pycom16g09700

Ankyrin repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0002610
Physical Location & Seq
Reverse (-)
6499917 .. 6500198
282 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g09700.1

Sequence Viewer

Length: 282 bp
ATGCTGAAAATGGTGGGGGCTGCCGGGATTTTGCAGTGGGGGAAGTCGAGCAAGAGAAATGTGATTTGTAGGAGGGCGGAAGTCGGGCCTAGTGACTCGTTCAGATGGAACCGCCGGAGGAAATTCGACACGGACGAGCCCGGGCTGTTCCATGCGGTAACTACAAAGCAGAAGGAGCTGCATTTTGTGTGTGAAGTTGGGATTGAAATGGCTGAGCTGTGGGTGAGAGGGATCAAGCTTTTATCATATTTTAGAAAAAAACCGGGGTTTAATAAAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_3 Ank_4

Protein Analysis

94

Amino Acids

10.81

Weight (kDa)

10.09

Isoelectric Point (pI)

55.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 77, 112, 155
AclWI GGATC 1 cut(s) 239
AcsI RAATTY 1 cut(s) 122
AgsI TTSAA 1 cut(s) 206
AluBI AGCT 3 cut(s) 178, 217, 238
AluI AGCT 3 cut(s) 178, 217, 238
AlwI GGATC 1 cut(s) 239
Ama87I CYCGRG 1 cut(s) 140
AoxI GGCC 1 cut(s) 86
ApeKI GCWGC 2 cut(s) 20, 178
ApoI RAATTY 1 cut(s) 122
AspS9I GGNCC 1 cut(s) 86
AsuC2I CCSGG 4 cut(s) 25, 141, 142, 264
AsuHPI GGTGA 1 cut(s) 235
AvaI CYCGRG 1 cut(s) 140
BanII GRGCYC 1 cut(s) 141
BbvI GCAGC 2 cut(s) 7, 165
BccI CCATC 1 cut(s) 99
BcnI CCSGG 4 cut(s) 25, 141, 142, 264
BfaI CTAG 1 cut(s) 90
BisI GCNGC 2 cut(s) 21, 179
BlpI GCTNAGC 1 cut(s) 213
BlsI GCNGC 2 cut(s) 22, 180
Bme1390I CCNGG 4 cut(s) 25, 141, 142, 264
BmeT110I CYCGRG 1 cut(s) 140
BmgT120I GGNCC 1 cut(s) 86
BmiI GGNNCC 1 cut(s) 110
BmrFI CCNGG 4 cut(s) 25, 141, 142, 264
Bpu1102I GCTNAGC 1 cut(s) 213
BpuMI CCSGG 4 cut(s) 25, 141, 142, 264
BsaJI CCNNGG 2 cut(s) 140, 263
BseDI CCNNGG 2 cut(s) 140, 263
BseMII CTCAG 1 cut(s) 204
BseXI GCAGC 2 cut(s) 7, 165
BshFI GGCC 1 cut(s) 88
BsiHKCI CYCGRG 1 cut(s) 140
BsiSI CCGG 4 cut(s) 24, 115, 141, 263
BsnI GGCC 1 cut(s) 88
BsoBI CYCGRG 1 cut(s) 140
Bsp1286I GDGCHC 1 cut(s) 141
Bsp143I GATC 1 cut(s) 231
Bsp1720I GCTNAGC 1 cut(s) 213
BspACI CCGC 3 cut(s) 77, 112, 155
BspANI GGCC 1 cut(s) 88
BspCNI CTCAG 1 cut(s) 205
BspLI GGNNCC 1 cut(s) 110
BspPI GGATC 1 cut(s) 239
BssECI CCNNGG 2 cut(s) 140, 263
BssMI GATC 1 cut(s) 231
BstDEI CTNAG 1 cut(s) 213
BstKTI GATC 1 cut(s) 234
BstMBI GATC 1 cut(s) 231
BstMWI GCNNNNNNNGC 1 cut(s) 175
BstSCI CCNGG 4 cut(s) 23, 139, 140, 262
BstV1I GCAGC 2 cut(s) 7, 165
BsuRI GGCC 1 cut(s) 88
BtsI GCAGTG 1 cut(s) 41
BtsIMutI CAGTG 1 cut(s) 41
Cfr13I GGNCC 1 cut(s) 86
Cfr9I CCCGGG 1 cut(s) 140
CviAII CATG 1 cut(s) 152
CviJI RGCY 8 cut(s) 20, 88, 139, 145, 178, 212, 217, 238
CviKI_1 RGCY 8 cut(s) 20, 88, 139, 145, 178, 212, 217, 238
DdeI CTNAG 1 cut(s) 213
DpnI GATC 1 cut(s) 233
DpnII GATC 1 cut(s) 231
EciI GGCGGA 1 cut(s) 92
Eco24I GRGCYC 1 cut(s) 141
Eco88I CYCGRG 1 cut(s) 140
EcoT38I GRGCYC 1 cut(s) 141
FaeI CATG 1 cut(s) 155
FaiI YATR 2 cut(s) 153, 247
FatI CATG 1 cut(s) 151
Fnu4HI GCNGC 2 cut(s) 21, 179
FriOI GRGCYC 1 cut(s) 141
Fsp4HI GCNGC 2 cut(s) 21, 179
FspBI CTAG 1 cut(s) 90
GluI GCNGC 2 cut(s) 21, 179
HaeIII GGCC 1 cut(s) 88
HapII CCGG 4 cut(s) 24, 115, 141, 263
Hin1II CATG 1 cut(s) 155
HindIII AAGCTT 1 cut(s) 236
HinfI GANTC 1 cut(s) 95
HpaII CCGG 4 cut(s) 24, 115, 141, 263
HphI GGTGA 1 cut(s) 235
Hpy188I TCNGA 1 cut(s) 104
HpyAV CCTTC 1 cut(s) 166
HpyCH4V TGCA 2 cut(s) 34, 181
HpyF10VI GCNNNNNNNGC 1 cut(s) 175
HpyF3I CTNAG 1 cut(s) 213
Hsp92II CATG 1 cut(s) 155
Kzo9I GATC 1 cut(s) 231
LmnI GCTCC 1 cut(s) 175
LpnPI CCDG 4 cut(s) 37, 128, 154, 276
Lsp1109I GCAGC 2 cut(s) 7, 165
MaeI CTAG 1 cut(s) 90
MaeIII GTNAC 2 cut(s) 92, 157
MalI GATC 1 cut(s) 233
MboI GATC 1 cut(s) 231
MhlI GDGCHC 1 cut(s) 141
MluCI AATT 1 cut(s) 122
MlyI GAGTC 1 cut(s) 89
MnlI CCTC 3 cut(s) 66, 111, 221
MseI TTAA 1 cut(s) 270
MspI CCGG 4 cut(s) 24, 115, 141, 263
MspR9I CCNGG 4 cut(s) 25, 141, 142, 264
MwoI GCNNNNNNNGC 1 cut(s) 175
NciI CCSGG 4 cut(s) 25, 141, 142, 264
NdeII GATC 1 cut(s) 231
NlaIII CATG 1 cut(s) 155
NlaIV GGNNCC 1 cut(s) 110
NmuCI GTSAC 1 cut(s) 92
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PkrI GCNGC 2 cut(s) 22, 180
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
PspN4I GGNNCC 1 cut(s) 110
PspPI GGNCC 1 cut(s) 86
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 2 cut(s) 21, 179
Sau3AI GATC 1 cut(s) 231
Sau96I GGNCC 1 cut(s) 86
SchI GAGTC 1 cut(s) 89
ScrFI CCNGG 4 cut(s) 25, 141, 142, 264
SduI GDGCHC 1 cut(s) 141
SetI ASST 3 cut(s) 180, 219, 240
SmaI CCCGGG 1 cut(s) 142
SrfI GCCCGGGC 1 cut(s) 142
Sse9I AATT 1 cut(s) 122
SsiI CCGC 3 cut(s) 77, 112, 155
SspMI CTAG 1 cut(s) 90
StyD4I CCNGG 4 cut(s) 23, 139, 140, 262
TaqI TCGA 2 cut(s) 47, 126
TasI AATT 1 cut(s) 122
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TscAI CASTG 1 cut(s) 41
TseFI GTSAC 1 cut(s) 92
TseI GCWGC 2 cut(s) 20, 178
Tsp45I GTSAC 1 cut(s) 92
TspGWI ACGGA 1 cut(s) 146
TspMI CCCGGG 1 cut(s) 140
TspRI CASTG 1 cut(s) 41
XapI RAATTY 1 cut(s) 122
XmaI CCCGGG 1 cut(s) 140
XspI CTAG 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.