Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0002058

Physical Location & Seq

Genomic Coordinates Reverse (-)

8231004 .. 8232771

Gene Structure 1768 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGAGCCAGCAAATTTTCTCCATCTGGCTAAATCATGATCCAACATCGAAGGTGGGAGGTGAGATCGTCTTTGGTGGATTTGATTGGAGGCACTTTACTGGTGATCACACCTACATCCCAATTTCACGAAAGGGTTACTGGCAGATTGAGGTTGGAGATGTTATTGTTGCAGACAAATCTACAGGACTGTGCAAGGGCGGTTGTGGTGCCATTGTAGACTCAGGGACATCCTTCCTTGCTGGTCCAACTACTATTGTGGCTCAGATCAACCATGCCATTGGAGCAGACGGATTTGTGAGCTTGGAATGTAAAAATGTCATTTCCACTTATGGAAATTTGATATGGGAATATTTAGTATCTGGGGCGCGGCCTGATATAGTGTGTGTGGACATCGGTCTATGTTCATATGGTGGTTCTCGGAATATAAACAATTATATTGAGTCAGTGACTGAGAACAAAATCGGGAAGGAATCATCAGTCGATGAAACTCCTTCATGCACCTTGTGTGAAATGATAGTCTACTGGGTTCAACTACAGCTTAAAAAACAAATAGAAAAGGAAAAAATATTTAGCTATGTGAATGAGCTGTGCGAGAAGCTTCCAAATCCGCTAAAAAGGTCATTCGTCAACTGTGATAACATTGCATTCATGCCGGATATTACATTTACGATCAGAAACAAATCCTTCACCCTCTCTCCAGAACAGTACATACTTAAAGTAGAAGAAAAATGCTCCACTGTCTGCCTTAGTGGATTTACTGCTTTGGATGTGCCTCCTCCACAAGGTCCTCTATGGGTTCTCGGAGCTCTGTTCTTGGGAGCATACCACACAGTGTTTGATTTCGGTAATCTCAGGGTAGGATTCGCAAAAGCTACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asp SapB_1 SapB_2

Protein Analysis

293

Amino Acids

32.2

Weight (kDa)

5.42

Isoelectric Point (pI)

37.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asp	PF00026	2 - 291	1.1e-48	Eukaryotic aspartyl protease
SapB_2	PF03489	102 - 134	8.3e-11	Saposin-like type B, region 2
SapB_1	PF05184	164 - 201	6.3e-09	Saposin-like type B, region 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22050
fragaria_vesca	FvH4_4g21720 FvH4_4g21720 FvH4_4g21720 FvH4_6g08500 FvH4_6g08500 FvH4_6g08500 FvH4_6g08500
malus_domestica	MD04G1186500.v1.1 MD04G1186600.v1.1 MD13G1138100.v1.1 MD16G1133900.v1.1
prunus_persica	Prupe.1G103000_v2.0.a1 Prupe.1G103000_v2.0.a1 Prupe.1G103000_v2.0.a1 Prupe.1G103000_v2.0.a1 Prupe.6G304600_v2.0.a1 Prupe.6G304600_v2.0.a1 Prupe.6G304600_v2.0.a1
pyrus_communis	pycom04g16480 pycom13g12020 pycom16g11820
rosa_chinensis	RchiOBHm_Chr3g0458541 RchiOBHm_Chr4g0427921
rosa_laevigata	RLG00000007200 RLG00000025149
rosa_roxburghii	Rroxscaffold_2G00125080 Rroxscaffold_5G00369590 Rroxscaffold_6G00420990
rosa_rugosa	Rorug03G0029500 Rorug03G0029500 Rorug03G0029500 Rorug03G0029600 Rorug04G0220600
rosa_samantha	Rh3AG087900 Rh3BG091000 Rh3CG091100 Rh3DG091900 Rh4AG277600 Rh4BG283400 Rh4CG298900 Rh4DG280600
rosa_wichuraiana	Rw3G007510 Rw4G024120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	206
AccI	GTMKAC	2 cut(s)	216, 519
AccII	CGCG	1 cut(s)	367
AciI	CCGC	3 cut(s)	198, 367, 608
AclWI	GGATC	1 cut(s)	32
AcsI	RAATTY	2 cut(s)	12, 334
AdeI	CACNNNGTG	2 cut(s)	504, 832
AfaI	GTAC	1 cut(s)	707
AfiI	CCNNNNNNNGG	1 cut(s)	782
AgsI	TTSAA	1 cut(s)	530
AluBI	AGCT	7 cut(s)	300, 538, 573, 586, 598, 806, 872
AluI	AGCT	7 cut(s)	300, 538, 573, 586, 598, 806, 872
Alw21I	GWGCWC	1 cut(s)	808
AlwI	GGATC	1 cut(s)	32
AlwNI	CAGNNNCTG	1 cut(s)	449
AoxI	GGCC	1 cut(s)	368
ApoI	RAATTY	2 cut(s)	12, 334
AspLEI	GCGC	1 cut(s)	367
AspS9I	GGNCC	2 cut(s)	242, 785
AsuHPI	GGTGA	3 cut(s)	71, 113, 679
AvaII	GGWCC	2 cut(s)	242, 785
BanI	GGYRCC	1 cut(s)	206
BanII	GRGCYC	1 cut(s)	808
Bbv12I	GWGCWC	1 cut(s)	808
BccI	CCATC	1 cut(s)	29
BclI	TGATCA	1 cut(s)	103
BfmI	CTRYAG	2 cut(s)	180, 533
BisI	GCNGC	1 cut(s)	368
BlsI	GCNGC	1 cut(s)	369
Bme18I	GGWCC	2 cut(s)	242, 785
BmgT120I	GGNCC	2 cut(s)	242, 785
BmiI	GGNNCC	1 cut(s)	208
BmrI	ACTGGG	1 cut(s)	532
BmuI	ACTGGG	1 cut(s)	532
BoxI	GACNNNNGTC	1 cut(s)	393
BpmI	CTGGAG	1 cut(s)	681
BsaAI	YACGTR	1 cut(s)	876
BsaXI	ACNNNNNCTCC	2 cut(s)	679, 709
Bsc4I	CCNNNNNNNGG	1 cut(s)	782
Bse1I	ACTGG	3 cut(s)	103, 143, 527
Bse3DI	GCAATG	1 cut(s)	639
BseGI	GGATG	3 cut(s)	114, 227, 772
BseLI	CCNNNNNNNGG	1 cut(s)	782
BseMI	GCAATG	1 cut(s)	639
BseMII	CTCAG	4 cut(s)	234, 275, 441, 865
BseNI	ACTGG	3 cut(s)	103, 143, 527
BseRI	GAGGAG	1 cut(s)	765
Bsh1236I	CGCG	1 cut(s)	367
BshFI	GGCC	1 cut(s)	370
BshNI	GGYRCC	1 cut(s)	206
BsiHKAI	GWGCWC	1 cut(s)	808
BsiSI	CCGG	1 cut(s)	653
BslFI	GGGAC	1 cut(s)	238
BslI	CCNNNNNNNGG	1 cut(s)	782
BsmFI	GGGAC	1 cut(s)	238
BsmI	GAATGC	1 cut(s)	644
BsnI	GGCC	1 cut(s)	370
Bsp1286I	GDGCHC	1 cut(s)	808
Bsp143I	GATC	5 cut(s)	37, 63, 103, 264, 669
BspACI	CCGC	3 cut(s)	198, 367, 608
BspANI	GGCC	1 cut(s)	370
BspCNI	CTCAG	4 cut(s)	233, 274, 442, 864
BspFNI	CGCG	1 cut(s)	367
BspHI	TCATGA	1 cut(s)	34
BspLI	GGNNCC	1 cut(s)	208
BspPI	GGATC	1 cut(s)	32
BspT107I	GGYRCC	1 cut(s)	206
BsrDI	GCAATG	1 cut(s)	639
BsrI	ACTGG	3 cut(s)	103, 143, 527
BssMI	GATC	5 cut(s)	37, 63, 103, 264, 669
Bst4CI	ACNGT	5 cut(s)	189, 632, 705, 739, 832
BstBAI	YACGTR	1 cut(s)	876
BstC8I	GCNNGC	1 cut(s)	8
BstDEI	CTNAG	5 cut(s)	220, 261, 450, 746, 851
BstENI	CCTNNNNNAGG	1 cut(s)	780
BstF5I	GGATG	3 cut(s)	114, 227, 772
BstFNI	CGCG	1 cut(s)	367
BstHHI	GCGC	1 cut(s)	367
BstKTI	GATC	5 cut(s)	40, 66, 106, 267, 672
BstMBI	GATC	5 cut(s)	37, 63, 103, 264, 669
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstPAI	GACNNNNGTC	1 cut(s)	393
BstSFI	CTRYAG	2 cut(s)	180, 533
BstSNI	TACGTA	1 cut(s)	876
BstUI	CGCG	1 cut(s)	367
BstXI	CCANNNNNNTGG	1 cut(s)	278
BsuRI	GGCC	1 cut(s)	370
BtsCI	GGATG	3 cut(s)	114, 227, 772
BtsIMutI	CAGTG	3 cut(s)	450, 735, 837
Cac8I	GCNNGC	1 cut(s)	8
CaiI	CAGNNNCTG	1 cut(s)	449
CciI	TCATGA	1 cut(s)	34
CfoI	GCGC	1 cut(s)	367
Cfr13I	GGNCC	2 cut(s)	242, 785
Csp6I	GTAC	1 cut(s)	706
CviAII	CATG	4 cut(s)	35, 272, 495, 649
CviQI	GTAC	1 cut(s)	706
DdeI	CTNAG	5 cut(s)	220, 261, 450, 746, 851
DpnI	GATC	5 cut(s)	39, 65, 105, 266, 671
DpnII	GATC	5 cut(s)	37, 63, 103, 264, 669
DraIII	CACNNNGTG	2 cut(s)	504, 832
Ecl136II	GAGCTC	1 cut(s)	806
Eco105I	TACGTA	1 cut(s)	876
Eco24I	GRGCYC	1 cut(s)	808
Eco47I	GGWCC	2 cut(s)	242, 785
Eco53kI	GAGCTC	1 cut(s)	806
EcoICRI	GAGCTC	1 cut(s)	806
EcoNI	CCTNNNNNAGG	1 cut(s)	780
EcoO109I	RGGNCCY	1 cut(s)	785
EcoT38I	GRGCYC	1 cut(s)	808
FaeI	CATG	4 cut(s)	38, 275, 498, 652
FaqI	GGGAC	1 cut(s)	238
FatI	CATG	4 cut(s)	34, 271, 494, 648
FauNDI	CATATG	1 cut(s)	406
FbaI	TGATCA	1 cut(s)	103
FblI	GTMKAC	2 cut(s)	216, 519
Fnu4HI	GCNGC	1 cut(s)	368
FokI	GGATG	3 cut(s)	101, 214, 779
FriOI	GRGCYC	1 cut(s)	808
Fsp4HI	GCNGC	1 cut(s)	368
GlaI	GCGC	1 cut(s)	366
GluI	GCNGC	1 cut(s)	368
GsuI	CTGGAG	1 cut(s)	681
HaeIII	GGCC	1 cut(s)	370
HapII	CCGG	1 cut(s)	653
HhaI	GCGC	1 cut(s)	367
Hin1II	CATG	4 cut(s)	38, 275, 498, 652
Hin6I	GCGC	1 cut(s)	365
HinP1I	GCGC	1 cut(s)	365
HincII	GTYRAC	1 cut(s)	628
HindII	GTYRAC	1 cut(s)	628
HindIII	AAGCTT	1 cut(s)	596
HinfI	GANTC	4 cut(s)	218, 440, 470, 861
HpaII	CCGG	1 cut(s)	653
HphI	GGTGA	3 cut(s)	71, 113, 679
Hpy166II	GTNNAC	4 cut(s)	217, 388, 520, 628
Hpy188I	TCNGA	4 cut(s)	264, 420, 674, 803
Hpy188III	TCNNGA	4 cut(s)	35, 126, 463, 698
Hpy8I	GTNNAC	4 cut(s)	217, 388, 520, 628
HpyAV	CCTTC	5 cut(s)	43, 241, 460, 501, 694
HpyCH4III	ACNGT	5 cut(s)	189, 632, 705, 739, 832
HpyCH4IV	ACGT	1 cut(s)	875
HpyCH4V	TGCA	4 cut(s)	170, 192, 498, 644
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpyF3I	CTNAG	5 cut(s)	220, 261, 450, 746, 851
HpySE526I	ACGT	1 cut(s)	875
Hsp92II	CATG	4 cut(s)	38, 275, 498, 652
HspAI	GCGC	1 cut(s)	365
Ksp22I	TGATCA	1 cut(s)	103
Kzo9I	GATC	5 cut(s)	37, 63, 103, 264, 669
LmnI	GCTCC	4 cut(s)	281, 737, 803, 818
MaeII	ACGT	1 cut(s)	875
MaeIII	GTNAC	2 cut(s)	134, 445
MalI	GATC	5 cut(s)	39, 65, 105, 266, 671
MboI	GATC	5 cut(s)	37, 63, 103, 264, 669
MboII	GAAGA	1 cut(s)	734
MhlI	GDGCHC	1 cut(s)	808
MluCI	AATT	4 cut(s)	12, 120, 334, 430
MlyI	GAGTC	2 cut(s)	212, 449
MmeI	TCCRAC	3 cut(s)	65, 133, 269
MnlI	CCTC	7 cut(s)	50, 81, 142, 701, 783, 786, 798
MseI	TTAA	2 cut(s)	540, 714
MspI	CCGG	1 cut(s)	653
Mva1269I	GAATGC	1 cut(s)	644
MvnI	CGCG	1 cut(s)	367
MwoI	GCNNNNNNNGC	1 cut(s)	281
NdeI	CATATG	1 cut(s)	406
NdeII	GATC	5 cut(s)	37, 63, 103, 264, 669
NlaIII	CATG	4 cut(s)	38, 275, 498, 652
NlaIV	GGNNCC	1 cut(s)	208
NmuCI	GTSAC	1 cut(s)	445
PagI	TCATGA	1 cut(s)	34
PctI	GAATGC	1 cut(s)	644
PfeI	GAWTC	2 cut(s)	470, 861
PkrI	GCNGC	1 cut(s)	369
PleI	GAGTC	2 cut(s)	212, 448
PpsI	GAGTC	2 cut(s)	212, 448
Ppu21I	YACGTR	1 cut(s)	876
PpuMI	RGGWCCY	1 cut(s)	785
PshAI	GACNNNNGTC	1 cut(s)	393
Psp124BI	GAGCTC	1 cut(s)	808
Psp5II	RGGWCCY	1 cut(s)	785
PspN4I	GGNNCC	1 cut(s)	208
PspPI	GGNCC	2 cut(s)	242, 785
PspPPI	RGGWCCY	1 cut(s)	785
PsrI	GAACNNNNNNTAC	2 cut(s)	693, 725
PstNI	CAGNNNCTG	1 cut(s)	449
RsaI	GTAC	1 cut(s)	707
RsaNI	GTAC	1 cut(s)	706
SacI	GAGCTC	1 cut(s)	808
SaqAI	TTAA	2 cut(s)	540, 714
SatI	GCNGC	1 cut(s)	368
Sau3AI	GATC	5 cut(s)	37, 63, 103, 264, 669
Sau96I	GGNCC	2 cut(s)	242, 785
SchI	GAGTC	2 cut(s)	212, 449
SduI	GDGCHC	1 cut(s)	808
SfcI	CTRYAG	2 cut(s)	180, 533
SinI	GGWCC	2 cut(s)	242, 785
SnaBI	TACGTA	1 cut(s)	876
Sse9I	AATT	4 cut(s)	12, 120, 334, 430
SsiI	CCGC	3 cut(s)	198, 367, 608
SspI	AATATT	2 cut(s)	350, 567
SstI	GAGCTC	1 cut(s)	808
TaaI	ACNGT	5 cut(s)	189, 632, 705, 739, 832
TaiI	ACGT	1 cut(s)	878
TaqI	TCGA	2 cut(s)	47, 480
TaqII	GACCGA	1 cut(s)	383
TasI	AATT	4 cut(s)	12, 120, 334, 430
TatI	WGTACW	1 cut(s)	705
TauI	GCSGC	1 cut(s)	370
TfiI	GAWTC	2 cut(s)	470, 861
Tru1I	TTAA	2 cut(s)	540, 714
Tru9I	TTAA	2 cut(s)	540, 714
TscAI	CASTG	3 cut(s)	450, 742, 837
TseFI	GTSAC	1 cut(s)	445
Tsp45I	GTSAC	1 cut(s)	445
TspDTI	ATGAA	4 cut(s)	393, 483, 498, 637
TspGWI	ACGGA	1 cut(s)	303
TspRI	CASTG	3 cut(s)	450, 742, 837
VpaK11BI	GGWCC	2 cut(s)	242, 785
XagI	CCTNNNNNAGG	1 cut(s)	780
XapI	RAATTY	2 cut(s)	12, 334
XmiI	GTMKAC	2 cut(s)	216, 519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.