Rorug02G0580100

Ankyrin repeats (many copies)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002610
Physical Location & Seq
Forward (+)
70367946 .. 70368575
630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0580100.1

Sequence Viewer

Length: 630 bp
ATGGAACCACAAACCCAGCAACTAACCGTGGATGGAGGAAGCAACAAAGCAGCCGGGAGTAGTGCTAACATGCTTTGTAGGCAGAGCAGGTGGACTCCCACTACAGATCATATAAGAATCCTCAATGAGCTTTTCTACAACAAGGGAGTTAGGTCCCCAACTATAGAGCAGGTTCAGAGGATCTGTCTCCAGCTGAAATGGTACGGCAAGATCGAGTTCAAGAACGTCTATTATTGGTTCGTGAACCAAAGGTCTCGAGAGAAGCAGAAGAAAAGGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGGTGATGACAAAGTTACCAATTGGAAACATGAGGATCAGTATATTAACTTTGGATCTTCTGCACCTGCTTCTTCTTCCGCTGGTGTGATGATTGCTTTTAACGGGCAGATGGGGAACTATGGCGATTATGGATCTATGAACATGGAGATTGAAACCCTTCCTCTGTTTCCCATGCATGGTGAGGACATCTTTGGCAACATGAAGACTACTTCCGATGGAGGTGGCGGTCACGGTGGTGGCTCTTACATTTCCCTTGAGCTCGGCCTTTCCTGCGAGGGCAAAGCTGGAAAAAGTTTCTGGAGCCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000278 GO:0000281 GO:0000902 GO:0000904 GO:0000910 GO:0001508 GO:0002028 GO:0003008 GO:0003254 GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005829 GO:0005856 GO:0005886 GO:0005911 GO:0006810 GO:0006888 GO:0006892 GO:0006893 GO:0006996 GO:0007009 GO:0007010 GO:0007016 GO:0007049 GO:0007154 GO:0007275 GO:0007399 GO:0007409 GO:0007528 GO:0008092 GO:0008104 GO:0008150 GO:0009653 GO:0009893 GO:0009986 GO:0009987 GO:0010035 GO:0010038 GO:0010256 GO:0010468 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0010649 GO:0010650 GO:0010765 GO:0010959 GO:0010960 GO:0012505 GO:0014704 GO:0014731 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016323 GO:0016328 GO:0016528 GO:0016529 GO:0019222 GO:0019226 GO:0019228 GO:0022008 GO:0022402 GO:0022407 GO:0022409 GO:0022607 GO:0022898 GO:0023052 GO:0030016 GO:0030017 GO:0030018 GO:0030030 GO:0030054 GO:0030154 GO:0030155 GO:0030182 GO:0030315 GO:0030424 GO:0030425 GO:0030507 GO:0030674 GO:0031175 GO:0031594 GO:0031674 GO:0032026 GO:0032386 GO:0032388 GO:0032409 GO:0032410 GO:0032411 GO:0032412 GO:0032413 GO:0032414 GO:0032501 GO:0032502 GO:0032507 GO:0032879 GO:0032880 GO:0032989 GO:0032990 GO:0033036 GO:0033157 GO:0033267 GO:0033268 GO:0034110 GO:0034112 GO:0034613 GO:0034762 GO:0034763 GO:0034764 GO:0034765 GO:0034766 GO:0034767 GO:0035637 GO:0036477 GO:0042221 GO:0042383 GO:0042391 GO:0042592 GO:0042886 GO:0042995 GO:0043001 GO:0043005 GO:0043034 GO:0043194 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043266 GO:0043267 GO:0043269 GO:0043270 GO:0043271 GO:0043292 GO:0044085 GO:0044091 GO:0044092 GO:0044093 GO:0044291 GO:0044304 GO:0044325 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044449 GO:0044456 GO:0044459 GO:0044463 GO:0044464 GO:0045184 GO:0045185 GO:0045202 GO:0045211 GO:0045296 GO:0045760 GO:0045785 GO:0045838 GO:0046907 GO:0048193 GO:0048468 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050808 GO:0050839 GO:0050877 GO:0050896 GO:0051049 GO:0051050 GO:0051051 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051235 GO:0051301 GO:0051641 GO:0051649 GO:0051651 GO:0051716 GO:0055065 GO:0055080 GO:0060090 GO:0060255 GO:0060341 GO:0061024 GO:0061564 GO:0061640 GO:0061951 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0070727 GO:0070887 GO:0071241 GO:0071248 GO:0071286 GO:0071702 GO:0071705 GO:0071709 GO:0071840 GO:0071944 GO:0072507 GO:0072657 GO:0072658 GO:0072659 GO:0072660 GO:0090087 GO:0090150 GO:0090313 GO:0090314 GO:0090316 GO:0097060 GO:0097447 GO:0097458 GO:0098590 GO:0098771 GO:0098794 GO:0098876 GO:0098900 GO:0098901 GO:0098902 GO:0099080 GO:0099081 GO:0099512 GO:0120025 GO:0120036 GO:0120038 GO:0120039 GO:1900825 GO:1900827 GO:1901016 GO:1901017 GO:1901379 GO:1901380 GO:1902259 GO:1902260 GO:1902305 GO:1902307 GO:1903047 GO:1903533 GO:1903817 GO:1903827 GO:1903829 GO:1904062 GO:1904063 GO:1904064 GO:1904181 GO:1904951 GO:1905475 GO:1905477 GO:1990778 GO:2000649 GO:2000651 GO:2001257 GO:2001258 GO:2001259
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_3

Protein Analysis

209

Amino Acids

23.29

Weight (kDa)

8.71

Isoelectric Point (pI)

54.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 27 - 89 5.8e-08 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 78, 394
Acc36I ACCTGC 3 cut(s) 78, 160, 394
AciI CCGC 3 cut(s) 399, 546, 625
AclWI GGATC 4 cut(s) 188, 363, 382, 460
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 1 cut(s) 497
AgsI TTSAA 2 cut(s) 220, 473
AleI CACNNNNGTG 1 cut(s) 555
AluBI AGCT 4 cut(s) 130, 193, 580, 605
AluI AGCT 4 cut(s) 130, 193, 580, 605
Alw21I GWGCWC 1 cut(s) 582
Alw26I GTCTC 2 cut(s) 191, 258
AlwI GGATC 4 cut(s) 188, 363, 382, 460
Ama87I CYCGRG 1 cut(s) 255
AoxI GGCC 1 cut(s) 583
ApeKI GCWGC 1 cut(s) 50
Asp700I GAANNNNTTC 1 cut(s) 477
AspS9I GGNCC 2 cut(s) 153, 276
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 2 cut(s) 335, 512
AvaI CYCGRG 1 cut(s) 255
AvaII GGWCC 2 cut(s) 153, 276
BaeGI GKGCMC 1 cut(s) 300
BanII GRGCYC 1 cut(s) 582
BbsI GAAGAC 1 cut(s) 530
Bbv12I GWGCWC 1 cut(s) 582
BbvI GCAGC 1 cut(s) 62
BccI CCATC 3 cut(s) 26, 424, 530
BceAI ACGGC 1 cut(s) 220
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 2 cut(s) 191, 258
BfmI CTRYAG 2 cut(s) 102, 162
BfuAI ACCTGC 3 cut(s) 78, 160, 394
BisI GCNGC 2 cut(s) 51, 625
BlsI GCNGC 2 cut(s) 52, 626
Bme1390I CCNGG 1 cut(s) 55
Bme18I GGWCC 2 cut(s) 153, 276
BmeT110I CYCGRG 1 cut(s) 255
BmgT120I GGNCC 2 cut(s) 153, 276
BmiI GGNNCC 3 cut(s) 6, 155, 623
BmrFI CCNGG 1 cut(s) 55
BpiI GAAGAC 1 cut(s) 530
BpmI CTGGAG 1 cut(s) 173
BpuEI CTTGAG 1 cut(s) 596
BpuMI CCSGG 1 cut(s) 55
BsaI GGTCTC 1 cut(s) 258
BsaJI CCNNGG 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 497
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 2 cut(s) 37, 292
BseLI CCNNNNNNNGG 1 cut(s) 497
BseSI GKGCMC 1 cut(s) 300
BseXI GCAGC 1 cut(s) 62
BseYI CCCAGC 1 cut(s) 15
BsgI GTGCAG 1 cut(s) 366
BshFI GGCC 1 cut(s) 585
BsiHKAI GWGCWC 1 cut(s) 582
BsiHKCI CYCGRG 1 cut(s) 255
BsiSI CCGG 1 cut(s) 54
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 1 cut(s) 497
BsmAI GTCTC 2 cut(s) 191, 258
BsmFI GGGAC 1 cut(s) 139
BsnI GGCC 1 cut(s) 585
Bso31I GGTCTC 1 cut(s) 258
BsoBI CYCGRG 1 cut(s) 255
Bsp1286I GDGCHC 2 cut(s) 300, 582
Bsp143I GATC 7 cut(s) 106, 180, 210, 308, 355, 374, 452
BspACI CCGC 3 cut(s) 399, 546, 625
BspANI GGCC 1 cut(s) 585
BspLI GGNNCC 3 cut(s) 6, 155, 623
BspMI ACCTGC 3 cut(s) 78, 160, 394
BspPI GGATC 4 cut(s) 188, 363, 382, 460
BspTNI GGTCTC 1 cut(s) 258
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 7 cut(s) 106, 180, 210, 308, 355, 374, 452
Bst4CI ACNGT 2 cut(s) 28, 554
BstDSI CCRYGG 1 cut(s) 27
BstF5I GGATG 2 cut(s) 37, 292
BstKTI GATC 7 cut(s) 109, 183, 213, 311, 358, 377, 455
BstMAI GTCTC 2 cut(s) 191, 258
BstMBI GATC 7 cut(s) 106, 180, 210, 308, 355, 374, 452
BstMWI GCNNNNNNNGC 2 cut(s) 79, 591
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 1 cut(s) 53
BstSFI CTRYAG 2 cut(s) 102, 162
BstSLI GKGCMC 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 62
BstV2I GAAGAC 1 cut(s) 530
BstX2I RGATCY 3 cut(s) 180, 374, 452
BstYI RGATCY 3 cut(s) 180, 374, 452
BsuRI GGCC 1 cut(s) 585
BtgI CCRYGG 1 cut(s) 27
BtsCI GGATG 2 cut(s) 37, 292
BveI ACCTGC 3 cut(s) 78, 160, 394
Cfr13I GGNCC 2 cut(s) 153, 276
Csp6I GTAC 1 cut(s) 202
CviAII CATG 8 cut(s) 70, 293, 301, 350, 463, 493, 497, 520
CviJI RGCY 9 cut(s) 53, 130, 193, 316, 561, 580, 585, 605, 624
CviKI_1 RGCY 9 cut(s) 53, 130, 193, 316, 561, 580, 585, 605, 624
CviQI GTAC 1 cut(s) 202
DpnI GATC 7 cut(s) 108, 182, 212, 310, 357, 376, 454
DpnII GATC 7 cut(s) 106, 180, 210, 308, 355, 374, 452
Ecl136II GAGCTC 1 cut(s) 580
Eco24I GRGCYC 1 cut(s) 582
Eco31I GGTCTC 1 cut(s) 258
Eco47I GGWCC 2 cut(s) 153, 276
Eco53kI GAGCTC 1 cut(s) 580
Eco88I CYCGRG 1 cut(s) 255
EcoICRI GAGCTC 1 cut(s) 580
EcoO109I RGGNCCY 1 cut(s) 153
EcoT22I ATGCAT 1 cut(s) 498
EcoT38I GRGCYC 1 cut(s) 582
FaeI CATG 8 cut(s) 73, 296, 304, 353, 466, 496, 500, 523
FalI AAGNNNNNCTT 2 cut(s) 265, 297
FaqI GGGAC 1 cut(s) 139
FatI CATG 8 cut(s) 69, 292, 300, 349, 462, 492, 496, 519
Fnu4HI GCNGC 2 cut(s) 51, 625
FokI GGATG 2 cut(s) 44, 299
FriOI GRGCYC 1 cut(s) 582
Fsp4HI GCNGC 2 cut(s) 51, 625
GluI GCNGC 2 cut(s) 51, 625
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 173
HaeIII GGCC 1 cut(s) 585
HapII CCGG 1 cut(s) 54
Hin1II CATG 8 cut(s) 73, 296, 304, 353, 466, 496, 500, 523
HinfI GANTC 2 cut(s) 94, 117
HpaII CCGG 1 cut(s) 54
HphI GGTGA 2 cut(s) 335, 512
Hpy166II GTNNAC 3 cut(s) 93, 244, 279
Hpy188I TCNGA 3 cut(s) 177, 286, 535
Hpy188III TCNNGA 5 cut(s) 220, 241, 255, 257, 619
Hpy8I GTNNAC 3 cut(s) 93, 244, 279
HpyAV CCTTC 1 cut(s) 488
HpyCH4III ACNGT 2 cut(s) 28, 554
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 3 cut(s) 304, 383, 496
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 591
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 8 cut(s) 73, 296, 304, 353, 466, 496, 500, 523
Kzo9I GATC 7 cut(s) 106, 180, 210, 308, 355, 374, 452
LmnI GCTCC 1 cut(s) 621
Lsp1109I GCAGC 1 cut(s) 62
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 2 cut(s) 334, 548
MalI GATC 7 cut(s) 108, 182, 212, 310, 357, 376, 454
MboI GATC 7 cut(s) 106, 180, 210, 308, 355, 374, 452
MboII GAAGA 5 cut(s) 280, 369, 384, 387, 535
MfeI CAATTG 1 cut(s) 340
MflI RGATCY 3 cut(s) 180, 374, 452
MhlI GDGCHC 2 cut(s) 300, 582
MluCI AATT 1 cut(s) 340
MlyI GAGTC 1 cut(s) 88
MnlI CCTC 8 cut(s) 29, 131, 171, 346, 492, 496, 533, 589
Mph1103I ATGCAT 1 cut(s) 498
MroXI GAANNNNTTC 1 cut(s) 477
MseI TTAA 2 cut(s) 366, 420
MslI CAYNNNNRTG 1 cut(s) 555
MspA1I CMGCKG 3 cut(s) 193, 401, 627
MspI CCGG 1 cut(s) 54
MspR9I CCNGG 1 cut(s) 55
MunI CAATTG 1 cut(s) 340
MwoI GCNNNNNNNGC 2 cut(s) 79, 591
NciI CCSGG 1 cut(s) 55
NdeII GATC 7 cut(s) 106, 180, 210, 308, 355, 374, 452
NlaIII CATG 8 cut(s) 73, 296, 304, 353, 466, 496, 500, 523
NlaIV GGNNCC 3 cut(s) 6, 155, 623
NmeAIII GCCGAG 1 cut(s) 561
NmuCI GTSAC 1 cut(s) 548
NsiI ATGCAT 1 cut(s) 498
NspI RCATGY 1 cut(s) 73
OliI CACNNNNGTG 1 cut(s) 555
PaeR7I CTCGAG 1 cut(s) 255
PaqCI CACCTGC 2 cut(s) 78, 394
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 477
PfeI GAWTC 1 cut(s) 117
PkrI GCNGC 2 cut(s) 52, 626
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
PpuMI RGGWCCY 1 cut(s) 153
Psp124BI GAGCTC 1 cut(s) 582
Psp5II RGGWCCY 1 cut(s) 153
PspFI CCCAGC 1 cut(s) 15
PspN4I GGNNCC 3 cut(s) 6, 155, 623
PspPI GGNCC 2 cut(s) 153, 276
PspPPI RGGWCCY 1 cut(s) 153
PsuI RGATCY 3 cut(s) 180, 374, 452
PvuII CAGCTG 1 cut(s) 193
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
RseI CAYNNNNRTG 1 cut(s) 555
SacI GAGCTC 1 cut(s) 582
SaqAI TTAA 2 cut(s) 366, 420
SatI GCNGC 2 cut(s) 51, 625
Sau3AI GATC 7 cut(s) 106, 180, 210, 308, 355, 374, 452
Sau96I GGNCC 2 cut(s) 153, 276
SchI GAGTC 1 cut(s) 88
ScrFI CCNGG 1 cut(s) 55
SduI GDGCHC 2 cut(s) 300, 582
SfcI CTRYAG 2 cut(s) 102, 162
Sfr274I CTCGAG 1 cut(s) 255
SinI GGWCC 2 cut(s) 153, 276
SlaI CTCGAG 1 cut(s) 255
SmiMI CAYNNNNRTG 1 cut(s) 555
SmlI CTYRAG 2 cut(s) 255, 575
SmoI CTYRAG 2 cut(s) 255, 575
Sse9I AATT 1 cut(s) 340
SsiI CCGC 3 cut(s) 399, 546, 625
SstI GAGCTC 1 cut(s) 582
StyD4I CCNGG 1 cut(s) 53
TaaI ACNGT 2 cut(s) 28, 554
TaiI ACGT 1 cut(s) 228
TaqI TCGA 2 cut(s) 213, 256
TasI AATT 1 cut(s) 340
TauI GCSGC 1 cut(s) 627
TfiI GAWTC 1 cut(s) 117
Tru1I TTAA 2 cut(s) 366, 420
Tru9I TTAA 2 cut(s) 366, 420
TseFI GTSAC 1 cut(s) 548
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 548
TspDTI ATGAA 3 cut(s) 281, 473, 536
VpaK11BI GGWCC 2 cut(s) 153, 276
XceI RCATGY 1 cut(s) 73
XhoI CTCGAG 1 cut(s) 255
XmnI GAANNNNTTC 1 cut(s) 477
Zsp2I ATGCAT 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.