Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002610

Physical Location & Seq

Genomic Coordinates Reverse (-)

70381611 .. 70384654

Gene Structure 3044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0580200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGATTGTGCCTAAGCTTAATCGGAATGATGTTGAAAGCTATGAACATGTCCAGAAGATGATTCAAGACAAGGAAATCTCCGATTACACAACCACTTCCCAAACCAGTGAGTGCATATTTCTCTGGTGGCATGGTTGGTCCAGATTGAACAAAAAGATTTTTAGGAAGTGCCTCTTTAATATGATAAATATCCTTCCGTCGCTGTTTGAGGTTGTGACATGCACACTTGAGAAGAAGTCGTCAATCTCTGAGGTACCGTCACCCGATGTTGCTGAAGGACATCAATTTAAAACTGCTTCTTTGTTGGCAGACTTGGCGAGTGCAAGGGTTATAACTGAAGATGAACTTGATTCGACAACCCTTGGAAATGCAATTGAAGAGATGTTAGGGGATAAGAATAAAATGGCAGATATGTCCTGGAGGGCTCAGAGCTTATCGAGAGGAAAGAATGCGTTTCAAGGAATTCATACGAGAGATTCTTTTTATTACAACGCCTGGCAGTGGAAGCGTCGCAAGATTGACAAAGAGCATGCTTTGGCTGCACAGGCTGTTCGTTGGCACAAGACCAGCAAGACCAAGGCTATAAAAAAATGGAACTTATCCGGACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000902 GO:0000904 GO:0000910 GO:0001508 GO:0002028 GO:0003008 GO:0003254 GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005829 GO:0005856 GO:0005886 GO:0005911 GO:0006810 GO:0006888 GO:0006892 GO:0006893 GO:0006996 GO:0007009 GO:0007010 GO:0007016 GO:0007049 GO:0007154 GO:0007275 GO:0007399 GO:0007409 GO:0007528 GO:0008092 GO:0008104 GO:0008150 GO:0009653 GO:0009893 GO:0009986 GO:0009987 GO:0010035 GO:0010038 GO:0010256 GO:0010468 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0010649 GO:0010650 GO:0010765 GO:0010959 GO:0010960 GO:0012505 GO:0014704 GO:0014731 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016323 GO:0016328 GO:0016528 GO:0016529 GO:0019222 GO:0019226 GO:0019228 GO:0022008 GO:0022402 GO:0022407 GO:0022409 GO:0022607 GO:0022898 GO:0023052 GO:0030016 GO:0030017 GO:0030018 GO:0030030 GO:0030054 GO:0030154 GO:0030155 GO:0030182 GO:0030315 GO:0030424 GO:0030425 GO:0030507 GO:0030674 GO:0031175 GO:0031594 GO:0031674 GO:0032026 GO:0032386 GO:0032388 GO:0032409 GO:0032410 GO:0032411 GO:0032412 GO:0032413 GO:0032414 GO:0032501 GO:0032502 GO:0032507 GO:0032879 GO:0032880 GO:0032989 GO:0032990 GO:0033036 GO:0033157 GO:0033267 GO:0033268 GO:0034110 GO:0034112 GO:0034613 GO:0034762 GO:0034763 GO:0034764 GO:0034765 GO:0034766 GO:0034767 GO:0035637 GO:0036477 GO:0042221 GO:0042383 GO:0042391 GO:0042592 GO:0042886 GO:0042995 GO:0043001 GO:0043005 GO:0043034 GO:0043194 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043266 GO:0043267 GO:0043269 GO:0043270 GO:0043271 GO:0043292 GO:0044085 GO:0044091 GO:0044092 GO:0044093 GO:0044291 GO:0044304 GO:0044325 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044449 GO:0044456 GO:0044459 GO:0044463 GO:0044464 GO:0045184 GO:0045185 GO:0045202 GO:0045211 GO:0045296 GO:0045760 GO:0045785 GO:0045838 GO:0046907 GO:0048193 GO:0048468 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050808 GO:0050839 GO:0050877 GO:0050896 GO:0051049 GO:0051050 GO:0051051 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051235 GO:0051301 GO:0051641 GO:0051649 GO:0051651 GO:0051716 GO:0055065 GO:0055080 GO:0060090 GO:0060255 GO:0060341 GO:0061024 GO:0061564 GO:0061640 GO:0061951 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0070727 GO:0070887 GO:0071241 GO:0071248 GO:0071286 GO:0071702 GO:0071705 GO:0071709 GO:0071840 GO:0071944 GO:0072507 GO:0072657 GO:0072658 GO:0072659 GO:0072660 GO:0090087 GO:0090150 GO:0090313 GO:0090314 GO:0090316 GO:0097060 GO:0097447 GO:0097458 GO:0098590 GO:0098771 GO:0098794 GO:0098876 GO:0098900 GO:0098901 GO:0098902 GO:0099080 GO:0099081 GO:0099512 GO:0120025 GO:0120036 GO:0120038 GO:0120039 GO:1900825 GO:1900827 GO:1901016 GO:1901017 GO:1901379 GO:1901380 GO:1902259 GO:1902260 GO:1902305 GO:1902307 GO:1903047 GO:1903533 GO:1903817 GO:1903827 GO:1903829 GO:1904062 GO:1904063 GO:1904064 GO:1904181 GO:1904951 GO:1905475 GO:1905477 GO:1990778 GO:2000649 GO:2000651 GO:2001257 GO:2001258 GO:2001259

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_3

Protein Analysis

203

Amino Acids

23.46

Weight (kDa)

9.18

Isoelectric Point (pI)

57.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002610)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14230 AT5G14230
fragaria_vesca	FvH4_4g24120 FvH4_6g53080
malus_domestica	MD09G1014800.v1.1 MD13G1115300.v1.1 MD17G1014900.v1.1
prunus_persica	Prupe.1G232000_v2.0.a1 Prupe.1G232000_v2.0.a1 Prupe.3G302900_v2.0.a1
pyrus_communis	pycom111g01210 pycom13g09980 pycom16g09700 pycom16g09730 pycom16g09770 pycom17g01190 pycom17g01200
rosa_chinensis	RchiOBHm_Chr2g0174861 RchiOBHm_Chr4g0430901
rosa_laevigata	RLG00000006940 RLG00000022302
rosa_multiflora	Rmu_sc0006263.1_g000010 Rmu_sc0009766.1_g000002 Rmu_sc0036631.1_g000001
rosa_roxburghii	Rroxscaffold_2G00077630 Rroxscaffold_5G00372590
rosa_rugosa	Rorug02G0580100 Rorug02G0580200 Rorug04G0247300
rosa_samantha	Rh2AG661200 Rh2BG672600 Rh2CG635400 Rh2DG685700 Rh4AG302700 Rh4AG303600 Rh4BG310800 Rh4CG327200 Rh4DG307000
rosa_wichuraiana	Rw2G054190 Rw4G026310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	332
Acc65I	GGTACC	1 cut(s)	253
AccB1I	GGYRCC	1 cut(s)	253
AccIII	TCCGGA	1 cut(s)	602
AcsI	RAATTY	1 cut(s)	462
AcuI	CTGAAG	2 cut(s)	294, 357
AfaI	GTAC	1 cut(s)	255
AfiI	CCNNNNNNNGG	1 cut(s)	501
AflIII	ACRYGT	1 cut(s)	46
AgsI	TTSAA	5 cut(s)	35, 65, 148, 377, 458
AjnI	CCWGG	2 cut(s)	416, 494
AluBI	AGCT	3 cut(s)	16, 39, 432
AluI	AGCT	3 cut(s)	16, 39, 432
Aor13HI	TCCGGA	1 cut(s)	602
ApeKI	GCWGC	1 cut(s)	539
ApoI	RAATTY	1 cut(s)	462
Asp718I	GGTACC	1 cut(s)	253
AspS9I	GGNCC	1 cut(s)	138
AsuHPI	GGTGA	1 cut(s)	252
AvaII	GGWCC	1 cut(s)	138
BanI	GGYRCC	1 cut(s)	253
BanII	GRGCYC	1 cut(s)	427
BbvI	GCAGC	1 cut(s)	526
BciT130I	CCWGG	2 cut(s)	418, 496
BisI	GCNGC	1 cut(s)	540
BlsI	GCNGC	1 cut(s)	541
Bme1390I	CCNGG	2 cut(s)	418, 496
Bme18I	GGWCC	1 cut(s)	138
BmgT120I	GGNCC	1 cut(s)	138
BmiI	GGNNCC	1 cut(s)	255
BmrFI	CCNGG	2 cut(s)	418, 496
BpmI	CTGGAG	1 cut(s)	439
Bpu10I	CCTNAGC	1 cut(s)	12
BpuEI	CTTGAG	1 cut(s)	248
BsaBI	GATNNNNATC	1 cut(s)	188
BsaJI	CCNNGG	2 cut(s)	361, 576
BsaWI	WCCGGW	1 cut(s)	602
Bsc4I	CCNNNNNNNGG	1 cut(s)	501
Bse1I	ACTGG	1 cut(s)	105
Bse8I	GATNNNNATC	1 cut(s)	188
BseAI	TCCGGA	1 cut(s)	602
BseBI	CCWGG	2 cut(s)	418, 496
BseDI	CCNNGG	2 cut(s)	361, 576
BseJI	GATNNNNATC	1 cut(s)	188
BseLI	CCNNNNNNNGG	1 cut(s)	501
BseMII	CTCAG	2 cut(s)	240, 440
BseNI	ACTGG	1 cut(s)	105
BseXI	GCAGC	1 cut(s)	526
BsgI	GTGCAG	1 cut(s)	525
BshNI	GGYRCC	1 cut(s)	253
BsiSI	CCGG	1 cut(s)	603
BslI	CCNNNNNNNGG	1 cut(s)	501
BsmI	GAATGC	1 cut(s)	454
Bsp1286I	GDGCHC	1 cut(s)	427
Bsp13I	TCCGGA	1 cut(s)	602
BspCNI	CTCAG	2 cut(s)	241, 439
BspEI	TCCGGA	1 cut(s)	602
BspLI	GGNNCC	1 cut(s)	255
BspT107I	GGYRCC	1 cut(s)	253
BsrI	ACTGG	1 cut(s)	105
BssECI	CCNNGG	2 cut(s)	361, 576
BssT1I	CCWWGG	2 cut(s)	361, 576
Bst2UI	CCWGG	2 cut(s)	418, 496
Bst4CI	ACNGT	2 cut(s)	258, 609
Bst6I	CTCTTC	1 cut(s)	372
BstC8I	GCNNGC	1 cut(s)	531
BstDEI	CTNAG	3 cut(s)	12, 249, 426
BstMWI	GCNNNNNNNGC	4 cut(s)	314, 505, 539, 545
BstNI	CCWGG	2 cut(s)	418, 496
BstNSI	RCATGY	3 cut(s)	50, 222, 533
BstSCI	CCNGG	2 cut(s)	416, 494
BstV1I	GCAGC	1 cut(s)	526
BtsI	GCAGTG	1 cut(s)	506
BtsIMutI	CAGTG	2 cut(s)	112, 506
Cac8I	GCNNGC	1 cut(s)	531
Cfr13I	GGNCC	1 cut(s)	138
CseI	GACGC	1 cut(s)	497
Csp6I	GTAC	1 cut(s)	254
CviAII	CATG	4 cut(s)	47, 131, 219, 530
CviJI	RGCY	7 cut(s)	16, 39, 425, 432, 539, 548, 581
CviKI_1	RGCY	7 cut(s)	16, 39, 425, 432, 539, 548, 581
CviQI	GTAC	1 cut(s)	254
DdeI	CTNAG	3 cut(s)	12, 249, 426
DraI	TTTAAA	1 cut(s)	289
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
Eco130I	CCWWGG	2 cut(s)	361, 576
Eco24I	GRGCYC	1 cut(s)	427
Eco47I	GGWCC	1 cut(s)	138
Eco57I	CTGAAG	2 cut(s)	294, 357
EcoRI	GAATTC	1 cut(s)	462
EcoRII	CCWGG	2 cut(s)	416, 494
EcoT14I	CCWWGG	2 cut(s)	361, 576
EcoT38I	GRGCYC	1 cut(s)	427
ErhI	CCWWGG	2 cut(s)	361, 576
FaeI	CATG	4 cut(s)	50, 134, 222, 533
FalI	AAGNNNNNCTT	4 cut(s)	158, 190, 330, 362
FatI	CATG	4 cut(s)	46, 130, 218, 529
Fnu4HI	GCNGC	1 cut(s)	540
FriOI	GRGCYC	1 cut(s)	427
Fsp4HI	GCNGC	1 cut(s)	540
GluI	GCNGC	1 cut(s)	540
GsuI	CTGGAG	1 cut(s)	439
HapII	CCGG	1 cut(s)	603
HgaI	GACGC	1 cut(s)	497
Hin1II	CATG	4 cut(s)	50, 134, 222, 533
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	3 cut(s)	61, 350, 476
HpaII	CCGG	1 cut(s)	603
HphI	GGTGA	1 cut(s)	252
Hpy188I	TCNGA	4 cut(s)	24, 82, 250, 429
Hpy188III	TCNNGA	5 cut(s)	52, 65, 141, 438, 603
Hpy99I	CGWCG	2 cut(s)	202, 513
HpyAV	CCTTC	2 cut(s)	203, 269
HpyCH4III	ACNGT	2 cut(s)	258, 609
HpyCH4V	TGCA	5 cut(s)	114, 222, 323, 371, 542
HpyF10VI	GCNNNNNNNGC	4 cut(s)	314, 505, 539, 545
HpyF3I	CTNAG	3 cut(s)	12, 249, 426
Hsp92II	CATG	4 cut(s)	50, 134, 222, 533
Kpn2I	TCCGGA	1 cut(s)	602
KpnI	GGTACC	1 cut(s)	257
Lsp1109I	GCAGC	1 cut(s)	526
MaeIII	GTNAC	2 cut(s)	214, 258
MboII	GAAGA	4 cut(s)	67, 244, 350, 389
MfeI	CAATTG	1 cut(s)	372
MhlI	GDGCHC	1 cut(s)	427
MluCI	AATT	3 cut(s)	284, 372, 462
MnlI	CCTC	5 cut(s)	182, 202, 244, 414, 434
MroI	TCCGGA	1 cut(s)	602
MseI	TTAA	3 cut(s)	18, 177, 288
MspI	CCGG	1 cut(s)	603
MspR9I	CCNGG	2 cut(s)	418, 496
MunI	CAATTG	1 cut(s)	372
Mva1269I	GAATGC	1 cut(s)	454
MvaI	CCWGG	2 cut(s)	418, 496
MwoI	GCNNNNNNNGC	4 cut(s)	314, 505, 539, 545
NlaIII	CATG	4 cut(s)	50, 134, 222, 533
NlaIV	GGNNCC	1 cut(s)	255
NmuCI	GTSAC	2 cut(s)	214, 258
NspI	RCATGY	3 cut(s)	50, 222, 533
PaeI	GCATGC	1 cut(s)	533
PciI	ACATGT	1 cut(s)	46
PctI	GAATGC	1 cut(s)	454
PfeI	GAWTC	3 cut(s)	61, 350, 476
PfoI	TCCNGGA	1 cut(s)	416
PkrI	GCNGC	1 cut(s)	541
PscI	ACATGT	1 cut(s)	46
PsiI	TTATAA	1 cut(s)	332
Psp6I	CCWGG	2 cut(s)	416, 494
PspGI	CCWGG	2 cut(s)	416, 494
PspN4I	GGNNCC	1 cut(s)	255
PspPI	GGNCC	1 cut(s)	138
RsaI	GTAC	1 cut(s)	255
RsaNI	GTAC	1 cut(s)	254
SaqAI	TTAA	3 cut(s)	18, 177, 288
SatI	GCNGC	1 cut(s)	540
Sau96I	GGNCC	1 cut(s)	138
ScrFI	CCNGG	2 cut(s)	418, 496
SduI	GDGCHC	1 cut(s)	427
SetI	ASST	5 cut(s)	18, 41, 213, 255, 434
SinI	GGWCC	1 cut(s)	138
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
SphI	GCATGC	1 cut(s)	533
Sse9I	AATT	3 cut(s)	284, 372, 462
StyD4I	CCNGG	2 cut(s)	416, 494
StyI	CCWWGG	2 cut(s)	361, 576
TaaI	ACNGT	2 cut(s)	258, 609
TaqI	TCGA	2 cut(s)	353, 437
TasI	AATT	3 cut(s)	284, 372, 462
TfiI	GAWTC	3 cut(s)	61, 350, 476
Tru1I	TTAA	3 cut(s)	18, 177, 288
Tru9I	TTAA	3 cut(s)	18, 177, 288
TscAI	CASTG	2 cut(s)	112, 506
TseFI	GTSAC	2 cut(s)	214, 258
TseI	GCWGC	1 cut(s)	539
Tsp45I	GTSAC	2 cut(s)	214, 258
TspDTI	ATGAA	3 cut(s)	57, 357, 455
TspGWI	ACGGA	1 cut(s)	186
TspRI	CASTG	2 cut(s)	112, 506
VpaK11BI	GGWCC	1 cut(s)	138
XapI	RAATTY	1 cut(s)	462
XceI	RCATGY	3 cut(s)	50, 222, 533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.