pycom15g34020

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0001890
Physical Location & Seq
Reverse (-)
33620198 .. 33622282
2085 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 711 bp
ATGCGAAGCTCAAGCTTCCTCGGCCTGCTTCGGAGGCGGCTGGTGTCGTCAGTGGCGGCAGAATTGCCCATTGATCAAGCAGATTGGACCCGGAGCCTCTCCTCGCTCAGTGAGGCATTTTATCGAACACCTGGTTCGAGCTCCGGCGGGTCGGTGGCTGGCTTGGCTAGCGCATTGGGAATTCGTTATTTCCATGCCTCAGGGTTTTGCCGAGCAGCTGAACGAGATTATTATGAGACTCTTGGTGTTTCGAAAAATGCAAGCCGAGATGAGATTAAAAAAGCATTTCGCACGCTTGCCAAGAAATACCATCCAGATGCAAATAGGGACAATCCTTCTTCTAAAAGAAAATTTCAAGACATAAGAGATGCCTATGAGACTTTGCAAGATCCTGAAAAGAGGGCACAATATGACAGGAAGCGTTCAAGTGGGTCAGAAAACGTAGGATATACAGCTGGAGGTGCAGACGGTTTTAGGTATAAGAATCAGAGTCACAGTACTGCTGGTGCAGAGGGGTTTAGATATGGTTTTGAAACTAATTTTTCCAGTTCATTCCATAAAATATTCCAAGAGATCTTTGAACATGAGTTTGATCAAGTTGGATCAAATATCCAGGTGGAGTTGTCACTTTCTTTCTCTGAAGCTGTTAAAGGATGCACAAAGCATCTCTCTGTCAATTCATACGTTCCCTGCGATTCTTGCCGTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

237

Amino Acids

26.32

Weight (kDa)

8.81

Isoelectric Point (pI)

47.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 76 - 138 1.4e-26 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 37, 56, 147
AclWI GGATC 2 cut(s) 383, 610
AcsI RAATTY 2 cut(s) 180, 350
AcuI CTGAAG 1 cut(s) 660
AfaI GTAC 1 cut(s) 499
AgsI TTSAA 4 cut(s) 356, 426, 533, 581
AjnI CCWGG 2 cut(s) 130, 612
AluBI AGCT 6 cut(s) 9, 15, 141, 218, 455, 644
AluI AGCT 6 cut(s) 9, 15, 141, 218, 455, 644
Alw21I GWGCWC 1 cut(s) 143
Alw26I GTCTC 2 cut(s) 230, 371
AlwI GGATC 2 cut(s) 383, 610
AoxI GGCC 1 cut(s) 22
ApeKI GCWGC 1 cut(s) 215
ApoI RAATTY 2 cut(s) 180, 350
AspLEI GCGC 1 cut(s) 173
AspS9I GGNCC 1 cut(s) 87
AsuC2I CCSGG 1 cut(s) 91
AsuII TTCGAA 1 cut(s) 251
AsuNHI GCTAGC 1 cut(s) 167
AvaII GGWCC 1 cut(s) 87
AxyI CCTNAGG 1 cut(s) 199
BaeGI GKGCMC 1 cut(s) 406
BanII GRGCYC 1 cut(s) 143
Bbv12I GWGCWC 1 cut(s) 143
BbvI GCAGC 1 cut(s) 227
BccI CCATC 1 cut(s) 318
BceAI ACGGC 1 cut(s) 687
BciT130I CCWGG 2 cut(s) 132, 614
BclI TGATCA 2 cut(s) 73, 592
BcnI CCSGG 1 cut(s) 91
BcoDI GTCTC 2 cut(s) 230, 371
BfaI CTAG 1 cut(s) 168
BglII AGATCT 1 cut(s) 573
BisI GCNGC 3 cut(s) 38, 57, 216
BlsI GCNGC 3 cut(s) 39, 58, 217
BmcAI AGTACT 1 cut(s) 499
Bme1390I CCNGG 3 cut(s) 91, 132, 614
Bme18I GGWCC 1 cut(s) 87
BmgT120I GGNCC 1 cut(s) 87
BmiI GGNNCC 2 cut(s) 89, 95
BmrFI CCNGG 3 cut(s) 91, 132, 614
BmsI GCATC 4 cut(s) 307, 358, 644, 673
BmtI GCTAGC 1 cut(s) 171
BpmI CTGGAG 1 cut(s) 477
Bpu14I TTCGAA 1 cut(s) 251
BpuMI CCSGG 1 cut(s) 91
BsaJI CCNNGG 1 cut(s) 19
Bse1I ACTGG 1 cut(s) 546
Bse21I CCTNAGG 1 cut(s) 199
BseBI CCWGG 2 cut(s) 132, 614
BseDI CCNNGG 1 cut(s) 19
BseGI GGATG 2 cut(s) 310, 659
BseMII CTCAG 2 cut(s) 121, 213
BseNI ACTGG 1 cut(s) 546
BseRI GAGGAG 1 cut(s) 91
BseSI GKGCMC 1 cut(s) 406
BseXI GCAGC 1 cut(s) 227
BsgI GTGCAG 2 cut(s) 483, 528
BshFI GGCC 1 cut(s) 24
BsiHKAI GWGCWC 1 cut(s) 143
BsiSI CCGG 2 cut(s) 91, 144
BslFI GGGAC 1 cut(s) 341
BsmAI GTCTC 2 cut(s) 230, 371
BsmFI GGGAC 1 cut(s) 341
BsnI GGCC 1 cut(s) 24
Bsp119I TTCGAA 1 cut(s) 251
Bsp1286I GDGCHC 2 cut(s) 143, 406
Bsp143I GATC 5 cut(s) 73, 388, 573, 592, 602
BspACI CCGC 3 cut(s) 37, 56, 147
BspANI GGCC 1 cut(s) 24
BspCNI CTCAG 2 cut(s) 120, 212
BspLI GGNNCC 2 cut(s) 89, 95
BspOI GCTAGC 1 cut(s) 171
BspPI GGATC 2 cut(s) 383, 610
BspT104I TTCGAA 1 cut(s) 251
BsrI ACTGG 1 cut(s) 546
BssECI CCNNGG 1 cut(s) 19
BssMI GATC 5 cut(s) 73, 388, 573, 592, 602
Bst2UI CCWGG 2 cut(s) 132, 614
Bst4CI ACNGT 2 cut(s) 470, 497
BstBI TTCGAA 1 cut(s) 251
BstC8I GCNNGC 6 cut(s) 26, 160, 169, 262, 293, 297
BstDEI CTNAG 2 cut(s) 107, 199
BstF5I GGATG 2 cut(s) 310, 659
BstHHI GCGC 1 cut(s) 173
BstKTI GATC 5 cut(s) 76, 391, 576, 595, 605
BstMAI GTCTC 2 cut(s) 230, 371
BstMBI GATC 5 cut(s) 73, 388, 573, 592, 602
BstMWI GCNNNNNNNGC 6 cut(s) 21, 34, 164, 168, 461, 699
BstNI CCWGG 2 cut(s) 132, 614
BstSCI CCNGG 3 cut(s) 89, 130, 612
BstSLI GKGCMC 1 cut(s) 406
BstV1I GCAGC 1 cut(s) 227
BstX2I RGATCY 2 cut(s) 388, 573
BstYI RGATCY 2 cut(s) 388, 573
Bsu36I CCTNAGG 1 cut(s) 199
BsuRI GGCC 1 cut(s) 24
BtsCI GGATG 2 cut(s) 310, 659
BtsIMutI CAGTG 2 cut(s) 57, 115
Cac8I GCNNGC 6 cut(s) 26, 160, 169, 262, 293, 297
CfoI GCGC 1 cut(s) 173
Cfr13I GGNCC 1 cut(s) 87
CsiI ACCWGGT 1 cut(s) 130
Csp6I GTAC 1 cut(s) 498
CviAII CATG 2 cut(s) 194, 584
CviQI GTAC 1 cut(s) 498
DdeI CTNAG 2 cut(s) 107, 199
DpnI GATC 5 cut(s) 75, 390, 575, 594, 604
DpnII GATC 5 cut(s) 73, 388, 573, 592, 602
Ecl136II GAGCTC 1 cut(s) 141
Eco24I GRGCYC 1 cut(s) 143
Eco47I GGWCC 1 cut(s) 87
Eco53kI GAGCTC 1 cut(s) 141
Eco57I CTGAAG 1 cut(s) 660
Eco81I CCTNAGG 1 cut(s) 199
EcoICRI GAGCTC 1 cut(s) 141
EcoRI GAATTC 1 cut(s) 180
EcoRII CCWGG 2 cut(s) 130, 612
EcoT38I GRGCYC 1 cut(s) 143
FaeI CATG 2 cut(s) 197, 587
FaqI GGGAC 1 cut(s) 341
FatI CATG 2 cut(s) 193, 583
FauI CCCGC 1 cut(s) 140
FbaI TGATCA 2 cut(s) 73, 592
Fnu4HI GCNGC 3 cut(s) 38, 57, 216
FokI GGATG 2 cut(s) 297, 666
FriOI GRGCYC 1 cut(s) 143
Fsp4HI GCNGC 3 cut(s) 38, 57, 216
FspBI CTAG 1 cut(s) 168
GlaI GCGC 1 cut(s) 172
GluI GCNGC 3 cut(s) 38, 57, 216
GsuI CTGGAG 1 cut(s) 477
HaeIII GGCC 1 cut(s) 24
HapII CCGG 2 cut(s) 91, 144
HhaI GCGC 1 cut(s) 173
Hin1II CATG 2 cut(s) 197, 587
Hin6I GCGC 1 cut(s) 171
HinP1I GCGC 1 cut(s) 171
HindIII AAGCTT 1 cut(s) 13
HinfI GANTC 4 cut(s) 238, 484, 490, 695
HpaII CCGG 2 cut(s) 91, 144
Hpy188I TCNGA 4 cut(s) 33, 436, 489, 640
Hpy188III TCNNGA 3 cut(s) 314, 356, 392
HpyAV CCTTC 1 cut(s) 345
HpyCH4III ACNGT 2 cut(s) 470, 497
HpyCH4IV ACGT 2 cut(s) 441, 684
HpyCH4V TGCA 6 cut(s) 260, 320, 385, 464, 509, 657
HpyF10VI GCNNNNNNNGC 6 cut(s) 21, 34, 164, 168, 461, 699
HpyF3I CTNAG 2 cut(s) 107, 199
HpySE526I ACGT 2 cut(s) 441, 684
Hsp92II CATG 2 cut(s) 197, 587
HspAI GCGC 1 cut(s) 171
Ksp22I TGATCA 2 cut(s) 73, 592
Kzo9I GATC 5 cut(s) 73, 388, 573, 592, 602
LmnI GCTCC 2 cut(s) 93, 146
Lsp1109I GCAGC 1 cut(s) 227
LweI GCATC 4 cut(s) 307, 358, 644, 673
MabI ACCWGGT 1 cut(s) 130
MaeI CTAG 1 cut(s) 168
MaeII ACGT 2 cut(s) 441, 684
MaeIII GTNAC 2 cut(s) 491, 624
MalI GATC 5 cut(s) 75, 390, 575, 594, 604
MboI GATC 5 cut(s) 73, 388, 573, 592, 602
MboII GAAGA 1 cut(s) 330
MflI RGATCY 2 cut(s) 388, 573
MhlI GDGCHC 2 cut(s) 143, 406
MluCI AATT 5 cut(s) 62, 180, 350, 538, 676
MlyI GAGTC 2 cut(s) 232, 499
MmeI TCCRAC 1 cut(s) 580
MnlI CCTC 9 cut(s) 27, 29, 106, 107, 112, 208, 393, 452, 505
MseI TTAA 2 cut(s) 276, 648
MslI CAYNNNNRTG 1 cut(s) 315
MspA1I CMGCKG 2 cut(s) 218, 455
MspI CCGG 2 cut(s) 91, 144
MspR9I CCNGG 3 cut(s) 91, 132, 614
MvaI CCWGG 2 cut(s) 132, 614
MwoI GCNNNNNNNGC 6 cut(s) 21, 34, 164, 168, 461, 699
NciI CCSGG 1 cut(s) 91
NdeII GATC 5 cut(s) 73, 388, 573, 592, 602
NheI GCTAGC 1 cut(s) 167
NlaIII CATG 2 cut(s) 197, 587
NlaIV GGNNCC 2 cut(s) 89, 95
NmeAIII GCCGAG 2 cut(s) 236, 290
NmuCI GTSAC 2 cut(s) 491, 624
NspV TTCGAA 1 cut(s) 251
PcsI WCGNNNNNNNCGW 1 cut(s) 690
PfeI GAWTC 2 cut(s) 484, 695
PkrI GCNGC 3 cut(s) 39, 58, 217
PleI GAGTC 2 cut(s) 232, 498
PpsI GAGTC 2 cut(s) 232, 498
Psp124BI GAGCTC 1 cut(s) 143
Psp6I CCWGG 2 cut(s) 130, 612
PspGI CCWGG 2 cut(s) 130, 612
PspN4I GGNNCC 2 cut(s) 89, 95
PspPI GGNCC 1 cut(s) 87
PsuI RGATCY 2 cut(s) 388, 573
PvuII CAGCTG 2 cut(s) 218, 455
RsaI GTAC 1 cut(s) 499
RsaNI GTAC 1 cut(s) 498
RseI CAYNNNNRTG 1 cut(s) 315
SacI GAGCTC 1 cut(s) 143
SaqAI TTAA 2 cut(s) 276, 648
SatI GCNGC 3 cut(s) 38, 57, 216
Sau3AI GATC 5 cut(s) 73, 388, 573, 592, 602
Sau96I GGNCC 1 cut(s) 87
ScaI AGTACT 1 cut(s) 499
SchI GAGTC 2 cut(s) 232, 499
ScrFI CCNGG 3 cut(s) 91, 132, 614
SduI GDGCHC 2 cut(s) 143, 406
SexAI ACCWGGT 1 cut(s) 130
SfaNI GCATC 4 cut(s) 307, 358, 644, 673
SfuI TTCGAA 1 cut(s) 251
SinI GGWCC 1 cut(s) 87
SmiMI CAYNNNNRTG 1 cut(s) 315
SmlI CTYRAG 1 cut(s) 10
SmoI CTYRAG 1 cut(s) 10
Sse9I AATT 5 cut(s) 62, 180, 350, 538, 676
SsiI CCGC 3 cut(s) 37, 56, 147
SspI AATATT 1 cut(s) 564
SspMI CTAG 1 cut(s) 168
SstI GAGCTC 1 cut(s) 143
StyD4I CCNGG 3 cut(s) 89, 130, 612
TaaI ACNGT 2 cut(s) 470, 497
TaiI ACGT 2 cut(s) 444, 687
TaqI TCGA 3 cut(s) 124, 137, 251
TasI AATT 5 cut(s) 62, 180, 350, 538, 676
TatI WGTACW 1 cut(s) 497
TauI GCSGC 2 cut(s) 40, 59
TfiI GAWTC 2 cut(s) 484, 695
Tru1I TTAA 2 cut(s) 276, 648
Tru9I TTAA 2 cut(s) 276, 648
TscAI CASTG 2 cut(s) 57, 115
TseFI GTSAC 2 cut(s) 491, 624
TseI GCWGC 1 cut(s) 215
Tsp45I GTSAC 2 cut(s) 491, 624
TspDTI ATGAA 2 cut(s) 540, 669
TspRI CASTG 2 cut(s) 57, 115
VpaK11BI GGWCC 1 cut(s) 87
XapI RAATTY 2 cut(s) 180, 350
XspI CTAG 1 cut(s) 168
ZrmI AGTACT 1 cut(s) 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.