Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0003801

Physical Location & Seq

Genomic Coordinates Forward (+)

9818305 .. 9818712

Gene Structure 408 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGTGAAGTTTCTGAAGCCAAACAAGGCGGTGATCAACCTCCAGGGCCGCTACGCCGGGCGTAAGGCCGTCATCGTGCGCGCCTTCGACGAGGGCACCCGCGATCGTCCCTACGGCCACTGTTTGGTTGCGGGGATCAAGAAGTACCCCAGCAAGGTCATCCGCAAGGACTCCGCCAAGAAGACGGCCAAGAAATCCAGAGTGAAGGCCTTCGTCAAGCTCGTGAACTATCAGCACCTGATGCCCACCCGGTACACGCTGGATGTGGATCTCAAGGACGTCGTCAACGTCGAGTCTTTGCAGACCAAGGACAAGAAGGTCACTGCATTGAAGGAGGTGAAGAAGCGGTTCGAGGAGCGGTTCAAGACCGGGAAAAACAGGTGGTTCTTCACCAAGCTCAGGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0015934 GO:0016020 GO:0022625 GO:0022626 GO:0032991 GO:0042788 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW Ribosomal_L27e

Protein Analysis

136

Amino Acids

15.79

Weight (kDa)

10.47

Isoelectric Point (pI)

26.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L27e	PF01777	52 - 135	2.1e-33	Ribosomal L27e protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32220 AT3G22230 AT4G15000 AT4G15000
fragaria_vesca	FvH4_3g12210 FvH4_5g11610 FvH4_6g39630
malus_domestica	MD07G1202500.v1.1 MD09G1137700.v1.1 MD17G1128200.v1.1
prunus_persica	Prupe.3G187100_v2.0.a1 Prupe.4G110800_v2.0.a1
pyrus_communis	pycom17g12040
rosa_chinensis	RchiOBHm_Chr2g0153681 RchiOBHm_Chr5g0019991
rosa_laevigata	RLG00000020720 RLG00000032491
rosa_multiflora	Rmu_sc0000758.1_g000008 Rmu_sc0005310.1_g000009 Rmu_sc0005823.1_g000003
rosa_roxburghii	Rroxscaffold_1G00058200 Rroxscaffold_6G00402360
rosa_rugosa	Rorug02G0441300 Rorug05G0056100
rosa_samantha	Rh2AG504400 Rh2BG515100 Rh2CG490300 Rh2DG527200 Rh5BG145700 Rh5DG145200 Rh7CG324800 Rh7DG004200
rosa_wichuraiana	Rw2G041450 Rw5G012910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	317
AatII	GACGTC	1 cut(s)	282
AccB1I	GGYRCC	1 cut(s)	95
AccB7I	CCANNNNNTGG	1 cut(s)	124
AccBSI	CCGCTC	1 cut(s)	358
AccII	CGCG	2 cut(s)	81, 102
AciI	CCGC	8 cut(s)	29, 49, 100, 131, 163, 174, 346, 358
AclWI	GGATC	2 cut(s)	143, 276
AcoI	YGGCCR	2 cut(s)	115, 186
AcuI	CTGAAG	1 cut(s)	35
AcyI	GRCGYC	1 cut(s)	279
AfaI	GTAC	2 cut(s)	146, 254
AfiI	CCNNNNNNNGG	3 cut(s)	124, 154, 399
AgsI	TTSAA	2 cut(s)	331, 364
AjnI	CCWGG	1 cut(s)	42
AjuI	GAANNNNNNNTTGG	1 cut(s)	386
AluBI	AGCT	2 cut(s)	220, 397
AluI	AGCT	2 cut(s)	220, 397
AlwI	GGATC	2 cut(s)	143, 276
AlwNI	CAGNNNCTG	2 cut(s)	238, 405
AoxI	GGCC	5 cut(s)	46, 66, 115, 186, 207
Asp700I	GAANNNNTTC	2 cut(s)	209, 347
AspLEI	GCGC	2 cut(s)	81, 83
AspS9I	GGNCC	1 cut(s)	46
AsuC2I	CCSGG	3 cut(s)	58, 250, 370
AsuHPI	GGTGA	4 cut(s)	16, 43, 349, 382
BaeGI	GKGCMC	1 cut(s)	98
BanI	GGYRCC	1 cut(s)	95
BauI	CACGAG	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	188
BceAI	ACGGC	3 cut(s)	53, 130, 201
BciT130I	CCWGG	1 cut(s)	44
BclI	TGATCA	1 cut(s)	33
BcnI	CCSGG	3 cut(s)	58, 250, 370
BisI	GCNGC	1 cut(s)	49
BlsI	GCNGC	1 cut(s)	50
Bme1390I	CCNGG	4 cut(s)	44, 58, 250, 370
BmgT120I	GGNCC	1 cut(s)	46
BmiI	GGNNCC	1 cut(s)	97
BmrFI	CCNGG	4 cut(s)	44, 58, 250, 370
BmsI	GCATC	1 cut(s)	231
BpiI	GAAGAC	1 cut(s)	188
BpmI	CTGGAG	1 cut(s)	26
Bpu10I	CCTNAGC	1 cut(s)	398
BpuEI	CTTGAG	1 cut(s)	257
BpuMI	CCSGG	3 cut(s)	58, 250, 370
BsaBI	GATNNNNATC	1 cut(s)	267
BsaHI	GRCGYC	1 cut(s)	279
BsaJI	CCNNGG	2 cut(s)	43, 306
Bsc4I	CCNNNNNNNGG	3 cut(s)	124, 154, 399
Bse8I	GATNNNNATC	1 cut(s)	267
BseBI	CCWGG	1 cut(s)	44
BseDI	CCNNGG	2 cut(s)	43, 306
BseGI	GGATG	2 cut(s)	159, 268
BseJI	GATNNNNATC	1 cut(s)	267
BseLI	CCNNNNNNNGG	3 cut(s)	124, 154, 399
BsePI	GCGCGC	1 cut(s)	79
BseRI	GAGGAG	1 cut(s)	368
BseSI	GKGCMC	1 cut(s)	98
BseYI	CCCAGC	1 cut(s)	149
Bsh1236I	CGCG	2 cut(s)	81, 102
Bsh1285I	CGRYCG	1 cut(s)	106
BshFI	GGCC	5 cut(s)	48, 68, 117, 188, 209
BshNI	GGYRCC	1 cut(s)	95
BsiEI	CGRYCG	1 cut(s)	106
BsiSI	CCGG	3 cut(s)	57, 250, 369
BslFI	GGGAC	1 cut(s)	93
BslI	CCNNNNNNNGG	3 cut(s)	124, 154, 399
BsmFI	GGGAC	1 cut(s)	93
BsnI	GGCC	5 cut(s)	48, 68, 117, 188, 209
Bsp1286I	GDGCHC	1 cut(s)	98
Bsp143I	GATC	4 cut(s)	33, 103, 135, 268
BspACI	CCGC	8 cut(s)	29, 49, 100, 131, 163, 174, 346, 358
BspANI	GGCC	5 cut(s)	48, 68, 117, 188, 209
BspFNI	CGCG	2 cut(s)	81, 102
BspLI	GGNNCC	1 cut(s)	97
BspPI	GGATC	2 cut(s)	143, 276
BspT107I	GGYRCC	1 cut(s)	95
BsrBI	CCGCTC	1 cut(s)	358
BssECI	CCNNGG	2 cut(s)	43, 306
BssHII	GCGCGC	1 cut(s)	79
BssMI	GATC	4 cut(s)	33, 103, 135, 268
BssNI	GRCGYC	1 cut(s)	279
BssSI	CACGAG	1 cut(s)	221
BssT1I	CCWWGG	1 cut(s)	306
Bst2BI	CACGAG	1 cut(s)	221
Bst2UI	CCWGG	1 cut(s)	44
Bst4CI	ACNGT	1 cut(s)	122
BstACI	GRCGYC	1 cut(s)	279
BstAPI	GCANNNNNTGC	1 cut(s)	241
BstC8I	GCNNGC	1 cut(s)	81
BstDEI	CTNAG	1 cut(s)	398
BstF5I	GGATG	2 cut(s)	159, 268
BstFNI	CGCG	2 cut(s)	81, 102
BstHHI	GCGC	2 cut(s)	81, 83
BstKTI	GATC	4 cut(s)	36, 106, 138, 271
BstMBI	GATC	4 cut(s)	33, 103, 135, 268
BstMCI	CGRYCG	1 cut(s)	106
BstMWI	GCNNNNNNNGC	1 cut(s)	241
BstNI	CCWGG	1 cut(s)	44
BstSCI	CCNGG	4 cut(s)	42, 56, 248, 368
BstSLI	GKGCMC	1 cut(s)	98
BstUI	CGCG	2 cut(s)	81, 102
BstV2I	GAAGAC	1 cut(s)	188
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
BsuRI	GGCC	5 cut(s)	48, 68, 117, 188, 209
BtsCI	GGATG	2 cut(s)	159, 268
BtsI	GCAGTG	1 cut(s)	321
BtsIMutI	CAGTG	2 cut(s)	118, 321
Cac8I	GCNNGC	1 cut(s)	81
CaiI	CAGNNNCTG	2 cut(s)	238, 405
CfoI	GCGC	2 cut(s)	81, 83
Cfr13I	GGNCC	1 cut(s)	46
Csp6I	GTAC	2 cut(s)	145, 253
CviJI	RGCY	8 cut(s)	19, 48, 68, 117, 188, 209, 220, 397
CviKI_1	RGCY	8 cut(s)	19, 48, 68, 117, 188, 209, 220, 397
CviQI	GTAC	2 cut(s)	145, 253
DdeI	CTNAG	1 cut(s)	398
DpnI	GATC	4 cut(s)	35, 105, 137, 270
DpnII	GATC	4 cut(s)	33, 103, 135, 268
DrdI	GACNNNNNNGTC	1 cut(s)	317
DseDI	GACNNNNNNGTC	1 cut(s)	317
EaeI	YGGCCR	2 cut(s)	115, 186
EciI	GGCGGA	1 cut(s)	163
Eco130I	CCWWGG	1 cut(s)	306
Eco147I	AGGCCT	1 cut(s)	209
Eco57I	CTGAAG	1 cut(s)	35
EcoRII	CCWGG	1 cut(s)	42
EcoT14I	CCWWGG	1 cut(s)	306
ErhI	CCWWGG	1 cut(s)	306
FaqI	GGGAC	1 cut(s)	93
FauI	CCCGC	2 cut(s)	107, 124
FbaI	TGATCA	1 cut(s)	33
Fnu4HI	GCNGC	1 cut(s)	49
FokI	GGATG	2 cut(s)	146, 275
Fsp4HI	GCNGC	1 cut(s)	49
GlaI	GCGC	2 cut(s)	80, 82
GluI	GCNGC	1 cut(s)	49
GsaI	CCCAGC	1 cut(s)	153
GsuI	CTGGAG	1 cut(s)	26
HaeIII	GGCC	5 cut(s)	48, 68, 117, 188, 209
HapII	CCGG	3 cut(s)	57, 250, 369
HhaI	GCGC	2 cut(s)	81, 83
Hin1I	GRCGYC	1 cut(s)	279
Hin6I	GCGC	2 cut(s)	79, 81
HinP1I	GCGC	2 cut(s)	79, 81
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HinfI	GANTC	2 cut(s)	170, 293
HpaII	CCGG	3 cut(s)	57, 250, 369
HphI	GGTGA	4 cut(s)	16, 43, 349, 382
Hpy166II	GTNNAC	3 cut(s)	226, 255, 286
Hpy188I	TCNGA	2 cut(s)	15, 407
Hpy188III	TCNNGA	4 cut(s)	139, 198, 223, 364
Hpy8I	GTNNAC	3 cut(s)	226, 255, 286
Hpy99I	CGWCG	3 cut(s)	92, 284, 293
HpyAV	CCTTC	5 cut(s)	94, 199, 220, 310, 325
HpyCH4III	ACNGT	1 cut(s)	122
HpyCH4IV	ACGT	2 cut(s)	279, 288
HpyCH4V	TGCA	2 cut(s)	301, 326
HpyF10VI	GCNNNNNNNGC	1 cut(s)	241
HpyF3I	CTNAG	1 cut(s)	398
HpySE526I	ACGT	2 cut(s)	279, 288
Hsp92I	GRCGYC	1 cut(s)	279
HspAI	GCGC	2 cut(s)	79, 81
Ksp22I	TGATCA	1 cut(s)	33
Kzo9I	GATC	4 cut(s)	33, 103, 135, 268
LmnI	GCTCC	1 cut(s)	355
LweI	GCATC	1 cut(s)	231
MaeII	ACGT	2 cut(s)	279, 288
MaeIII	GTNAC	1 cut(s)	319
MalI	GATC	4 cut(s)	35, 105, 137, 270
MbiI	CCGCTC	1 cut(s)	358
MboI	GATC	4 cut(s)	33, 103, 135, 268
MboII	GAAGA	3 cut(s)	193, 352, 379
MflI	RGATCY	1 cut(s)	268
MhlI	GDGCHC	1 cut(s)	98
MlyI	GAGTC	2 cut(s)	164, 302
MnlI	CCTC	4 cut(s)	50, 85, 328, 346
MroXI	GAANNNNTTC	2 cut(s)	209, 347
MspI	CCGG	3 cut(s)	57, 250, 369
MspR9I	CCNGG	4 cut(s)	44, 58, 250, 370
MvaI	CCWGG	1 cut(s)	44
MvnI	CGCG	2 cut(s)	81, 102
MwoI	GCNNNNNNNGC	1 cut(s)	241
NciI	CCSGG	3 cut(s)	58, 250, 370
NdeII	GATC	4 cut(s)	33, 103, 135, 268
NlaIV	GGNNCC	1 cut(s)	97
NmuCI	GTSAC	1 cut(s)	319
PauI	GCGCGC	1 cut(s)	79
PceI	AGGCCT	1 cut(s)	209
PcsI	WCGNNNNNNNCGW	3 cut(s)	219, 285, 288
PdmI	GAANNNNTTC	2 cut(s)	209, 347
PflFI	GACNNNGTC	1 cut(s)	281
PflMI	CCANNNNNTGG	1 cut(s)	124
PkrI	GCNGC	1 cut(s)	50
Ple19I	CGATCG	1 cut(s)	106
PleI	GAGTC	2 cut(s)	164, 301
PpsI	GAGTC	2 cut(s)	164, 301
Psp6I	CCWGG	1 cut(s)	42
PspFI	CCCAGC	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	42
PspN4I	GGNNCC	1 cut(s)	97
PspPI	GGNCC	1 cut(s)	46
PstNI	CAGNNNCTG	2 cut(s)	238, 405
PsuI	RGATCY	1 cut(s)	268
PsyI	GACNNNGTC	1 cut(s)	281
PteI	GCGCGC	1 cut(s)	79
PvuI	CGATCG	1 cut(s)	106
RsaI	GTAC	2 cut(s)	146, 254
RsaNI	GTAC	2 cut(s)	145, 253
SatI	GCNGC	1 cut(s)	49
Sau3AI	GATC	4 cut(s)	33, 103, 135, 268
Sau96I	GGNCC	1 cut(s)	46
SchI	GAGTC	2 cut(s)	164, 302
ScrFI	CCNGG	4 cut(s)	44, 58, 250, 370
SduI	GDGCHC	1 cut(s)	98
SfaNI	GCATC	1 cut(s)	231
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
SseBI	AGGCCT	1 cut(s)	209
SsiI	CCGC	8 cut(s)	29, 49, 100, 131, 163, 174, 346, 358
StuI	AGGCCT	1 cut(s)	209
StyD4I	CCNGG	4 cut(s)	42, 56, 248, 368
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	1 cut(s)	122
TaiI	ACGT	2 cut(s)	282, 291
TaqI	TCGA	3 cut(s)	87, 291, 351
TauI	GCSGC	1 cut(s)	51
TscAI	CASTG	2 cut(s)	125, 328
TseFI	GTSAC	1 cut(s)	319
Tsp45I	GTSAC	1 cut(s)	319
TspRI	CASTG	2 cut(s)	125, 328
Tth111I	GACNNNGTC	1 cut(s)	281
Van91I	CCANNNNNTGG	1 cut(s)	124
XmnI	GAANNNNTTC	2 cut(s)	209, 347
ZraI	GACGTC	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.