Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0002610

Physical Location & Seq

Genomic Coordinates Reverse (-)

6581968 .. 6582855

Gene Structure 888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g09730.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGTTTGTGACTCAAGCAAACAATGTTGAGGCTTTGAAGAAACTGATTGAGGGGGAAGACGTCGATCTCAATGAGCAAGATGAAAAGGGATGCTCAGCTGCCATGATAGCTGCAGCTATCAAATTGCTTATCTACGCTGGGGCAGTACAACACAATGTCACAGATTTCGTTCATACATTGATAGGCAGGGGTTCTGATGTGAATGCTTCTGATGCCGATGGATACACTCCGTTGATGTTAGCAGCAAGAGAAGGCCACGCTACGCTGTGCGAGCTTTTGACTTCTTTAGGGGAAAAATGCGACATTGTGCAGGACACGAGACAGCACTCTTGCTTGCAAGGAAAAGTGAAGTCAGGTAAAGAAGCACATAAAAATGCGGTAGAGGATCTCCACATCAAAAAAATGCTGAAAATGGTGGAGGCTGCCAGGATTTTGCAGTGGGGGAAGTCGAGCAAGAGAAATGTGATTTGTAGGAGGGCGGAAGTCGGGGCTAGTGACTCGTTCAGATGGAATCGCCGGAGGAAATTCGACACGGACGAGCCCGGGCTGTTCCATGCGGTAACTACAAAGCAGAAGGAGCTGCATTTTGTGTGTGAAGTTGGGATTGAAATAGCTGAGCTGTGGGTGAGAGGGATCAAGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_3 Ank_4

Protein Analysis

215

Amino Acids

23.76

Weight (kDa)

7.08

Isoelectric Point (pI)

38.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002610)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14230 AT5G14230
fragaria_vesca	FvH4_4g24120 FvH4_6g53080
malus_domestica	MD09G1014800.v1.1 MD13G1115300.v1.1 MD17G1014900.v1.1
prunus_persica	Prupe.1G232000_v2.0.a1 Prupe.1G232000_v2.0.a1 Prupe.3G302900_v2.0.a1
pyrus_communis	pycom111g01210 pycom13g09980 pycom16g09700 pycom16g09730 pycom16g09770 pycom17g01190 pycom17g01200
rosa_chinensis	RchiOBHm_Chr2g0174861 RchiOBHm_Chr4g0430901
rosa_laevigata	RLG00000006940 RLG00000022302
rosa_multiflora	Rmu_sc0006263.1_g000010 Rmu_sc0009766.1_g000002 Rmu_sc0036631.1_g000001
rosa_roxburghii	Rroxscaffold_2G00077630 Rroxscaffold_5G00372590
rosa_rugosa	Rorug02G0580100 Rorug02G0580200 Rorug04G0247300
rosa_samantha	Rh2AG661200 Rh2BG672600 Rh2CG635400 Rh2DG685700 Rh4AG302700 Rh4AG303600 Rh4BG310800 Rh4CG327200 Rh4DG307000
rosa_wichuraiana	Rw2G054190 Rw4G026310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	63
AciI	CCGC	3 cut(s)	377, 479, 557
AclWI	GGATC	2 cut(s)	393, 641
AcsI	RAATTY	1 cut(s)	524
AcyI	GRCGYC	1 cut(s)	60
AfaI	GTAC	1 cut(s)	147
AgsI	TTSAA	2 cut(s)	37, 608
AjnI	CCWGG	1 cut(s)	425
AluBI	AGCT	7 cut(s)	98, 110, 116, 274, 580, 614, 619
AluI	AGCT	7 cut(s)	98, 110, 116, 274, 580, 614, 619
Alw26I	GTCTC	1 cut(s)	313
AlwI	GGATC	2 cut(s)	393, 641
Ama87I	CYCGRG	1 cut(s)	542
AoxI	GGCC	1 cut(s)	253
ApeKI	GCWGC	6 cut(s)	98, 110, 113, 242, 422, 580
ApoI	RAATTY	1 cut(s)	524
AsuC2I	CCSGG	2 cut(s)	543, 544
AsuHPI	GGTGA	1 cut(s)	637
AvaI	CYCGRG	1 cut(s)	542
BanII	GRGCYC	1 cut(s)	543
BauI	CACGAG	1 cut(s)	316
BbsI	GAAGAC	1 cut(s)	63
BbvI	GCAGC	6 cut(s)	85, 97, 125, 254, 409, 567
BccI	CCATC	2 cut(s)	212, 501
BciT130I	CCWGG	1 cut(s)	427
BciVI	GTATCC	1 cut(s)	215
BcnI	CCSGG	2 cut(s)	543, 544
BcoDI	GTCTC	1 cut(s)	313
BfaI	CTAG	1 cut(s)	492
BfmI	CTRYAG	1 cut(s)	111
BfuI	GTATCC	1 cut(s)	215
BisI	GCNGC	6 cut(s)	99, 111, 114, 243, 423, 581
BlpI	GCTNAGC	2 cut(s)	94, 615
BlsI	GCNGC	6 cut(s)	100, 112, 115, 244, 424, 582
Bme1390I	CCNGG	3 cut(s)	427, 543, 544
BmeT110I	CYCGRG	1 cut(s)	542
BmrFI	CCNGG	3 cut(s)	427, 543, 544
BmsI	GCATC	2 cut(s)	80, 202
BpiI	GAAGAC	1 cut(s)	63
Bpu1102I	GCTNAGC	2 cut(s)	94, 615
BpuMI	CCSGG	2 cut(s)	543, 544
BsaHI	GRCGYC	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	542
BseBI	CCWGG	1 cut(s)	427
BseDI	CCNNGG	1 cut(s)	542
BseGI	GGATG	1 cut(s)	95
BseMII	CTCAG	2 cut(s)	108, 606
BseXI	GCAGC	6 cut(s)	85, 97, 125, 254, 409, 567
BseYI	CCCAGC	1 cut(s)	137
BsgI	GTGCAG	1 cut(s)	329
BshFI	GGCC	1 cut(s)	255
BsiHKCI	CYCGRG	1 cut(s)	542
BsiSI	CCGG	2 cut(s)	517, 543
BsmAI	GTCTC	1 cut(s)	313
BsmI	GAATGC	1 cut(s)	208
BsnI	GGCC	1 cut(s)	255
BsoBI	CYCGRG	1 cut(s)	542
Bsp1286I	GDGCHC	1 cut(s)	543
Bsp143I	GATC	3 cut(s)	64, 385, 633
Bsp1720I	GCTNAGC	2 cut(s)	94, 615
BspACI	CCGC	3 cut(s)	377, 479, 557
BspANI	GGCC	1 cut(s)	255
BspCNI	CTCAG	2 cut(s)	107, 607
BspMAI	CTGCAG	1 cut(s)	115
BspPI	GGATC	2 cut(s)	393, 641
BssECI	CCNNGG	1 cut(s)	542
BssMI	GATC	3 cut(s)	64, 385, 633
BssNI	GRCGYC	1 cut(s)	60
BssSI	CACGAG	1 cut(s)	316
Bst2BI	CACGAG	1 cut(s)	316
Bst2UI	CCWGG	1 cut(s)	427
BstACI	GRCGYC	1 cut(s)	60
BstC8I	GCNNGC	2 cut(s)	272, 335
BstDEI	CTNAG	2 cut(s)	94, 615
BstF5I	GGATG	1 cut(s)	95
BstKTI	GATC	3 cut(s)	67, 388, 636
BstMAI	GTCTC	1 cut(s)	313
BstMBI	GATC	3 cut(s)	64, 385, 633
BstMWI	GCNNNNNNNGC	4 cut(s)	107, 212, 271, 577
BstNI	CCWGG	1 cut(s)	427
BstSCI	CCNGG	3 cut(s)	425, 541, 542
BstSFI	CTRYAG	1 cut(s)	111
BstV1I	GCAGC	6 cut(s)	85, 97, 125, 254, 409, 567
BstV2I	GAAGAC	1 cut(s)	63
BstX2I	RGATCY	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	385
BsuI	GTATCC	1 cut(s)	215
BsuRI	GGCC	1 cut(s)	255
BtsCI	GGATG	1 cut(s)	95
BtsI	GCAGTG	1 cut(s)	443
BtsIMutI	CAGTG	1 cut(s)	443
Cac8I	GCNNGC	2 cut(s)	272, 335
Cfr9I	CCCGGG	1 cut(s)	542
Csp6I	GTAC	1 cut(s)	146
CviAII	CATG	2 cut(s)	103, 554
CviQI	GTAC	1 cut(s)	146
DdeI	CTNAG	2 cut(s)	94, 615
DpnI	GATC	3 cut(s)	66, 387, 635
DpnII	GATC	3 cut(s)	64, 385, 633
EciI	GGCGGA	1 cut(s)	494
Eco24I	GRGCYC	1 cut(s)	543
Eco88I	CYCGRG	1 cut(s)	542
EcoRII	CCWGG	1 cut(s)	425
EcoT38I	GRGCYC	1 cut(s)	543
FaeI	CATG	2 cut(s)	106, 557
FaiI	YATR	4 cut(s)	104, 174, 369, 555
FatI	CATG	2 cut(s)	102, 553
Fnu4HI	GCNGC	6 cut(s)	99, 111, 114, 243, 423, 581
FokI	GGATG	1 cut(s)	102
FriOI	GRGCYC	1 cut(s)	543
Fsp4HI	GCNGC	6 cut(s)	99, 111, 114, 243, 423, 581
FspBI	CTAG	1 cut(s)	492
GluI	GCNGC	6 cut(s)	99, 111, 114, 243, 423, 581
GsaI	CCCAGC	1 cut(s)	141
HaeIII	GGCC	1 cut(s)	255
HapII	CCGG	2 cut(s)	517, 543
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	2 cut(s)	106, 557
HinfI	GANTC	3 cut(s)	10, 497, 511
HpaII	CCGG	2 cut(s)	517, 543
HphI	GGTGA	1 cut(s)	637
Hpy188I	TCNGA	3 cut(s)	196, 211, 506
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	2 cut(s)	245, 568
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	5 cut(s)	113, 310, 337, 436, 583
HpyF10VI	GCNNNNNNNGC	4 cut(s)	107, 212, 271, 577
HpyF3I	CTNAG	2 cut(s)	94, 615
HpySE526I	ACGT	1 cut(s)	60
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	2 cut(s)	106, 557
Kzo9I	GATC	3 cut(s)	64, 385, 633
LmnI	GCTCC	1 cut(s)	577
LpnPI	CCDG	8 cut(s)	123, 172, 296, 339, 412, 439, 530, 556
Lsp1109I	GCAGC	6 cut(s)	85, 97, 125, 254, 409, 567
LweI	GCATC	2 cut(s)	80, 202
MaeI	CTAG	1 cut(s)	492
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	4 cut(s)	7, 157, 494, 559
MalI	GATC	3 cut(s)	66, 387, 635
MboI	GATC	3 cut(s)	64, 385, 633
MboII	GAAGA	2 cut(s)	49, 68
MflI	RGATCY	1 cut(s)	385
MhlI	GDGCHC	1 cut(s)	543
MluCI	AATT	2 cut(s)	122, 524
MlyI	GAGTC	2 cut(s)	4, 491
MnlI	CCTC	7 cut(s)	22, 43, 376, 412, 468, 513, 623
MseI	TTAA	1 cut(s)	643
MslI	CAYNNNNRTG	1 cut(s)	372
MspA1I	CMGCKG	1 cut(s)	98
MspI	CCGG	2 cut(s)	517, 543
MspR9I	CCNGG	3 cut(s)	427, 543, 544
Mva1269I	GAATGC	1 cut(s)	208
MvaI	CCWGG	1 cut(s)	427
MwoI	GCNNNNNNNGC	4 cut(s)	107, 212, 271, 577
NciI	CCSGG	2 cut(s)	543, 544
NdeII	GATC	3 cut(s)	64, 385, 633
NlaIII	CATG	2 cut(s)	106, 557
NmuCI	GTSAC	3 cut(s)	7, 157, 494
PcsI	WCGNNNNNNNCGW	1 cut(s)	534
PctI	GAATGC	1 cut(s)	208
PfeI	GAWTC	1 cut(s)	511
PkrI	GCNGC	6 cut(s)	100, 112, 115, 244, 424, 582
PleI	GAGTC	2 cut(s)	4, 491
PpsI	GAGTC	2 cut(s)	4, 491
Psp6I	CCWGG	1 cut(s)	425
PspFI	CCCAGC	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	425
PstI	CTGCAG	1 cut(s)	115
PsuI	RGATCY	1 cut(s)	385
PvuII	CAGCTG	1 cut(s)	98
RsaI	GTAC	1 cut(s)	147
RsaNI	GTAC	1 cut(s)	146
RseI	CAYNNNNRTG	1 cut(s)	372
SaqAI	TTAA	1 cut(s)	643
SatI	GCNGC	6 cut(s)	99, 111, 114, 243, 423, 581
Sau3AI	GATC	3 cut(s)	64, 385, 633
SchI	GAGTC	2 cut(s)	4, 491
ScrFI	CCNGG	3 cut(s)	427, 543, 544
SduI	GDGCHC	1 cut(s)	543
SfaNI	GCATC	2 cut(s)	80, 202
SfcI	CTRYAG	1 cut(s)	111
SmaI	CCCGGG	1 cut(s)	544
SmiMI	CAYNNNNRTG	1 cut(s)	372
SmlI	CTYRAG	1 cut(s)	12
SmoI	CTYRAG	1 cut(s)	12
SrfI	GCCCGGGC	1 cut(s)	544
Sse9I	AATT	2 cut(s)	122, 524
SsiI	CCGC	3 cut(s)	377, 479, 557
SspMI	CTAG	1 cut(s)	492
StyD4I	CCNGG	3 cut(s)	425, 541, 542
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	3 cut(s)	63, 449, 528
TasI	AATT	2 cut(s)	122, 524
TatI	WGTACW	1 cut(s)	145
TfiI	GAWTC	1 cut(s)	511
Tru1I	TTAA	1 cut(s)	643
Tru9I	TTAA	1 cut(s)	643
TscAI	CASTG	1 cut(s)	443
TseFI	GTSAC	3 cut(s)	7, 157, 494
TseI	GCWGC	6 cut(s)	98, 110, 113, 242, 422, 580
Tsp45I	GTSAC	3 cut(s)	7, 157, 494
TspDTI	ATGAA	2 cut(s)	96, 161
TspGWI	ACGGA	2 cut(s)	219, 548
TspMI	CCCGGG	1 cut(s)	542
TspRI	CASTG	1 cut(s)	443
XapI	RAATTY	1 cut(s)	524
XmaI	CCCGGG	1 cut(s)	542
XspI	CTAG	1 cut(s)	492
ZraI	GACGTC	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.