pycom17g01190

Ankyrin repeats (many copies)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0002610
Physical Location & Seq
Forward (+)
837898 .. 839704
1807 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g01190.2

Sequence Viewer

Length: 486 bp
ATGCGAGCTCTCATTCGAGTTTGCAGCACCAGAGAAGAAGACCGCCACTCTCCAAGCTCAAATTCCGCGACGTGTTCGCCGGAAATGGTATTCTCCGGCAAACAGGTGTTCCCGGTGGACTACGAGGCCGAGGTTTCGCAGCGACTGCTCGAAGCCTCGCTCTCCGGCGATCTGAAATCGGCGCTGGAGTGCGTCGCCGATCCGTTCGTGGACGTTAACTTCGTCGGCGCTGTGCTCCTCAAAACGAGGAAGTGTGAGTTGTTGCTGCGCGACGAGTCGCCGAGCGAAGTCCGCGTCGACTACGAGGAGTTCAAAACCGACGTCACGGCTCTGTTCCTCGCCGTTCATACCGGAAACGTCGTTTTGGTGAAGAAATTACTGAGCATTGGTGCTGATGTAAATCAGAAACTCTTCAGGGGCTTCGCGACAACAGCAGCAGTGAGAGAGGGCCACCTTGAGATTCTACCGCCGCCGAGATCCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000278 GO:0000281 GO:0000902 GO:0000904 GO:0000910 GO:0001508 GO:0002028 GO:0003008 GO:0003254 GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005829 GO:0005856 GO:0005886 GO:0005911 GO:0006810 GO:0006888 GO:0006892 GO:0006893 GO:0006996 GO:0007009 GO:0007010 GO:0007016 GO:0007049 GO:0007154 GO:0007275 GO:0007399 GO:0007409 GO:0007528 GO:0008092 GO:0008104 GO:0008150 GO:0009653 GO:0009893 GO:0009986 GO:0009987 GO:0010035 GO:0010038 GO:0010256 GO:0010468 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0010649 GO:0010650 GO:0010765 GO:0010959 GO:0010960 GO:0012505 GO:0014704 GO:0014731 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016323 GO:0016328 GO:0016528 GO:0016529 GO:0019222 GO:0019226 GO:0019228 GO:0022008 GO:0022402 GO:0022407 GO:0022409 GO:0022607 GO:0022898 GO:0023052 GO:0030016 GO:0030017 GO:0030018 GO:0030030 GO:0030054 GO:0030154 GO:0030155 GO:0030182 GO:0030315 GO:0030424 GO:0030425 GO:0030507 GO:0030674 GO:0031175 GO:0031594 GO:0031674 GO:0032026 GO:0032386 GO:0032388 GO:0032409 GO:0032410 GO:0032411 GO:0032412 GO:0032413 GO:0032414 GO:0032501 GO:0032502 GO:0032507 GO:0032879 GO:0032880 GO:0032989 GO:0032990 GO:0033036 GO:0033157 GO:0033267 GO:0033268 GO:0034110 GO:0034112 GO:0034613 GO:0034762 GO:0034763 GO:0034764 GO:0034765 GO:0034766 GO:0034767 GO:0035637 GO:0036477 GO:0042221 GO:0042383 GO:0042391 GO:0042592 GO:0042886 GO:0042995 GO:0043001 GO:0043005 GO:0043034 GO:0043194 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043266 GO:0043267 GO:0043269 GO:0043270 GO:0043271 GO:0043292 GO:0044085 GO:0044091 GO:0044092 GO:0044093 GO:0044291 GO:0044304 GO:0044325 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044449 GO:0044456 GO:0044459 GO:0044463 GO:0044464 GO:0045184 GO:0045185 GO:0045202 GO:0045211 GO:0045296 GO:0045760 GO:0045785 GO:0045838 GO:0046907 GO:0048193 GO:0048468 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050808 GO:0050839 GO:0050877 GO:0050896 GO:0051049 GO:0051050 GO:0051051 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051235 GO:0051301 GO:0051641 GO:0051649 GO:0051651 GO:0051716 GO:0055065 GO:0055080 GO:0060090 GO:0060255 GO:0060341 GO:0061024 GO:0061564 GO:0061640 GO:0061951 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0070727 GO:0070887 GO:0071241 GO:0071248 GO:0071286 GO:0071702 GO:0071705 GO:0071709 GO:0071840 GO:0071944 GO:0072507 GO:0072657 GO:0072658 GO:0072659 GO:0072660 GO:0090087 GO:0090150 GO:0090313 GO:0090314 GO:0090316 GO:0097060 GO:0097447 GO:0097458 GO:0098590 GO:0098771 GO:0098794 GO:0098876 GO:0098900 GO:0098901 GO:0098902 GO:0099080 GO:0099081 GO:0099512 GO:0120025 GO:0120036 GO:0120038 GO:0120039 GO:1900825 GO:1900827 GO:1901016 GO:1901017 GO:1901379 GO:1901380 GO:1902259 GO:1902260 GO:1902305 GO:1902307 GO:1903047 GO:1903533 GO:1903817 GO:1903827 GO:1903829 GO:1904062 GO:1904063 GO:1904064 GO:1904181 GO:1904951 GO:1905475 GO:1905477 GO:1990778 GO:2000649 GO:2000651 GO:2001257 GO:2001258 GO:2001259
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_3 Ank_5

Protein Analysis

162

Amino Acids

17.79

Weight (kDa)

5.43

Isoelectric Point (pI)

34.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 324
AccI GTMKAC 1 cut(s) 297
AccII CGCG 4 cut(s) 68, 270, 294, 425
AciI CCGC 5 cut(s) 43, 66, 292, 467, 470
AclWI GGATC 2 cut(s) 194, 471
AcsI RAATTY 1 cut(s) 61
AcuI CTGAAG 1 cut(s) 397
AcyI GRCGYC 1 cut(s) 321
AflIII ACRYGT 1 cut(s) 71
AgsI TTSAA 1 cut(s) 313
AjiI CACGTC 1 cut(s) 72
AjuI GAANNNNNNNTTGG 2 cut(s) 46, 78
AluBI AGCT 2 cut(s) 8, 57
AluI AGCT 2 cut(s) 8, 57
Alw21I GWGCWC 2 cut(s) 10, 237
AlwI GGATC 2 cut(s) 194, 471
AlwNI CAGNNNCTG 1 cut(s) 145
AoxI GGCC 2 cut(s) 126, 448
ApeKI GCWGC 4 cut(s) 24, 139, 265, 434
ApoI RAATTY 1 cut(s) 61
ArsI GACNNNNNNTTYG 6 cut(s) 203, 235, 279, 306, 311, 338
Asp700I GAANNNNTTC 1 cut(s) 410
AspLEI GCGC 3 cut(s) 184, 230, 270
AspS9I GGNCC 1 cut(s) 448
AsuC2I CCSGG 1 cut(s) 113
AsuHPI GGTGA 1 cut(s) 379
BanII GRGCYC 1 cut(s) 10
BbsI GAAGAC 1 cut(s) 45
Bbv12I GWGCWC 2 cut(s) 10, 237
BbvI GCAGC 4 cut(s) 36, 151, 252, 446
BceAI ACGGC 2 cut(s) 326, 342
BcnI CCSGG 1 cut(s) 113
BfoI RGCGCY 2 cut(s) 185, 231
BisI GCNGC 5 cut(s) 25, 140, 266, 435, 470
BlsI GCNGC 5 cut(s) 26, 141, 267, 436, 471
Bme1390I CCNGG 1 cut(s) 113
BmgBI CACGTC 1 cut(s) 72
BmgT120I GGNCC 1 cut(s) 448
BmrFI CCNGG 1 cut(s) 113
BpiI GAAGAC 1 cut(s) 45
BpmI CTGGAG 1 cut(s) 206
BpuEI CTTGAG 1 cut(s) 476
BpuMI CCSGG 1 cut(s) 113
BsaBI GATNNNNATC 1 cut(s) 399
BsaHI GRCGYC 1 cut(s) 321
BsaJI CCNNGG 1 cut(s) 129
BsaWI WCCGGW 1 cut(s) 350
Bse8I GATNNNNATC 1 cut(s) 399
BseDI CCNNGG 1 cut(s) 129
BseJI GATNNNNATC 1 cut(s) 399
BseMII CTCAG 1 cut(s) 371
BseRI GAGGAG 2 cut(s) 227, 320
BseXI GCAGC 4 cut(s) 36, 151, 252, 446
Bsh1236I CGCG 4 cut(s) 68, 270, 294, 425
BshFI GGCC 2 cut(s) 128, 450
BsiHKAI GWGCWC 2 cut(s) 10, 237
BsiSI CCGG 5 cut(s) 80, 96, 113, 165, 351
BsnI GGCC 2 cut(s) 128, 450
Bsp1286I GDGCHC 2 cut(s) 10, 237
Bsp143I GATC 3 cut(s) 169, 199, 476
Bsp68I TCGCGA 1 cut(s) 425
BspACI CCGC 5 cut(s) 43, 66, 292, 467, 470
BspANI GGCC 2 cut(s) 128, 450
BspCNI CTCAG 1 cut(s) 372
BspFNI CGCG 4 cut(s) 68, 270, 294, 425
BspPI GGATC 2 cut(s) 194, 471
BssECI CCNNGG 1 cut(s) 129
BssMI GATC 3 cut(s) 169, 199, 476
BssNI GRCGYC 1 cut(s) 321
Bst6I CTCTTC 1 cut(s) 416
BstACI GRCGYC 1 cut(s) 321
BstAPI GCANNNNNTGC 1 cut(s) 145
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 380
BstFNI CGCG 4 cut(s) 68, 270, 294, 425
BstH2I RGCGCY 2 cut(s) 185, 231
BstHHI GCGC 3 cut(s) 184, 230, 270
BstKTI GATC 3 cut(s) 172, 202, 479
BstMBI GATC 3 cut(s) 169, 199, 476
BstMWI GCNNNNNNNGC 3 cut(s) 145, 291, 431
BstSCI CCNGG 1 cut(s) 111
BstUI CGCG 4 cut(s) 68, 270, 294, 425
BstV1I GCAGC 4 cut(s) 36, 151, 252, 446
BstV2I GAAGAC 1 cut(s) 45
BstX2I RGATCY 1 cut(s) 476
BstYI RGATCY 1 cut(s) 476
BsuRI GGCC 2 cut(s) 128, 450
BtrI CACGTC 1 cut(s) 72
BtsI GCAGTG 1 cut(s) 444
BtsIMutI CAGTG 1 cut(s) 444
BtuMI TCGCGA 1 cut(s) 425
Cac8I GCNNGC 1 cut(s) 6
CaiI CAGNNNCTG 1 cut(s) 145
CfoI GCGC 3 cut(s) 184, 230, 270
Cfr13I GGNCC 1 cut(s) 448
CseI GACGC 2 cut(s) 181, 283
CviJI RGCY 7 cut(s) 8, 57, 128, 155, 329, 420, 450
CviKI_1 RGCY 7 cut(s) 8, 57, 128, 155, 329, 420, 450
DdeI CTNAG 1 cut(s) 380
DpnI GATC 3 cut(s) 171, 201, 478
DpnII GATC 3 cut(s) 169, 199, 476
Eam1104I CTCTTC 1 cut(s) 416
EarI CTCTTC 1 cut(s) 416
Ecl136II GAGCTC 1 cut(s) 8
Eco24I GRGCYC 1 cut(s) 10
Eco53kI GAGCTC 1 cut(s) 8
Eco57I CTGAAG 1 cut(s) 397
EcoICRI GAGCTC 1 cut(s) 8
EcoT38I GRGCYC 1 cut(s) 10
FaiI YATR 1 cut(s) 348
FblI GTMKAC 1 cut(s) 297
Fnu4HI GCNGC 5 cut(s) 25, 140, 266, 435, 470
FriOI GRGCYC 1 cut(s) 10
Fsp4HI GCNGC 5 cut(s) 25, 140, 266, 435, 470
GlaI GCGC 3 cut(s) 183, 229, 269
GluI GCNGC 5 cut(s) 25, 140, 266, 435, 470
GsuI CTGGAG 1 cut(s) 206
HaeII RGCGCY 2 cut(s) 185, 231
HaeIII GGCC 2 cut(s) 128, 450
HapII CCGG 5 cut(s) 80, 96, 113, 165, 351
HgaI GACGC 2 cut(s) 181, 283
HhaI GCGC 3 cut(s) 184, 230, 270
Hin1I GRCGYC 1 cut(s) 321
Hin6I GCGC 3 cut(s) 182, 228, 268
HinP1I GCGC 3 cut(s) 182, 228, 268
HincII GTYRAC 2 cut(s) 217, 298
HindII GTYRAC 2 cut(s) 217, 298
HinfI GANTC 2 cut(s) 275, 460
HpaI GTTAAC 1 cut(s) 217
HpaII CCGG 5 cut(s) 80, 96, 113, 165, 351
HphI GGTGA 1 cut(s) 379
Hpy166II GTNNAC 4 cut(s) 118, 211, 217, 298
Hpy188I TCNGA 2 cut(s) 174, 405
Hpy188III TCNNGA 1 cut(s) 424
Hpy8I GTNNAC 4 cut(s) 118, 211, 217, 298
Hpy99I CGWCG 7 cut(s) 73, 197, 227, 275, 299, 323, 362
HpyCH4IV ACGT 4 cut(s) 71, 213, 321, 357
HpyCH4V TGCA 1 cut(s) 24
HpyF10VI GCNNNNNNNGC 3 cut(s) 145, 291, 431
HpyF3I CTNAG 1 cut(s) 380
HpySE526I ACGT 4 cut(s) 71, 213, 321, 357
Hsp92I GRCGYC 1 cut(s) 321
HspAI GCGC 3 cut(s) 182, 228, 268
KspAI GTTAAC 1 cut(s) 217
Kzo9I GATC 3 cut(s) 169, 199, 476
LmnI GCTCC 1 cut(s) 240
LpnPI CCDG 9 cut(s) 43, 89, 93, 109, 126, 170, 178, 364, 400
Lsp1109I GCAGC 4 cut(s) 36, 151, 252, 446
MaeII ACGT 4 cut(s) 71, 213, 321, 357
MaeIII GTNAC 1 cut(s) 322
MalI GATC 3 cut(s) 171, 201, 478
MboI GATC 3 cut(s) 169, 199, 476
MboII GAAGA 4 cut(s) 47, 50, 382, 403
MflI RGATCY 1 cut(s) 476
MhlI GDGCHC 2 cut(s) 10, 237
MluCI AATT 2 cut(s) 61, 374
MlyI GAGTC 1 cut(s) 284
MnlI CCTC 8 cut(s) 118, 124, 166, 240, 248, 298, 347, 439
MroXI GAANNNNTTC 1 cut(s) 410
MseI TTAA 1 cut(s) 216
MspI CCGG 5 cut(s) 80, 96, 113, 165, 351
MspR9I CCNGG 1 cut(s) 113
MvnI CGCG 4 cut(s) 68, 270, 294, 425
MwoI GCNNNNNNNGC 3 cut(s) 145, 291, 431
NciI CCSGG 1 cut(s) 113
NdeII GATC 3 cut(s) 169, 199, 476
NmeAIII GCCGAG 2 cut(s) 154, 306
NmuCI GTSAC 1 cut(s) 322
NruI TCGCGA 1 cut(s) 425
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PdmI GAANNNNTTC 1 cut(s) 410
PfeI GAWTC 1 cut(s) 460
PkrI GCNGC 5 cut(s) 26, 141, 267, 436, 471
PleI GAGTC 1 cut(s) 283
PpsI GAGTC 1 cut(s) 283
Psp124BI GAGCTC 1 cut(s) 10
PspPI GGNCC 1 cut(s) 448
PstNI CAGNNNCTG 1 cut(s) 145
PsuI RGATCY 1 cut(s) 476
RruI TCGCGA 1 cut(s) 425
SacI GAGCTC 1 cut(s) 10
SalI GTCGAC 1 cut(s) 296
SaqAI TTAA 1 cut(s) 216
SatI GCNGC 5 cut(s) 25, 140, 266, 435, 470
Sau3AI GATC 3 cut(s) 169, 199, 476
Sau96I GGNCC 1 cut(s) 448
SchI GAGTC 1 cut(s) 284
ScrFI CCNGG 1 cut(s) 113
SduI GDGCHC 2 cut(s) 10, 237
SetI ASST 9 cut(s) 10, 59, 74, 108, 135, 216, 324, 360, 456
SmlI CTYRAG 1 cut(s) 455
SmoI CTYRAG 1 cut(s) 455
Sse9I AATT 2 cut(s) 61, 374
SsiI CCGC 5 cut(s) 43, 66, 292, 467, 470
SstI GAGCTC 1 cut(s) 10
StyD4I CCNGG 1 cut(s) 111
TaiI ACGT 4 cut(s) 74, 216, 324, 360
TaqI TCGA 3 cut(s) 16, 150, 297
TasI AATT 2 cut(s) 61, 374
TauI GCSGC 1 cut(s) 472
TfiI GAWTC 1 cut(s) 460
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TscAI CASTG 1 cut(s) 444
TseFI GTSAC 1 cut(s) 322
TseI GCWGC 4 cut(s) 24, 139, 265, 434
Tsp45I GTSAC 1 cut(s) 322
TspDTI ATGAA 1 cut(s) 335
TspGWI ACGGA 1 cut(s) 192
TspRI CASTG 1 cut(s) 444
XapI RAATTY 1 cut(s) 61
XmiI GTMKAC 1 cut(s) 297
XmnI GAANNNNTTC 1 cut(s) 410
ZraI GACGTC 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.