pycom17g05990

Ninja-family protein AFP3-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Reverse (-)
4209146 .. 4212420
3275 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1152 bp
ATGATGACCCCACTCGCGGCGGCAATATTCCTTCAAGGAAACGAAACGGCCCCGACCCGACTCCCCAAGCGCCATCCACGTGTTCCTCCTGCAGAGGAGGAAGGCGGGAACAGAGCAACCCAGCAGGTGTTCCCAATGCAAGTGAGTACTTTTCCGAGAGATTTGTACGGAAAAATGGTTACCAGGAACGATTTTCCGGGGAAATTAGGGGAGCCGACCGGCGAGGATTCCGAGGAGATTGAGCTGAGCCTCGGGCTGTCTCTGAACGGTCGGTTCGGGGTGGACCCCGCCAGAGCCAAAACGGTGGCTCTGAAACGCTCGTCGTCAATATCTGATTTCGGTTTCACCCCGGCAAGAGAAGAAGAAACGAAGTGTCGTCTGTCCGCGCCGTTGCGCGCCGTGCCTCTGATGAGGACTTGTTCGCTTCCGACGGAGACAGAGGACGAGTGGAGGAAGCGGAAGGAGCTGCAGAGCTTGAGGAGAATGGAGGCAAAGAGGAAGAGGTCGGAGAAGCAGCTGAGGAACTTGAAGGTGCCGAGAGATCGGAGCCGAGAGAACGGCGGCGATGAGGAGAAGACGGGGGAGGTGGCGAATGGGGTTCATAGGAGAGAGCAGTTTGTGAAGGTTGTGGATGAGTTTAGAGCTATGGGGATGCCCAATTGTCCGCCACCACCGGCGACATCACAAGGAAGTGGCTCAACTGGGGTTTCGGAATCTGAGAGCCAAGCTGCTACTACATCTCAAGGAGTGCACACCGAAGCAAGAAGCCATGTCGATTCTCAATCTTCGCCAAAGACGGAGGATGAACTGTTAGCCACCCCGAGAATGATATCCGCTCAAAGATCTGGCCAGTTCAATGGCGTCCAAATGGAAATCAACTGTAATAAACCCCCAGTTCCAGAAAATGGTGCCAATGAAATTGTGAGGAATGTGTTGGAGAACATGCCGTGTGTGTCTACGACAGGAGATGGCCCTGACCGGAAAAGAATAGAAGGGTTTCTTTACAGATACAAGAAGGGTGAGGAGGTGAGGATATTGTGCGTTTGCCATGGCAGCTTTCTCTCGCCTGCGGAGTTTGTGAAGCATGCCGGCGGTGGTGACGTGGCGCACCCGTTGAAGCATATAGTGGTCAACCCTAGTCCGTTTTTGTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

384

Amino Acids

42.25

Weight (kDa)

8.62

Isoelectric Point (pI)

63.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EAR PF07897 75 - 112 3.8e-17 Ethylene-responsive binding factor-associated repression
NLS_NINJA_AFP PF16136 136 - 172 1.1e-20 Putative nuclear localisation signal in Ninja/AFP proteins
TDBD PF16135 344 - 377 1.8e-08 Tify domain binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 115
Acc36I ACCTGC 1 cut(s) 115
AccB1I GGYRCC 2 cut(s) 532, 908
AccB7I CCANNNNNTGG 1 cut(s) 905
AccBSI CCGCTC 1 cut(s) 836
AccI GTMKAC 1 cut(s) 956
AccII CGCG 3 cut(s) 17, 386, 396
AcoI YGGCCR 1 cut(s) 847
AcvI CACGTG 1 cut(s) 80
AcyI GRCGYC 1 cut(s) 861
AfaI GTAC 2 cut(s) 148, 167
AfiI CCNNNNNNNGG 2 cut(s) 16, 905
AflIII ACRYGT 1 cut(s) 79
AgsI TTSAA 4 cut(s) 35, 529, 856, 1117
AjiI CACGTC 1 cut(s) 1102
AjnI CCWGG 1 cut(s) 182
AluBI AGCT 7 cut(s) 244, 466, 474, 517, 644, 728, 1056
AluI AGCT 7 cut(s) 244, 466, 474, 517, 644, 728, 1056
Alw21I GWGCWC 1 cut(s) 753
Alw26I GTCTC 2 cut(s) 264, 428
Alw44I GTGCAC 1 cut(s) 749
Ama87I CYCGRG 2 cut(s) 251, 820
AoxI GGCC 3 cut(s) 48, 847, 970
ApaLI GTGCAC 1 cut(s) 749
ApeKI GCWGC 4 cut(s) 466, 514, 728, 1053
Asp700I GAANNNNTTC 1 cut(s) 996
AspLEI GCGC 5 cut(s) 72, 388, 396, 398, 1108
AspS9I GGNCC 3 cut(s) 49, 283, 971
AsuC2I CCSGG 2 cut(s) 198, 350
AsuHPI GGTGA 4 cut(s) 337, 1031, 1039, 1109
AvaI CYCGRG 2 cut(s) 251, 820
AvaII GGWCC 1 cut(s) 283
BaeGI GKGCMC 1 cut(s) 753
BalI TGGCCA 1 cut(s) 849
BanI GGYRCC 2 cut(s) 532, 908
BbrPI CACGTG 1 cut(s) 80
BbsI GAAGAC 1 cut(s) 581
Bbv12I GWGCWC 1 cut(s) 753
BbvCI CCTCAGC 1 cut(s) 518
BbvI GCAGC 4 cut(s) 453, 526, 715, 1065
BccI CCATC 2 cut(s) 81, 962
BceAI ACGGC 5 cut(s) 63, 373, 383, 574, 931
BciT130I CCWGG 1 cut(s) 184
BcnI CCSGG 2 cut(s) 198, 350
BcoDI GTCTC 2 cut(s) 264, 428
BfaI CTAG 1 cut(s) 1137
BfmI CTRYAG 2 cut(s) 90, 467
BfoI RGCGCY 1 cut(s) 73
BfuAI ACCTGC 1 cut(s) 115
BglII AGATCT 1 cut(s) 842
BisI GCNGC 7 cut(s) 18, 21, 467, 515, 562, 729, 1054
BlpI GCTNAGC 1 cut(s) 245
BlsI GCNGC 7 cut(s) 19, 22, 468, 516, 563, 730, 1055
BmcAI AGTACT 1 cut(s) 148
Bme1390I CCNGG 3 cut(s) 184, 198, 350
Bme18I GGWCC 1 cut(s) 283
BmeT110I CYCGRG 2 cut(s) 251, 820
BmgBI CACGTC 1 cut(s) 1102
BmgT120I GGNCC 3 cut(s) 49, 283, 971
BmiI GGNNCC 6 cut(s) 51, 213, 285, 534, 548, 910
BmrFI CCNGG 3 cut(s) 184, 198, 350
BmrI ACTGGG 2 cut(s) 711, 887
BmsI GCATC 1 cut(s) 642
BmuI ACTGGG 2 cut(s) 711, 887
BpiI GAAGAC 1 cut(s) 581
Bpu10I CCTNAGC 1 cut(s) 518
Bpu1102I GCTNAGC 1 cut(s) 245
BpuEI CTTGAG 2 cut(s) 496, 726
BpuMI CCSGG 2 cut(s) 198, 350
BsaAI YACGTR 1 cut(s) 80
BsaHI GRCGYC 1 cut(s) 861
BsaJI CCNNGG 5 cut(s) 197, 231, 250, 348, 1048
BsaWI WCCGGW 1 cut(s) 978
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 905
Bse118I RCCGGY 3 cut(s) 218, 673, 1088
Bse1I ACTGG 3 cut(s) 706, 850, 893
BseBI CCWGG 1 cut(s) 184
BseDI CCNNGG 5 cut(s) 197, 231, 250, 348, 1048
BseGI GGATG 4 cut(s) 73, 637, 657, 808
BseLI CCNNNNNNNGG 2 cut(s) 16, 905
BseMII CTCAG 3 cut(s) 236, 509, 708
BseNI ACTGG 3 cut(s) 706, 850, 893
BsePI GCGCGC 1 cut(s) 394
BseRI GAGGAG 5 cut(s) 110, 248, 493, 584, 1037
BseSI GKGCMC 1 cut(s) 753
BseXI GCAGC 4 cut(s) 453, 526, 715, 1065
BseYI CCCAGC 1 cut(s) 120
Bsh1236I CGCG 3 cut(s) 17, 386, 396
Bsh1285I CGRYCG 2 cut(s) 219, 271
BshFI GGCC 3 cut(s) 50, 849, 972
BshNI GGYRCC 2 cut(s) 532, 908
BsiEI CGRYCG 2 cut(s) 219, 271
BsiHKAI GWGCWC 1 cut(s) 753
BsiHKCI CYCGRG 2 cut(s) 251, 820
BsiSI CCGG 6 cut(s) 197, 219, 350, 674, 979, 1089
BslI CCNNNNNNNGG 2 cut(s) 16, 905
BsmAI GTCTC 2 cut(s) 264, 428
BsnI GGCC 3 cut(s) 50, 849, 972
BsoBI CYCGRG 2 cut(s) 251, 820
Bsp1286I GDGCHC 1 cut(s) 753
Bsp143I GATC 2 cut(s) 541, 842
Bsp1720I GCTNAGC 1 cut(s) 245
Bsp19I CCATGG 1 cut(s) 1048
BspANI GGCC 3 cut(s) 50, 849, 972
BspCNI CTCAG 3 cut(s) 237, 510, 709
BspFNI CGCG 3 cut(s) 17, 386, 396
BspLI GGNNCC 6 cut(s) 51, 213, 285, 534, 548, 910
BspMAI CTGCAG 2 cut(s) 94, 471
BspMI ACCTGC 1 cut(s) 115
BspT107I GGYRCC 2 cut(s) 532, 908
BsrBI CCGCTC 1 cut(s) 836
BsrFI RCCGGY 3 cut(s) 218, 673, 1088
BsrI ACTGG 3 cut(s) 706, 850, 893
BssAI RCCGGY 3 cut(s) 218, 673, 1088
BssECI CCNNGG 5 cut(s) 197, 231, 250, 348, 1048
BssHII GCGCGC 1 cut(s) 394
BssMI GATC 2 cut(s) 541, 842
BssNI GRCGYC 1 cut(s) 861
BssT1I CCWWGG 1 cut(s) 1048
Bst2UI CCWGG 1 cut(s) 184
Bst4CI ACNGT 4 cut(s) 269, 304, 810, 881
Bst6I CTCTTC 1 cut(s) 494
BstACI GRCGYC 1 cut(s) 861
BstBAI YACGTR 1 cut(s) 80
BstC8I GCNNGC 4 cut(s) 396, 1068, 1086, 1090
BstDEI CTNAG 3 cut(s) 245, 518, 717
BstDSI CCRYGG 1 cut(s) 1048
BstEII GGTNACC 1 cut(s) 178
BstF5I GGATG 4 cut(s) 73, 637, 657, 808
BstFNI CGCG 3 cut(s) 17, 386, 396
BstH2I RGCGCY 1 cut(s) 73
BstHHI GCGC 5 cut(s) 72, 388, 396, 398, 1108
BstKTI GATC 2 cut(s) 544, 845
BstMAI GTCTC 2 cut(s) 264, 428
BstMBI GATC 2 cut(s) 541, 842
BstMCI CGRYCG 2 cut(s) 219, 271
BstMWI GCNNNNNNNGC 3 cut(s) 400, 463, 1053
BstNI CCWGG 1 cut(s) 184
BstNSI RCATGY 2 cut(s) 946, 1088
BstPI GGTNACC 1 cut(s) 178
BstSCI CCNGG 3 cut(s) 182, 196, 348
BstSFI CTRYAG 2 cut(s) 90, 467
BstSLI GKGCMC 1 cut(s) 753
BstUI CGCG 3 cut(s) 17, 386, 396
BstV1I GCAGC 4 cut(s) 453, 526, 715, 1065
BstV2I GAAGAC 1 cut(s) 581
BstX2I RGATCY 1 cut(s) 842
BstXI CCANNNNNNTGG 2 cut(s) 304, 857
BstYI RGATCY 1 cut(s) 842
BsuRI GGCC 3 cut(s) 50, 849, 972
BtgI CCRYGG 1 cut(s) 1048
BtgZI GCGATG 1 cut(s) 579
BtrI CACGTC 1 cut(s) 1102
BtsCI GGATG 4 cut(s) 73, 637, 657, 808
BveI ACCTGC 1 cut(s) 115
Cac8I GCNNGC 4 cut(s) 396, 1068, 1086, 1090
CfoI GCGC 5 cut(s) 72, 388, 396, 398, 1108
Cfr10I RCCGGY 3 cut(s) 218, 673, 1088
Cfr13I GGNCC 3 cut(s) 49, 283, 971
CseI GACGC 1 cut(s) 850
Csp6I GTAC 2 cut(s) 147, 166
CviAII CATG 4 cut(s) 770, 943, 1049, 1085
CviQI GTAC 2 cut(s) 147, 166
DdeI CTNAG 3 cut(s) 245, 518, 717
DpnI GATC 2 cut(s) 543, 844
DpnII GATC 2 cut(s) 541, 842
EaeI YGGCCR 1 cut(s) 847
Eam1104I CTCTTC 1 cut(s) 494
EarI CTCTTC 1 cut(s) 494
EciI GGCGGA 1 cut(s) 654
Eco130I CCWWGG 1 cut(s) 1048
Eco32I GATATC 1 cut(s) 831
Eco47I GGWCC 1 cut(s) 283
Eco72I CACGTG 1 cut(s) 80
Eco88I CYCGRG 2 cut(s) 251, 820
Eco91I GGTNACC 1 cut(s) 178
EcoO65I GGTNACC 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 182
EcoRV GATATC 1 cut(s) 831
EcoT14I CCWWGG 1 cut(s) 1048
ErhI CCWWGG 1 cut(s) 1048
FaeI CATG 4 cut(s) 773, 946, 1052, 1088
FaiI YATR 8 cut(s) 603, 647, 771, 944, 1050, 1086, 1122, 1124
FalI AAGNNNNNCTT 2 cut(s) 984, 1016
FatI CATG 4 cut(s) 769, 942, 1048, 1084
FauI CCCGC 2 cut(s) 98, 295
FblI GTMKAC 1 cut(s) 956
Fnu4HI GCNGC 7 cut(s) 18, 21, 467, 515, 562, 729, 1054
FokI GGATG 4 cut(s) 60, 644, 664, 815
Fsp4HI GCNGC 7 cut(s) 18, 21, 467, 515, 562, 729, 1054
FspBI CTAG 1 cut(s) 1137
GlaI GCGC 5 cut(s) 71, 387, 395, 397, 1107
GluI GCNGC 7 cut(s) 18, 21, 467, 515, 562, 729, 1054
GsaI CCCAGC 1 cut(s) 124
HaeII RGCGCY 1 cut(s) 73
HaeIII GGCC 3 cut(s) 50, 849, 972
HapII CCGG 6 cut(s) 197, 219, 350, 674, 979, 1089
HgaI GACGC 1 cut(s) 850
HhaI GCGC 5 cut(s) 72, 388, 396, 398, 1108
Hin1I GRCGYC 1 cut(s) 861
Hin1II CATG 4 cut(s) 773, 946, 1052, 1088
Hin6I GCGC 5 cut(s) 70, 386, 394, 396, 1106
HinP1I GCGC 5 cut(s) 70, 386, 394, 396, 1106
HincII GTYRAC 1 cut(s) 1132
HindII GTYRAC 1 cut(s) 1132
HinfI GANTC 4 cut(s) 60, 227, 713, 776
HpaII CCGG 6 cut(s) 197, 219, 350, 674, 979, 1089
HphI GGTGA 4 cut(s) 337, 1031, 1039, 1109
Hpy166II GTNNAC 4 cut(s) 283, 751, 957, 1132
Hpy188III TCNNGA 1 cut(s) 899
Hpy8I GTNNAC 4 cut(s) 283, 751, 957, 1132
Hpy99I CGWCG 2 cut(s) 325, 433
HpyAV CCTTC 7 cut(s) 41, 95, 454, 523, 616, 986, 1009
HpyCH4III ACNGT 4 cut(s) 269, 304, 810, 881
HpyCH4IV ACGT 2 cut(s) 79, 1101
HpyCH4V TGCA 4 cut(s) 92, 139, 469, 751
HpyF10VI GCNNNNNNNGC 3 cut(s) 400, 463, 1053
HpyF3I CTNAG 3 cut(s) 245, 518, 717
HpySE526I ACGT 2 cut(s) 79, 1101
Hsp92I GRCGYC 1 cut(s) 861
Hsp92II CATG 4 cut(s) 773, 946, 1052, 1088
HspAI GCGC 5 cut(s) 70, 386, 394, 396, 1106
KroI GCCGGC 1 cut(s) 1088
KroNI GCCGGC 1 cut(s) 1090
Kzo9I GATC 2 cut(s) 541, 842
LmnI GCTCC 3 cut(s) 211, 463, 546
Lsp1109I GCAGC 4 cut(s) 453, 526, 715, 1065
LweI GCATC 1 cut(s) 642
MaeI CTAG 1 cut(s) 1137
MaeII ACGT 2 cut(s) 79, 1101
MaeIII GTNAC 2 cut(s) 178, 1097
MalI GATC 2 cut(s) 543, 844
MbiI CCGCTC 1 cut(s) 836
MboI GATC 2 cut(s) 541, 842
MboII GAAGA 5 cut(s) 371, 374, 511, 586, 777
MfeI CAATTG 1 cut(s) 658
MflI RGATCY 1 cut(s) 842
MhlI GDGCHC 1 cut(s) 753
MlsI TGGCCA 1 cut(s) 849
MluCI AATT 3 cut(s) 203, 658, 918
MluNI TGGCCA 1 cut(s) 849
MlyI GAGTC 1 cut(s) 54
MmeI TCCRAC 3 cut(s) 452, 486, 915
Mox20I TGGCCA 1 cut(s) 849
MroNI GCCGGC 1 cut(s) 1088
MroXI GAANNNNTTC 1 cut(s) 996
MscI TGGCCA 1 cut(s) 849
MslI CAYNNNNRTG 1 cut(s) 78
Msp20I TGGCCA 1 cut(s) 849
MspA1I CMGCKG 1 cut(s) 517
MspI CCGG 6 cut(s) 197, 219, 350, 674, 979, 1089
MspR9I CCNGG 3 cut(s) 184, 198, 350
MunI CAATTG 1 cut(s) 658
MvaI CCWGG 1 cut(s) 184
MvnI CGCG 3 cut(s) 17, 386, 396
MwoI GCNNNNNNNGC 3 cut(s) 400, 463, 1053
NaeI GCCGGC 1 cut(s) 1090
NciI CCSGG 2 cut(s) 198, 350
NcoI CCATGG 1 cut(s) 1048
NdeII GATC 2 cut(s) 541, 842
NgoMIV GCCGGC 1 cut(s) 1088
NlaIII CATG 4 cut(s) 773, 946, 1052, 1088
NlaIV GGNNCC 6 cut(s) 51, 213, 285, 534, 548, 910
NmeAIII GCCGAG 2 cut(s) 561, 575
NmuCI GTSAC 1 cut(s) 1097
NspI RCATGY 2 cut(s) 946, 1088
PaeI GCATGC 1 cut(s) 1088
PaqCI CACCTGC 1 cut(s) 115
PauI GCGCGC 1 cut(s) 394
PdiI GCCGGC 1 cut(s) 1090
PdmI GAANNNNTTC 1 cut(s) 996
PfeI GAWTC 3 cut(s) 227, 713, 776
PflMI CCANNNNNTGG 1 cut(s) 905
PkrI GCNGC 7 cut(s) 19, 22, 468, 516, 563, 730, 1055
PleI GAGTC 1 cut(s) 54
PmaCI CACGTG 1 cut(s) 80
PmlI CACGTG 1 cut(s) 80
PpsI GAGTC 1 cut(s) 54
Ppu21I YACGTR 1 cut(s) 80
Psp6I CCWGG 1 cut(s) 182
PspCI CACGTG 1 cut(s) 80
PspEI GGTNACC 1 cut(s) 178
PspFI CCCAGC 1 cut(s) 120
PspGI CCWGG 1 cut(s) 182
PspN4I GGNNCC 6 cut(s) 51, 213, 285, 534, 548, 910
PspPI GGNCC 3 cut(s) 49, 283, 971
PstI CTGCAG 2 cut(s) 94, 471
PsuI RGATCY 1 cut(s) 842
PteI GCGCGC 1 cut(s) 394
PvuII CAGCTG 1 cut(s) 517
RsaI GTAC 2 cut(s) 148, 167
RsaNI GTAC 2 cut(s) 147, 166
RseI CAYNNNNRTG 1 cut(s) 78
SatI GCNGC 7 cut(s) 18, 21, 467, 515, 562, 729, 1054
Sau3AI GATC 2 cut(s) 541, 842
Sau96I GGNCC 3 cut(s) 49, 283, 971
ScaI AGTACT 1 cut(s) 148
SchI GAGTC 1 cut(s) 54
ScrFI CCNGG 3 cut(s) 184, 198, 350
SduI GDGCHC 1 cut(s) 753
SfaNI GCATC 1 cut(s) 642
SfcI CTRYAG 2 cut(s) 90, 467
SgrAI CRCCGGYG 1 cut(s) 673
SinI GGWCC 1 cut(s) 283
SmiMI CAYNNNNRTG 1 cut(s) 78
SmlI CTYRAG 2 cut(s) 475, 741
SmoI CTYRAG 2 cut(s) 475, 741
SphI GCATGC 1 cut(s) 1088
Sse9I AATT 3 cut(s) 203, 658, 918
SspI AATATT 1 cut(s) 27
SspMI CTAG 1 cut(s) 1137
StyD4I CCNGG 3 cut(s) 182, 196, 348
StyI CCWWGG 1 cut(s) 1048
TaaI ACNGT 4 cut(s) 269, 304, 810, 881
TaiI ACGT 2 cut(s) 82, 1104
TaqI TCGA 1 cut(s) 774
TasI AATT 3 cut(s) 203, 658, 918
TatI WGTACW 1 cut(s) 146
TauI GCSGC 3 cut(s) 20, 23, 564
TfiI GAWTC 3 cut(s) 227, 713, 776
TseFI GTSAC 1 cut(s) 1097
TseI GCWGC 4 cut(s) 466, 514, 728, 1053
Tsp45I GTSAC 1 cut(s) 1097
TspDTI ATGAA 3 cut(s) 590, 819, 930
TspGWI ACGGA 4 cut(s) 183, 446, 812, 1131
Van91I CCANNNNNTGG 1 cut(s) 905
VneI GTGCAC 1 cut(s) 749
VpaK11BI GGWCC 1 cut(s) 283
XceI RCATGY 2 cut(s) 946, 1088
XmiI GTMKAC 1 cut(s) 956
XmnI GAANNNNTTC 1 cut(s) 996
XspI CTAG 1 cut(s) 1137
ZrmI AGTACT 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.