Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0003664

Physical Location & Seq

Genomic Coordinates Forward (+)

7889483 .. 7890449

Gene Structure 967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGCTTGCAGTCCTCTTGGAAAATGTGTTGGTTAATGACTGCTATACAAATAATTTATCAGGATGCCATGTTGAACAAAGAGTTTTCAAGGAGTTCCTGGATAAAAAGTGCCCGAGGATAGCGGCGCATTTGGAAGCAATGGAATTTGATGTCTCCCTTGTGGCCACCGAGTGGTTTCTATGCCTCTTTTCTAAGAGCTTGCCTTCTGAGACTACTCTAAGGGTATGGGATGTCCTTTTCTACGAGGGGGCTAAAGTTCTATTTCATGTCGCTTTGGCAATCTTTAAGATGAAGGAAGATGAGCTGCTTATAACCCATCATGTTGGTGATGTAATCAGTATTCTGCAGAAAACCACTCATCACCTATTTGATCCTGATGAGCTATTGACGGTGGCATTCGATCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030054 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0031410 GO:0031982 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045296 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0050839 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0097708 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

136

Amino Acids

15.54

Weight (kDa)

5.24

Isoelectric Point (pI)

26.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	2 - 103	4.1e-27	Rab-GTPase-TBC domain
RabGap-TBC_2	PF23436	2 - 123	5.6e-20	RabGAP TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07890 AT3G07890 AT3G07890 AT3G07890 AT3G07890
fragaria_vesca	FvH4_6g41560
malus_domestica	MD09G1118900.v1.1 MD17G1109700.v1.1
prunus_persica	Prupe.3G205400_v2.0.a1 Prupe.3G205400_v2.0.a1
pyrus_communis	pycom09g04380 pycom17g10190 pycom17g10200
rosa_chinensis	RchiOBHm_Chr2g0094461 RchiOBHm_Chr2g0157241
rosa_laevigata	RLG00000020974
rosa_multiflora	Rmu_co8061220.1_g000001 Rmu_co8315133.1_g000001 Rmu_sc0006282.1_g000005 Rmu_sc0038099.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092380
rosa_rugosa	Rorug02G0459000 Rorug02G0459100
rosa_samantha	Rh2AG092200 Rh2AG092300 Rh2AG524100 Rh2BG092500 Rh2BG538500 Rh2CG095000 Rh2CG508900 Rh2DG091300 Rh2DG547400 Rh7AG484800
rosa_wichuraiana	Rw2G043350 Rw2G043410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	311
AccB7I	CCANNNNNTGG	1 cut(s)	171
AciI	CCGC	1 cut(s)	122
AclWI	GGATC	1 cut(s)	365
AcoI	YGGCCR	1 cut(s)	162
AcsI	RAATTY	1 cut(s)	143
AdeI	CACNNNGTG	1 cut(s)	171
AfiI	CCNNNNNNNGG	1 cut(s)	171
AgsI	TTSAA	2 cut(s)	74, 88
AjnI	CCWGG	1 cut(s)	96
AluBI	AGCT	3 cut(s)	198, 304, 382
AluI	AGCT	3 cut(s)	198, 304, 382
Alw26I	GTCTC	2 cut(s)	157, 203
AlwI	GGATC	1 cut(s)	365
Ama87I	CYCGRG	1 cut(s)	112
AoxI	GGCC	1 cut(s)	162
ApeKI	GCWGC	1 cut(s)	304
ApoI	RAATTY	1 cut(s)	143
AspLEI	GCGC	1 cut(s)	127
AsuHPI	GGTGA	2 cut(s)	338, 353
AvaI	CYCGRG	1 cut(s)	112
BaeGI	GKGCMC	1 cut(s)	113
BalI	TGGCCA	1 cut(s)	164
BbvI	GCAGC	1 cut(s)	291
BccI	CCATC	1 cut(s)	324
BciT130I	CCWGG	1 cut(s)	98
BcoDI	GTCTC	2 cut(s)	157, 203
BfmI	CTRYAG	1 cut(s)	344
BisI	GCNGC	2 cut(s)	123, 305
BlsI	GCNGC	2 cut(s)	124, 306
Bme1390I	CCNGG	1 cut(s)	98
BmeT110I	CYCGRG	1 cut(s)	112
BmrFI	CCNGG	1 cut(s)	98
BmsI	GCATC	1 cut(s)	53
Bsa29I	ATCGAT	1 cut(s)	403
BsaJI	CCNNGG	1 cut(s)	113
Bsc4I	CCNNNNNNNGG	1 cut(s)	171
Bse3DI	GCAATG	1 cut(s)	144
BseBI	CCWGG	1 cut(s)	98
BseCI	ATCGAT	1 cut(s)	403
BseDI	CCNNGG	1 cut(s)	113
BseGI	GGATG	2 cut(s)	68, 235
BseLI	CCNNNNNNNGG	1 cut(s)	171
BseMI	GCAATG	1 cut(s)	144
BseMII	CTCAG	1 cut(s)	198
BseSI	GKGCMC	1 cut(s)	113
BseXI	GCAGC	1 cut(s)	291
Bsh1285I	CGRYCG	1 cut(s)	403
BshFI	GGCC	1 cut(s)	164
BshVI	ATCGAT	1 cut(s)	403
BsiEI	CGRYCG	1 cut(s)	403
BsiHKCI	CYCGRG	1 cut(s)	112
BslI	CCNNNNNNNGG	1 cut(s)	171
BsmAI	GTCTC	2 cut(s)	157, 203
BsmI	GAATGC	1 cut(s)	395
BsnI	GGCC	1 cut(s)	164
BsoBI	CYCGRG	1 cut(s)	112
Bsp1286I	GDGCHC	1 cut(s)	113
Bsp143I	GATC	2 cut(s)	370, 400
BspACI	CCGC	1 cut(s)	122
BspANI	GGCC	1 cut(s)	164
BspCNI	CTCAG	1 cut(s)	199
BspDI	ATCGAT	1 cut(s)	403
BspMAI	CTGCAG	1 cut(s)	348
BspPI	GGATC	1 cut(s)	365
BsrDI	GCAATG	1 cut(s)	144
BssECI	CCNNGG	1 cut(s)	113
BssMI	GATC	2 cut(s)	370, 400
Bst2UI	CCWGG	1 cut(s)	98
Bst4CI	ACNGT	1 cut(s)	391
BstC8I	GCNNGC	2 cut(s)	6, 200
BstDEI	CTNAG	3 cut(s)	192, 207, 218
BstF5I	GGATG	2 cut(s)	68, 235
BstHHI	GCGC	1 cut(s)	127
BstKTI	GATC	2 cut(s)	373, 403
BstMAI	GTCTC	2 cut(s)	157, 203
BstMBI	GATC	2 cut(s)	370, 400
BstMCI	CGRYCG	1 cut(s)	403
BstNI	CCWGG	1 cut(s)	98
BstSCI	CCNGG	1 cut(s)	96
BstSFI	CTRYAG	1 cut(s)	344
BstSLI	GKGCMC	1 cut(s)	113
BstV1I	GCAGC	1 cut(s)	291
BstXI	CCANNNNNNTGG	1 cut(s)	323
Bsu15I	ATCGAT	1 cut(s)	403
BsuRI	GGCC	1 cut(s)	164
BsuTUI	ATCGAT	1 cut(s)	403
BtsCI	GGATG	2 cut(s)	68, 235
Cac8I	GCNNGC	2 cut(s)	6, 200
CfoI	GCGC	1 cut(s)	127
ClaI	ATCGAT	1 cut(s)	403
CviAII	CATG	3 cut(s)	68, 266, 320
CviJI	RGCY	5 cut(s)	164, 198, 251, 304, 382
CviKI_1	RGCY	5 cut(s)	164, 198, 251, 304, 382
DdeI	CTNAG	3 cut(s)	192, 207, 218
DpnI	GATC	2 cut(s)	372, 402
DpnII	GATC	2 cut(s)	370, 400
DraIII	CACNNNGTG	1 cut(s)	171
EaeI	YGGCCR	1 cut(s)	162
Eco88I	CYCGRG	1 cut(s)	112
EcoRII	CCWGG	1 cut(s)	96
FaeI	CATG	3 cut(s)	71, 269, 323
FaiI	YATR	7 cut(s)	45, 69, 181, 226, 267, 311, 321
FatI	CATG	3 cut(s)	67, 265, 319
Fnu4HI	GCNGC	2 cut(s)	123, 305
FokI	GGATG	2 cut(s)	75, 242
Fsp4HI	GCNGC	2 cut(s)	123, 305
GlaI	GCGC	1 cut(s)	126
GluI	GCNGC	2 cut(s)	123, 305
HaeIII	GGCC	1 cut(s)	164
HhaI	GCGC	1 cut(s)	127
Hin1II	CATG	3 cut(s)	71, 269, 323
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HphI	GGTGA	2 cut(s)	338, 353
Hpy188I	TCNGA	1 cut(s)	208
Hpy188III	TCNNGA	2 cut(s)	60, 374
HpyAV	CCTTC	2 cut(s)	213, 286
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4V	TGCA	2 cut(s)	8, 346
HpyF3I	CTNAG	3 cut(s)	192, 207, 218
Hsp92II	CATG	3 cut(s)	71, 269, 323
HspAI	GCGC	1 cut(s)	125
Kzo9I	GATC	2 cut(s)	370, 400
LpnPI	CCDG	4 cut(s)	45, 83, 110, 387
Lsp1109I	GCAGC	1 cut(s)	291
LweI	GCATC	1 cut(s)	53
MalI	GATC	2 cut(s)	372, 402
MboI	GATC	2 cut(s)	370, 400
MboII	GAAGA	1 cut(s)	308
MhlI	GDGCHC	1 cut(s)	113
MlsI	TGGCCA	1 cut(s)	164
MluCI	AATT	2 cut(s)	52, 143
MluNI	TGGCCA	1 cut(s)	164
MnlI	CCTC	4 cut(s)	23, 108, 194, 238
Mox20I	TGGCCA	1 cut(s)	164
MscI	TGGCCA	1 cut(s)	164
MseI	TTAA	2 cut(s)	33, 285
MslI	CAYNNNNRTG	1 cut(s)	324
Msp20I	TGGCCA	1 cut(s)	164
MspR9I	CCNGG	1 cut(s)	98
Mva1269I	GAATGC	1 cut(s)	395
MvaI	CCWGG	1 cut(s)	98
NdeII	GATC	2 cut(s)	370, 400
NlaIII	CATG	3 cut(s)	71, 269, 323
PctI	GAATGC	1 cut(s)	395
PflMI	CCANNNNNTGG	1 cut(s)	171
PfoI	TCCNGGA	1 cut(s)	96
PkrI	GCNGC	2 cut(s)	124, 306
Ple19I	CGATCG	1 cut(s)	403
PsiI	TTATAA	1 cut(s)	311
Psp6I	CCWGG	1 cut(s)	96
PspGI	CCWGG	1 cut(s)	96
PstI	CTGCAG	1 cut(s)	348
PvuI	CGATCG	1 cut(s)	403
RseI	CAYNNNNRTG	1 cut(s)	324
SaqAI	TTAA	2 cut(s)	33, 285
SatI	GCNGC	2 cut(s)	123, 305
Sau3AI	GATC	2 cut(s)	370, 400
ScrFI	CCNGG	1 cut(s)	98
SduI	GDGCHC	1 cut(s)	113
SetI	ASST	4 cut(s)	200, 306, 366, 384
SfaNI	GCATC	1 cut(s)	53
SfcI	CTRYAG	1 cut(s)	344
SmiMI	CAYNNNNRTG	1 cut(s)	324
Sse9I	AATT	2 cut(s)	52, 143
SsiI	CCGC	1 cut(s)	122
StyD4I	CCNGG	1 cut(s)	96
TaaI	ACNGT	1 cut(s)	391
TaqI	TCGA	2 cut(s)	399, 403
TasI	AATT	2 cut(s)	52, 143
TauI	GCSGC	1 cut(s)	125
Tru1I	TTAA	2 cut(s)	33, 285
Tru9I	TTAA	2 cut(s)	33, 285
TseI	GCWGC	1 cut(s)	304
TspDTI	ATGAA	2 cut(s)	254, 305
Van91I	CCANNNNNTGG	1 cut(s)	171
XapI	RAATTY	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.