	2 cut(s)	155, 330
Aor13HI	TCCGGA	1 cut(s)	291
AoxI	GGCC	4 cut(s)	165, 246, 1344, 1500
ApeKI	GCWGC	5 cut(s)	108, 240, 788, 791, 1253
AsiGI	ACCGGT	1 cut(s)	875
Asp700I	GAANNNNTTC	1 cut(s)	522
AspLEI	GCGC	4 cut(s)	32, 338, 400, 847
AspS9I	GGNCC	4 cut(s)	431, 727, 1457, 1501
AsuC2I	CCSGG	1 cut(s)	245
AsuHPI	GGTGA	4 cut(s)	30, 674, 782, 1471
AvaI	CYCGRG	2 cut(s)	155, 330
AvaII	GGWCC	3 cut(s)	431, 727, 1457
BamHI	GGATCC	1 cut(s)	1078
BanI	GGYRCC	1 cut(s)	29
BanII	GRGCYC	3 cut(s)	275, 395, 1218
BauI	CACGAG	1 cut(s)	24
BbrPI	CACGTG	1 cut(s)	12
BbsI	GAAGAC	1 cut(s)	1468
Bbv12I	GWGCWC	3 cut(s)	275, 362, 395
BbvCI	CCTCAGC	1 cut(s)	1128
BbvI	GCAGC	5 cut(s)	120, 252, 775, 778, 1265
BccI	CCATC	2 cut(s)	137, 1421
BceAI	ACGGC	2 cut(s)	393, 400
BciT130I	CCWGG	1 cut(s)	214
BclI	TGATCA	1 cut(s)	508
BcnI	CCSGG	1 cut(s)	245
BcoDI	GTCTC	2 cut(s)	715, 1379
BfoI	RGCGCY	1 cut(s)	33
BfuAI	ACCTGC	2 cut(s)	391, 838
BglII	AGATCT	1 cut(s)	1394
BisI	GCNGC	6 cut(s)	109, 241, 789, 792, 1086, 1254
BlsI	GCNGC	6 cut(s)	110, 242, 790, 793, 1087, 1255
Bme1390I	CCNGG	2 cut(s)	214, 245
Bme18I	GGWCC	3 cut(s)	431, 727, 1457
BmeT110I	CYCGRG	2 cut(s)	155, 330
BmgT120I	GGNCC	4 cut(s)	431, 727, 1457, 1501
BmiI	GGNNCC	5 cut(s)	31, 432, 441, 1080, 1235
BmrFI	CCNGG	2 cut(s)	214, 245
BmrI	ACTGGG	1 cut(s)	1221
BmsI	GCATC	4 cut(s)	185, 992, 1015, 1297
BmuI	ACTGGG	1 cut(s)	1221
BpiI	GAAGAC	1 cut(s)	1468
BpmI	CTGGAG	1 cut(s)	196
Bpu10I	CCTNAGC	1 cut(s)	1128
BpuMI	CCSGG	1 cut(s)	245
BsaAI	YACGTR	1 cut(s)	12
BsaBI	GATNNNNATC	1 cut(s)	488
BsaHI	GRCGYC	2 cut(s)	30, 456
BsaJI	CCNNGG	6 cut(s)	162, 249, 751, 1140, 1237, 1291
BsaWI	WCCGGW	2 cut(s)	291, 875
BsaXI	ACNNNNNCTCC	4 cut(s)	179, 209, 747, 777
Bsc4I	CCNNNNNNNGG	1 cut(s)	250
Bse118I	RCCGGY	3 cut(s)	729, 875, 1481
Bse1I	ACTGG	5 cut(s)	434, 729, 984, 1216, 1235
Bse3DI	GCAATG	1 cut(s)	1095
Bse8I	GATNNNNATC	1 cut(s)	488
BseAI	TCCGGA	1 cut(s)	291
BseBI	CCWGG	1 cut(s)	214
BseDI	CCNNGG	6 cut(s)	162, 249, 751, 1140, 1237, 1291
BseGI	GGATG	3 cut(s)	176, 1150, 1443
BseJI	GATNNNNATC	1 cut(s)	488
BseLI	CCNNNNNNNGG	1 cut(s)	250
BseMI	GCAATG	1 cut(s)	1095
BseMII	CTCAG	3 cut(s)	941, 1119, 1154
BseNI	ACTGG	5 cut(s)	434, 729, 984, 1216, 1235
BseRI	GAGGAG	3 cut(s)	106, 109, 199
BseX3I	CGGCCG	1 cut(s)	246
BseXI	GCAGC	5 cut(s)	120, 252, 775, 778, 1265
BseYI	CCCAGC	1 cut(s)	236
BsgI	GTGCAG	1 cut(s)	154
Bsh1236I	CGCG	1 cut(s)	338
Bsh1285I	CGRYCG	2 cut(s)	249, 1112
BshFI	GGCC	4 cut(s)	167, 248, 1346, 1502
BshNI	GGYRCC	1 cut(s)	29
BshTI	ACCGGT	1 cut(s)	875
BsiEI	CGRYCG	2 cut(s)	249, 1112
BsiHKAI	GWGCWC	3 cut(s)	275, 362, 395
BsiHKCI	CYCGRG	2 cut(s)	155, 330
BsiSI	CCGG	5 cut(s)	245, 292, 730, 876, 1482
BslFI	GGGAC	1 cut(s)	388
BslI	CCNNNNNNNGG	1 cut(s)	250
BsmAI	GTCTC	2 cut(s)	715, 1379
BsmFI	GGGAC	1 cut(s)	388
BsnI	GGCC	4 cut(s)	167, 248, 1346, 1502
BsoBI	CYCGRG	2 cut(s)	155, 330
Bsp1286I	GDGCHC	4 cut(s)	275, 362, 395, 1218
Bsp13I	TCCGGA	1 cut(s)	291
Bsp1407I	TGTACA	1 cut(s)	737
Bsp143I	GATC	8 cut(s)	140, 368, 409, 494, 508, 906, 1078, 1394
Bsp19I	CCATGG	2 cut(s)	162, 1237
BspACI	CCGC	5 cut(s)	47, 1085, 1108, 1288, 1406
BspANI	GGCC	4 cut(s)	167, 248, 1346, 1502
BspCNI	CTCAG	3 cut(s)	940, 1120, 1155
BspEI	TCCGGA	1 cut(s)	291
BspFNI	CGCG	1 cut(s)	338
BspLI	GGNNCC	5 cut(s)	31, 432, 441, 1080, 1235
BspMI	ACCTGC	2 cut(s)	391, 838
BspPI	GGATC	5 cut(s)	135, 417, 502, 1073, 1086
BspT107I	GGYRCC	1 cut(s)	29
BsrDI	GCAATG	1 cut(s)	1095
BsrFI	RCCGGY	3 cut(s)	729, 875, 1481
BsrGI	TGTACA	1 cut(s)	737
BsrI	ACTGG	5 cut(s)	434, 729, 984, 1216, 1235
BssAI	RCCGGY	3 cut(s)	729, 875, 1481
BssECI	CCNNGG	6 cut(s)	162, 249, 751, 1140, 1237, 1291
BssMI	GATC	8 cut(s)	140, 368, 409, 494, 508, 906, 1078, 1394
BssNI	GRCGYC	2 cut(s)	30, 456
BssSI	CACGAG	1 cut(s)	24
BssT1I	CCWWGG	5 cut(s)	162, 751, 1140, 1237, 1291
Bst2BI	CACGAG	1 cut(s)	24
Bst2UI	CCWGG	1 cut(s)	214
Bst4CI	ACNGT	5 cut(s)	364, 448, 582, 662, 838
Bst6I	CTCTTC	2 cut(s)	62, 127
BstACI	GRCGYC	2 cut(s)	30, 456
BstAUI	TGTACA	1 cut(s)	737
BstBAI	YACGTR	1 cut(s)	12
BstC8I	GCNNGC	5 cut(s)	169, 391, 993, 1258, 1344
BstDEI	CTNAG	4 cut(s)	927, 1128, 1163, 1436
BstDSI	CCRYGG	2 cut(s)	162, 1237
BstF5I	GGATG	3 cut(s)	176, 1150, 1443
BstFNI	CGCG	1 cut(s)	338
BstH2I	RGCGCY	1 cut(s)	33
BstHHI	GCGC	4 cut(s)	32, 338, 400, 847
BstKTI	GATC	8 cut(s)	143, 371, 412, 497, 511, 909, 1081, 1397
BstMAI	GTCTC	2 cut(s)	715, 1379
BstMBI	GATC	8 cut(s)	140, 368, 409, 494, 508, 906, 1078, 1394
BstMCI	CGRYCG	2 cut(s)	249, 1112
BstMWI	GCNNNNNNNGC	9 cut(s)	29, 173, 344, 386, 395, 511, 1070, 1091, 1253
BstNI	CCWGG	1 cut(s)	214
BstNSI	RCATGY	3 cut(s)	536, 778, 1282
BstSCI	CCNGG	2 cut(s)	212, 243
BstUI	CGCG	1 cut(s)	338
BstV1I	GCAGC	5 cut(s)	120, 252, 775, 778, 1265
BstV2I	GAAGAC	1 cut(s)	1468
BstX2I	RGATCY	3 cut(s)	494, 1078, 1394
BstXI	CCANNNNNNTGG	2 cut(s)	451, 893
BstYI	RGATCY	3 cut(s)	494, 1078, 1394
BstZI	CGGCCG	1 cut(s)	246
BsuRI	GGCC	4 cut(s)	167, 248, 1346, 1502
BtgI	CCRYGG	2 cut(s)	162, 1237
BtgZI	GCGATG	2 cut(s)	57, 748
BtsCI	GGATG	3 cut(s)	176, 1150, 1443
BtsIMutI	CAGTG	3 cut(s)	441, 935, 1172
BveI	ACCTGC	2 cut(s)	391, 838
Cac8I	GCNNGC	5 cut(s)	169, 391, 993, 1258, 1344
CfoI	GCGC	4 cut(s)	32, 338, 400, 847
Cfr10I	RCCGGY	3 cut(s)	729, 875, 1481
Cfr13I	GGNCC	4 cut(s)	431, 727, 1457, 1501
CseI	GACGC	1 cut(s)	114
Csp6I	GTAC	3 cut(s)	152, 586, 738
CspAI	ACCGGT	1 cut(s)	875
CspCI	CAANNNNNGTGG	1 cut(s)	1508
CviAII	CATG	8 cut(s)	163, 533, 679, 775, 1199, 1238, 1261, 1279
CviQI	GTAC	3 cut(s)	152, 586, 738
DdeI	CTNAG	4 cut(s)	927, 1128, 1163, 1436
DinI	GGCGCC	1 cut(s)	31
DpnI	GATC	8 cut(s)	142, 370, 411, 496, 510, 908, 1080, 1396
DpnII	GATC	8 cut(s)	140, 368, 409, 494, 508, 906, 1078, 1394
DraI	TTTAAA	1 cut(s)	1338
EaeI	YGGCCR	1 cut(s)	246
EagI	CGGCCG	1 cut(s)	246
Eam1104I	CTCTTC	2 cut(s)	62, 127
EarI	CTCTTC	2 cut(s)	62, 127
Ecl136II	GAGCTC	2 cut(s)	273, 393
EclXI	CGGCCG	1 cut(s)	246
Eco130I	CCWWGG	5 cut(s)	162, 751, 1140, 1237, 1291
Eco24I	GRGCYC	3 cut(s)	275, 395, 1218
Eco47I	GGWCC	3 cut(s)	431, 727, 1457
Eco52I	CGGCCG	1 cut(s)	246
Eco53kI	GAGCTC	2 cut(s)	273, 393
Eco72I	CACGTG	1 cut(s)	12
Eco88I	CYCGRG	2 cut(s)	155, 330
EcoICRI	GAGCTC	2 cut(s)	273, 393
EcoO109I	RGGNCCY	2 cut(s)	1457, 1501
EcoRII	CCWGG	1 cut(s)	212
EcoT14I	CCWWGG	5 cut(s)	162, 751, 1140, 1237, 1291
EcoT38I	GRGCYC	3 cut(s)	275, 395, 1218
EgeI	GGCGCC	1 cut(s)	31
EheI	GGCGCC	1 cut(s)	31
ErhI	CCWWGG	5 cut(s)	162, 751, 1140, 1237, 1291
FaeI	CATG	8 cut(s)	166, 536, 682, 778, 1202, 1241, 1264, 1282
FaqI	GGGAC	1 cut(s)	388
FatI	CATG	8 cut(s)	162, 532, 678, 774, 1198, 1237, 1260, 1278
FauI	CCCGC	1 cut(s)	54
FbaI	TGATCA	1 cut(s)	508
Fnu4HI	GCNGC	6 cut(s)	109, 241, 789, 792, 1086, 1254
FokI	GGATG	3 cut(s)	163, 1157, 1430
FriOI	GRGCYC	3 cut(s)	275, 395, 1218
Fsp4HI	GCNGC	6 cut(s)	109, 241, 789, 792, 1086, 1254
GlaI	GCGC	4 cut(s)	31, 337, 399, 846
GluI	GCNGC	6 cut(s)	109, 241, 789, 792, 1086, 1254
GsaI	CCCAGC	1 cut(s)	240
GsuI	CTGGAG	1 cut(s)	196
HaeII	RGCGCY	1 cut(s)	33
HaeIII	GGCC	4 cut(s)	167, 248, 1346, 1502
HapII	CCGG	5 cut(s)	245, 292, 730, 876, 1482
HgaI	GACGC	1 cut(s)	114
HhaI	GCGC	4 cut(s)	32, 338, 400, 847
Hin1I	GRCGYC	2 cut(s)	30, 456
Hin1II	CATG	8 cut(s)	166, 536, 682, 778, 1202, 1241, 1264, 1282
Hin6I	GCGC	4 cut(s)	30, 336, 398, 845
HinP1I	GCGC	4 cut(s)	30, 336, 398, 845
HincII	GTYRAC	3 cut(s)	327, 814, 1276
HindII	GTYRAC	3 cut(s)	327, 814, 1276
HinfI	GANTC	8 cut(s)	158, 328, 716, 826, 854, 1370, 1440, 1532
HpaI	GTTAAC	1 cut(s)	814
HpaII	CCGG	5 cut(s)	245, 292, 730, 876, 1482
HphI	GGTGA	4 cut(s)	30, 674, 782, 1471
Hpy166II	GTNNAC	6 cut(s)	327, 454, 538, 814, 1160, 1276
Hpy188I	TCNGA	7 cut(s)	145, 270, 474, 494, 825, 1394, 1452
Hpy188III	TCNNGA	5 cut(s)	292, 498, 720, 1367, 1536
Hpy8I	GTNNAC	6 cut(s)	327, 454, 538, 814, 1160, 1276
Hpy99I	CGWCG	4 cut(s)	108, 421, 461, 1511
HpyAV	CCTTC	7 cut(s)	71, 78, 812, 1144, 1148, 1411, 1457
HpyCH4III	ACNGT	5 cut(s)	364, 448, 582, 662, 838
HpyCH4IV	ACGT	2 cut(s)	11, 456
HpyCH4V	TGCA	8 cut(s)	171, 578, 995, 1028, 1202, 1253, 1310, 1361
HpyF10VI	GCNNNNNNNGC	9 cut(s)	29, 173, 344, 386, 395, 511, 1070, 1091, 1253
HpyF3I	CTNAG	4 cut(s)	927, 1128, 1163, 1436
HpySE526I	ACGT	2 cut(s)	11, 456
Hsp92I	GRCGYC	2 cut(s)	30, 456
Hsp92II	CATG	8 cut(s)	166, 536, 682, 778, 1202, 1241, 1264, 1282
HspAI	GCGC	4 cut(s)	30, 336, 398, 845
KasI	GGCGCC	1 cut(s)	29
Kpn2I	TCCGGA	1 cut(s)	291
Ksp22I	TGATCA	1 cut(s)	508
KspAI	GTTAAC	1 cut(s)	814
Kzo9I	GATC	8 cut(s)	140, 368, 409, 494, 508, 906, 1078, 1394
LmnI	GCTCC	4 cut(s)	278, 445, 474, 1239
Lsp1109I	GCAGC	5 cut(s)	120, 252, 775, 778, 1265
LweI	GCATC	4 cut(s)	185, 992, 1015, 1297
MaeII	ACGT	2 cut(s)	11, 456
MaeIII	GTNAC	5 cut(s)	559, 770, 1350, 1375, 1431
MalI	GATC	8 cut(s)	142, 370, 411, 496, 510, 908, 1080, 1396
MboI	GATC	8 cut(s)	140, 368, 409, 494, 508, 906, 1078, 1394
MboII	GAAGA	7 cut(s)	49, 114, 276, 515, 849, 910, 1468
MflI	RGATCY	3 cut(s)	494, 1078, 1394
MhlI	GDGCHC	4 cut(s)	275, 362, 395, 1218
MluCI	AATT	1 cut(s)	1468
Mly113I	GGCGCC	1 cut(s)	30
MlyI	GAGTC	4 cut(s)	167, 322, 725, 1434
MmeI	TCCRAC	2 cut(s)	300, 854
MroI	TCCGGA	1 cut(s)	291
MroXI	GAANNNNTTC	1 cut(s)	522
MseI	TTAA	3 cut(s)	813, 1005, 1337
MslI	CAYNNNNRTG	3 cut(s)	449, 689, 1265
MspA1I	CMGCKG	2 cut(s)	1085, 1256
MspI	CCGG	5 cut(s)	245, 292, 730, 876, 1482
MspR9I	CCNGG	2 cut(s)	214, 245
MvaI	CCWGG	1 cut(s)	214
MvnI	CGCG	1 cut(s)	338
MwoI	GCNNNNNNNGC	9 cut(s)	29, 173, 344, 386, 395, 511, 1070, 1091, 1253
NarI	GGCGCC	1 cut(s)	30
NciI	CCSGG	1 cut(s)	245
NcoI	CCATGG	2 cut(s)	162, 1237
NdeII	GATC	8 cut(s)	140, 368, 409, 494, 508, 906, 1078, 1394
NlaIII	CATG	8 cut(s)	166, 536, 682, 778, 1202, 1241, 1264, 1282
NlaIV	GGNNCC	5 cut(s)	31, 432, 441, 1080, 1235
NmeAIII	GCCGAG	4 cut(s)	274, 323, 374, 1197
NmuCI	GTSAC	3 cut(s)	559, 770, 1375
NspI	RCATGY	3 cut(s)	536, 778, 1282
OliI	CACNNNNGTG	1 cut(s)	449
PciI	ACATGT	2 cut(s)	774, 1278
PcsI	WCGNNNNNNNCGW	1 cut(s)	1527
PdmI	GAANNNNTTC	1 cut(s)	522
PfeI	GAWTC	3 cut(s)	826, 854, 1370
PfoI	TCCNGGA	1 cut(s)	212
PinAI	ACCGGT	1 cut(s)	875
PkrI	GCNGC	6 cut(s)	110, 242, 790, 793, 1087, 1255
PleI	GAGTC	4 cut(s)	166, 322, 724, 1434
PluTI	GGCGCC	1 cut(s)	33
PmaCI	CACGTG	1 cut(s)	12
PmlI	CACGTG	1 cut(s)	12
PpsI	GAGTC	4 cut(s)	166, 322, 724, 1434
Ppu21I	YACGTR	1 cut(s)	12
PpuMI	RGGWCCY	1 cut(s)	1457
PscI	ACATGT	2 cut(s)	774, 1278
Psp124BI	GAGCTC	2 cut(s)	275, 395
Psp5II	RGGWCCY	1 cut(s)	1457
Psp6I	CCWGG	1 cut(s)	212
PspCI	CACGTG	1 cut(s)	12
PspFI	CCCAGC	1 cut(s)	236
PspGI	CCWGG	1 cut(s)	212
PspN4I	GGNNCC	5 cut(s)	31, 432, 441, 1080, 1235
PspPI	GGNCC	4 cut(s)	431, 727, 1457, 1501
PspPPI	RGGWCCY	1 cut(s)	1457
PsuI	RGATCY	3 cut(s)	494, 1078, 1394
PvuII	CAGCTG	1 cut(s)	1256
RsaI	GTAC	3 cut(s)	153, 587, 739
RsaNI	GTAC	3 cut(s)	152, 586, 738
RseI	CAYNNNNRTG	3 cut(s)	449, 689, 1265
SacI	GAGCTC	2 cut(s)	275, 395
SaqAI	TTAA	3 cut(s)	813, 1005, 1337
SatI	GCNGC	6 cut(s)	109, 241, 789, 792, 1086, 1254
Sau3AI	GATC	8 cut(s)	140, 368, 409, 494, 508, 906, 1078, 1394
Sau96I	GGNCC	4 cut(s)	431, 727, 1457, 1501
SchI	GAGTC	4 cut(s)	167, 322, 725, 1434
ScrFI	CCNGG	2 cut(s)	214, 245
SduI	GDGCHC	4 cut(s)	275, 362, 395, 1218
SfaNI	GCATC	4 cut(s)	185, 992, 1015, 1297
SfoI	GGCGCC	1 cut(s)	31
SgrAI	CRCCGGYG	1 cut(s)	1481
SinI	GGWCC	3 cut(s)	431, 727, 1457
SmiMI	CAYNNNNRTG	3 cut(s)	449, 689, 1265
Sse9I	AATT	1 cut(s)	1468
SsiI	CCGC	5 cut(s)	47, 1085, 1108, 1288, 1406
SspDI	GGCGCC	1 cut(s)	29
SspI	AATATT	1 cut(s)	1057
SstI	GAGCTC	2 cut(s)	275, 395
StyD4I	CCNGG	2 cut(s)	212, 243
StyI	CCWWGG	5 cut(s)	162, 751, 1140, 1237, 1291
TaaI	ACNGT	5 cut(s)	364, 448, 582, 662, 838
TaiI	ACGT	2 cut(s)	14, 459
TaqI	TCGA	7 cut(s)	17, 317, 356, 419, 459, 719, 1506
TasI	AATT	1 cut(s)	1468
TatI	WGTACW	2 cut(s)	585, 737
TauI	GCSGC	1 cut(s)	1088
TfiI	GAWTC	3 cut(s)	826, 854, 1370
Tru1I	TTAA	3 cut(s)	813, 1005, 1337
Tru9I	TTAA	3 cut(s)	813, 1005, 1337
TscAI	CASTG	3 cut(s)	441, 935, 1179
TseFI	GTSAC	3 cut(s)	559, 770, 1375
TseI	GCWGC	5 cut(s)	108, 240, 788, 791, 1253
Tsp45I	GTSAC	3 cut(s)	559, 770, 1375
TspDTI	ATGAA	4 cut(s)	17, 60, 707, 808
TspGWI	ACGGA	3 cut(s)	187, 251, 555
TspRI	CASTG	3 cut(s)	441, 935, 1179
VpaK11BI	GGWCC	3 cut(s)	431, 727, 1457
XceI	RCATGY	3 cut(s)	536, 778, 1282
XmnI	GAANNNNTTC	1 cut(s)	522
ZraI	GACGTC	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.