pycom16g22830

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0003372
Physical Location & Seq
Reverse (-)
23196120 .. 23198695
2576 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 816 bp
ATGCAATCGCCGGCGACACGGTCAATATCCCTAAAACCTTCTTCACCGACAGAGATGCTGATAAAGGAAGAAGAAGGAGAGAATGAATGCCATAGCGATATGAATCCCCCAAATCCCTCCTCCTCCTCTTCCACCGCCACCAACAGAGATGCCTCCGATGGCTTTGAAACTGCTAGCGAAGGCGAACTCAACGACGACGAAATCCCTCAACAACTCCATCTCCAAGACGAACAACAAGAAACTCCCTCTCCGAACGATGACGACGTTGAATCGAAGCAGAAAGCGTTTGAAGAAGCAAGTGATGTGAAAATTGAAGGAAATAGACTTTTTGGCAGTGGGCAATACCAGGAGGCACTAACACAGTATGAGCTTGCTTTACACCTTGCACCTGATATGCCACTGTCTGTCGAATTACGTTCCATTTGTCATTTAAACAGTGCAGTATGCTTCTCGAAATTGGAAAAGTATGAGGACGCAATCAAGGAATGCACAAAAGCGCTTGAACTCAATCCTTCATATATGAAAGCTCTGCTTAGAAGAGCAGAAACTCATGAAAAGCTCGAGCATTTTGAAGAGGCTATTGTTGATATGAAAAGTGTCTTGGAACTGGATCCTTCAAATGACCAAGCCAAAATGGCCATTCGCCGTTTGGGGCCACTAGCTGAAGAAAAGAGAGAAAAGATGAAAGAGGAGATGATAGGGAAGCTGAAAGAAATGGGCAACTCGCTTTTGGGCCGTTTTGGAATGAGCGTCGACAACTTTAAAGCAGTCAAAGATCCAAACACTGGCTCATATTCTCTTTCATTCCAAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_1 TPR_2 TPR_8

Protein Analysis

272

Amino Acids

30.26

Weight (kDa)

4.68

Isoelectric Point (pI)

58.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_1 PF00515 142 - 173 3.3e-07 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 785
AccI GTMKAC 1 cut(s) 753
AciI CCGC 1 cut(s) 135
AclWI GGATC 3 cut(s) 605, 618, 770
AcoI YGGCCR 1 cut(s) 636
AcuI CTGAAG 1 cut(s) 684
AfeI AGCGCT 1 cut(s) 498
AfiI CCNNNNNNNGG 1 cut(s) 785
AgsI TTSAA 7 cut(s) 167, 269, 290, 314, 503, 572, 618
AjnI CCWGG 1 cut(s) 345
AjuI GAANNNNNNNTTGG 2 cut(s) 584, 616
AluBI AGCT 5 cut(s) 370, 527, 559, 662, 706
AluI AGCT 5 cut(s) 370, 527, 559, 662, 706
AlwI GGATC 3 cut(s) 605, 618, 770
Ama87I CYCGRG 1 cut(s) 560
Aor51HI AGCGCT 1 cut(s) 498
AoxI GGCC 3 cut(s) 636, 653, 733
AspLEI GCGC 1 cut(s) 499
AspS9I GGNCC 2 cut(s) 653, 733
AsuHPI GGTGA 1 cut(s) 36
AsuNHI GCTAGC 1 cut(s) 173
AvaI CYCGRG 1 cut(s) 560
BalI TGGCCA 1 cut(s) 638
BamHI GGATCC 1 cut(s) 610
BccI CCATC 2 cut(s) 152, 225
BceAI ACGGC 2 cut(s) 630, 720
BcgI CGANNNNNNTGC 2 cut(s) 37, 71
BciT130I CCWGG 1 cut(s) 347
BfaI CTAG 3 cut(s) 174, 659, 814
BfoI RGCGCY 1 cut(s) 500
BglI GCCNNNNNGGC 1 cut(s) 635
Bme1390I CCNGG 1 cut(s) 347
BmeT110I CYCGRG 1 cut(s) 560
BmgT120I GGNCC 2 cut(s) 653, 733
BmiI GGNNCC 2 cut(s) 612, 654
BmrFI CCNGG 1 cut(s) 347
BmsI GCATC 2 cut(s) 45, 139
BmtI GCTAGC 1 cut(s) 177
BsaBI GATNNNNATC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 808
BsaXI ACNNNNNCTCC 4 cut(s) 204, 232, 234, 262
Bsc4I CCNNNNNNNGG 1 cut(s) 785
Bse118I RCCGGY 1 cut(s) 10
Bse1I ACTGG 2 cut(s) 612, 790
Bse8I GATNNNNATC 1 cut(s) 102
BseBI CCWGG 1 cut(s) 347
BseDI CCNNGG 1 cut(s) 808
BseJI GATNNNNATC 1 cut(s) 102
BseLI CCNNNNNNNGG 1 cut(s) 785
BseNI ACTGG 2 cut(s) 612, 790
BseRI GAGGAG 4 cut(s) 109, 112, 115, 704
BsgI GTGCAG 1 cut(s) 459
BshFI GGCC 3 cut(s) 638, 655, 735
BsiHKCI CYCGRG 1 cut(s) 560
BsiSI CCGG 1 cut(s) 11
BslI CCNNNNNNNGG 1 cut(s) 785
BsmI GAATGC 2 cut(s) 92, 491
BsnI GGCC 3 cut(s) 638, 655, 735
BsoBI CYCGRG 1 cut(s) 560
Bsp143I GATC 2 cut(s) 610, 775
BspACI CCGC 1 cut(s) 135
BspANI GGCC 3 cut(s) 638, 655, 735
BspHI TCATGA 1 cut(s) 550
BspLI GGNNCC 2 cut(s) 612, 654
BspOI GCTAGC 1 cut(s) 177
BspPI GGATC 3 cut(s) 605, 618, 770
BspQI GCTCTTC 1 cut(s) 532
BsrFI RCCGGY 1 cut(s) 10
BsrI ACTGG 2 cut(s) 612, 790
BssAI RCCGGY 1 cut(s) 10
BssECI CCNNGG 1 cut(s) 808
BssMI GATC 2 cut(s) 610, 775
BssT1I CCWWGG 1 cut(s) 808
Bst2UI CCWGG 1 cut(s) 347
Bst4CI ACNGT 4 cut(s) 21, 363, 402, 437
Bst6I CTCTTC 3 cut(s) 133, 532, 567
BstC8I GCNNGC 3 cut(s) 12, 175, 372
BstDEI CTNAG 1 cut(s) 533
BstH2I RGCGCY 1 cut(s) 500
BstHHI GCGC 1 cut(s) 499
BstKTI GATC 2 cut(s) 613, 778
BstMBI GATC 2 cut(s) 610, 775
BstMWI GCNNNNNNNGC 1 cut(s) 635
BstNI CCWGG 1 cut(s) 347
BstSCI CCNGG 1 cut(s) 345
BstX2I RGATCY 2 cut(s) 610, 775
BstYI RGATCY 2 cut(s) 610, 775
BsuRI GGCC 3 cut(s) 638, 655, 735
BtsI GCAGTG 1 cut(s) 340
BtsIMutI CAGTG 4 cut(s) 340, 398, 442, 783
Cac8I GCNNGC 3 cut(s) 12, 175, 372
CciI TCATGA 1 cut(s) 550
CfoI GCGC 1 cut(s) 499
Cfr10I RCCGGY 1 cut(s) 10
Cfr13I GGNCC 2 cut(s) 653, 733
CseI GACGC 2 cut(s) 482, 739
CviAII CATG 1 cut(s) 551
DdeI CTNAG 1 cut(s) 533
DpnI GATC 2 cut(s) 612, 777
DpnII GATC 2 cut(s) 610, 775
DraI TTTAAA 2 cut(s) 432, 763
EaeI YGGCCR 1 cut(s) 636
Eam1104I CTCTTC 3 cut(s) 133, 532, 567
EarI CTCTTC 3 cut(s) 133, 532, 567
Eco130I CCWWGG 1 cut(s) 808
Eco47III AGCGCT 1 cut(s) 498
Eco57I CTGAAG 1 cut(s) 684
Eco88I CYCGRG 1 cut(s) 560
EcoRII CCWGG 1 cut(s) 345
EcoT14I CCWWGG 1 cut(s) 808
ErhI CCWWGG 1 cut(s) 808
FaeI CATG 1 cut(s) 554
FalI AAGNNNNNCTT 2 cut(s) 516, 548
FatI CATG 1 cut(s) 550
FblI GTMKAC 1 cut(s) 753
FspBI CTAG 3 cut(s) 174, 659, 814
GlaI GCGC 1 cut(s) 498
HaeII RGCGCY 1 cut(s) 500
HaeIII GGCC 3 cut(s) 638, 655, 735
HapII CCGG 1 cut(s) 11
HgaI GACGC 2 cut(s) 482, 739
HhaI GCGC 1 cut(s) 499
Hin1II CATG 1 cut(s) 554
Hin6I GCGC 1 cut(s) 497
HinP1I GCGC 1 cut(s) 497
HincII GTYRAC 1 cut(s) 754
HindII GTYRAC 1 cut(s) 754
HinfI GANTC 2 cut(s) 103, 269
HpaII CCGG 1 cut(s) 11
HphI GGTGA 1 cut(s) 36
Hpy166II GTNNAC 1 cut(s) 754
Hpy188I TCNGA 2 cut(s) 157, 252
Hpy188III TCNNGA 2 cut(s) 451, 551
Hpy8I GTNNAC 1 cut(s) 754
Hpy99I CGWCG 4 cut(s) 197, 200, 266, 755
HpyAV CCTTC 6 cut(s) 48, 68, 173, 308, 522, 624
HpyCH4III ACNGT 4 cut(s) 21, 363, 402, 437
HpyCH4IV ACGT 2 cut(s) 264, 415
HpyCH4V TGCA 4 cut(s) 4, 386, 440, 489
HpyF10VI GCNNNNNNNGC 1 cut(s) 635
HpyF3I CTNAG 1 cut(s) 533
HpySE526I ACGT 2 cut(s) 264, 415
Hsp92II CATG 1 cut(s) 554
HspAI GCGC 1 cut(s) 497
KroI GCCGGC 1 cut(s) 10
KroNI GCCGGC 1 cut(s) 12
Kzo9I GATC 2 cut(s) 610, 775
LguI GCTCTTC 1 cut(s) 532
LpnPI CCDG 6 cut(s) 24, 332, 359, 402, 593, 771
LweI GCATC 2 cut(s) 45, 139
MaeI CTAG 3 cut(s) 174, 659, 814
MaeII ACGT 2 cut(s) 264, 415
MalI GATC 2 cut(s) 612, 777
MboI GATC 2 cut(s) 610, 775
MboII GAAGA 8 cut(s) 33, 80, 83, 120, 302, 549, 584, 677
MflI RGATCY 2 cut(s) 610, 775
MlsI TGGCCA 1 cut(s) 638
MluCI AATT 3 cut(s) 309, 410, 455
MluNI TGGCCA 1 cut(s) 638
Mox20I TGGCCA 1 cut(s) 638
MreI CGCCGGCG 1 cut(s) 10
MroNI GCCGGC 1 cut(s) 10
MscI TGGCCA 1 cut(s) 638
MseI TTAA 2 cut(s) 431, 762
Msp20I TGGCCA 1 cut(s) 638
MspI CCGG 1 cut(s) 11
MspR9I CCNGG 1 cut(s) 347
Mva1269I GAATGC 2 cut(s) 92, 491
MvaI CCWGG 1 cut(s) 347
MwoI GCNNNNNNNGC 1 cut(s) 635
NaeI GCCGGC 1 cut(s) 12
NdeII GATC 2 cut(s) 610, 775
NgoMIV GCCGGC 1 cut(s) 10
NheI GCTAGC 1 cut(s) 173
NlaIII CATG 1 cut(s) 554
NlaIV GGNNCC 2 cut(s) 612, 654
PaeR7I CTCGAG 1 cut(s) 560
PagI TCATGA 1 cut(s) 550
PciSI GCTCTTC 1 cut(s) 532
PcsI WCGNNNNNNNCGW 1 cut(s) 261
PctI GAATGC 2 cut(s) 92, 491
PdiI GCCGGC 1 cut(s) 12
PfeI GAWTC 2 cut(s) 103, 269
PflFI GACNNNGTC 1 cut(s) 19
PflMI CCANNNNNTGG 1 cut(s) 785
Psp6I CCWGG 1 cut(s) 345
PspGI CCWGG 1 cut(s) 345
PspN4I GGNNCC 2 cut(s) 612, 654
PspPI GGNCC 2 cut(s) 653, 733
PspXI VCTCGAGB 1 cut(s) 560
PsuI RGATCY 2 cut(s) 610, 775
PsyI GACNNNGTC 1 cut(s) 19
SalI GTCGAC 1 cut(s) 752
SapI GCTCTTC 1 cut(s) 532
SaqAI TTAA 2 cut(s) 431, 762
Sau3AI GATC 2 cut(s) 610, 775
Sau96I GGNCC 2 cut(s) 653, 733
ScrFI CCNGG 1 cut(s) 347
SfaNI GCATC 2 cut(s) 45, 139
Sfr274I CTCGAG 1 cut(s) 560
SgrAI CRCCGGYG 1 cut(s) 10
SlaI CTCGAG 1 cut(s) 560
SmlI CTYRAG 1 cut(s) 560
SmoI CTYRAG 1 cut(s) 560
Sse9I AATT 3 cut(s) 309, 410, 455
SsiI CCGC 1 cut(s) 135
SspMI CTAG 3 cut(s) 174, 659, 814
StyD4I CCNGG 1 cut(s) 345
StyI CCWWGG 1 cut(s) 808
TaaI ACNGT 4 cut(s) 21, 363, 402, 437
TaiI ACGT 2 cut(s) 267, 418
TaqI TCGA 5 cut(s) 272, 408, 452, 561, 753
TasI AATT 3 cut(s) 309, 410, 455
TfiI GAWTC 2 cut(s) 103, 269
Tru1I TTAA 2 cut(s) 431, 762
Tru9I TTAA 2 cut(s) 431, 762
TscAI CASTG 4 cut(s) 340, 405, 442, 790
TspDTI ATGAA 8 cut(s) 99, 116, 504, 536, 567, 605, 698, 792
TspRI CASTG 4 cut(s) 340, 405, 442, 790
Tth111I GACNNNGTC 1 cut(s) 19
Van91I CCANNNNNTGG 1 cut(s) 785
XcmI CCANNNNNNNNNTGG 1 cut(s) 646
XhoI CTCGAG 1 cut(s) 560
XmiI GTMKAC 1 cut(s) 753
XspI CTAG 3 cut(s) 174, 659, 814
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.