Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001600

Physical Location & Seq

Genomic Coordinates Forward (+)

11047768 .. 11048733

Gene Structure 966 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGATAAGGAGGAGAATGCTGCTGGTGATGGTGATCATGAGGAGGCTTCACGGTATGCACGTGCTGTGGGTCCCGAAGAAGACATGGAAGAAGATGTTGAGGATGACGAAGATGAGGAGGTGGAGGAAGACATTGGGGATGAGGAAGAGAATGTTTTGAGTTTTATAGATGGGATTAATCCTTCAGATTTTGTGGAAGATGACGGTGACCAACTTTATCAGCGACTTCTGGGGACAGATTACGAGGCATTAGCTGAGAGAAAGAGAAAAGCACTTGTGGATAGCCGGCCCCAAGGTTCAGCTAAGAAGGCCAGGCAGGAGGATCTTACTGGAGCAAGCATGGAGGAAATAATGGAGGCCATGAATTATGGTATGCAAAGGCGATCAAGGAAGAATAAGAAAAGAGGTAGACGAAAAGGATCAATGAAGAAACTTACACCCGAGATTAATAGAATGCTTGGTGAAGCTAATCTTCACTATGCCTTTGGCCGGTTTGAAGAGGCTGTACCCATCTTGTCTGAAGTTGTAAGGAAAGCACCAGATTTGCCTGACTCGTATCATACACTTGGAATTATCCATGATAATCTTGGTAATGAATTGGATGCCTTGAATTGCCACAGAATTGCTGCATTTTTAGCACCCAGAGATCCAGCTCTTTGGGAACTGCTTTTTGACCGGTTCAATAAACTAGGTAACAGTCATGATGCTATTTATTGCCTTTCAAGAGCAATATCAGCAGATCCTGAAAATATGATTCTGAAATTTGATCGTGCTTCACTTTATGTTAAGCTTGGAGATTATCAGAAAGCTGCTGCGTCGTATGAACAGATAGTACAAGCCTGTCCTGATAATGTTGAAGCACTCAAGACGGGAGCAATGATGTATGAAACATGTGGTCAGCAAGAGCGTTCTATACAGATTCTGGAGGACTATCTCAGAAATCATCCAACTGAAGCTCGATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_19 TPR_6 TPR_7 TPR_8

Protein Analysis

322

Amino Acids

36.39

Weight (kDa)

4.66

Isoelectric Point (pI)

54.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_16	PF13432	229 - 284	7.1e-08	Tetratricopeptide repeat
TPR_9	PF13371	235 - 287	3.7e-07	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17680 AT1G17680 AT1G17680
fragaria_vesca	FvH4_2g25610 FvH4_6g37900 FvH4_6g37900 FvH4_6g37900 FvH4_6g37900 FvH4_6g37900 FvH4_6g38030 FvH4_6g38030 FvH4_6g38030 FvH4_6g38030 FvH4_6g38030 FvH4_6g38050
malus_domestica	MD09G1155000.v1.1 MD17G1140900.v1.1 MD17G1141000.v1.1 MD17G1141100.v1.1
prunus_persica	Prupe.8G070000_v2.0.a1
pyrus_communis	pycom09g07370 pycom09g07380 pycom17g13410 pycom17g13440
rosa_chinensis	RchiOBHm_Chr2g0151071 RchiOBHm_Chr2g0151101 RchiOBHm_Chr6g0293861
rosa_laevigata	RLG00000011917 RLG00000020527 RLG00000020529
rosa_multiflora	Rmu_co8508109.1_g000001 Rmu_ssc0000470.1_g000002
rosa_roxburghii	Rroxscaffold_2G00096730 Rroxscaffold_7G00173850
rosa_rugosa	Rorug02G0424200 Rorug02G0424300 Rorug02G0424400 Rorug02G0424500 Rorug06G0238400
rosa_samantha	Rh2AG484900 Rh2BG497200 Rh2CG471000 Rh2DG508100 Rh6AG352000 Rh6BG358800 Rh6CG366100 Rh6CG366200 Rh6DG352800
rosa_wichuraiana	Rw2G039740 Rw6G030630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	409
AclWI	GGATC	4 cut(s)	330, 427, 641, 734
AcoI	YGGCCR	1 cut(s)	487
AcsI	RAATTY	1 cut(s)	761
AcuI	CTGAAG	2 cut(s)	168, 540
AcvI	CACGTG	1 cut(s)	62
AfaI	GTAC	2 cut(s)	507, 834
AfiI	CCNNNNNNNGG	1 cut(s)	489
AflIII	ACRYGT	1 cut(s)	890
AgeI	ACCGGT	1 cut(s)	675
AgsI	TTSAA	5 cut(s)	497, 610, 682, 723, 857
AjnI	CCWGG	1 cut(s)	311
AluBI	AGCT	7 cut(s)	254, 302, 467, 653, 790, 809, 956
AluI	AGCT	7 cut(s)	254, 302, 467, 653, 790, 809, 956
AlwI	GGATC	4 cut(s)	330, 427, 641, 734
AlwNI	CAGNNNCTG	2 cut(s)	743, 922
Ama87I	CYCGRG	1 cut(s)	440
AoxI	GGCC	4 cut(s)	287, 309, 357, 487
ApeKI	GCWGC	4 cut(s)	20, 626, 809, 812
ApoI	RAATTY	1 cut(s)	761
AseI	ATTAAT	2 cut(s)	177, 447
AsiGI	ACCGGT	1 cut(s)	675
AspS9I	GGNCC	2 cut(s)	71, 288
AsuHPI	GGTGA	4 cut(s)	38, 44, 218, 473
AvaI	CYCGRG	1 cut(s)	440
AvaII	GGWCC	1 cut(s)	71
BarI	GAAGNNNNNNTAC	2 cut(s)	489, 521
BbrPI	CACGTG	1 cut(s)	62
BbsI	GAAGAC	2 cut(s)	87, 135
BbvI	GCAGC	4 cut(s)	7, 613, 796, 799
BccI	CCATC	3 cut(s)	23, 164, 518
BciT130I	CCWGG	1 cut(s)	313
BclI	TGATCA	1 cut(s)	34
BfaI	CTAG	1 cut(s)	689
BisI	GCNGC	4 cut(s)	21, 627, 810, 813
BlsI	GCNGC	4 cut(s)	22, 628, 811, 814
Bme1390I	CCNGG	1 cut(s)	313
Bme18I	GGWCC	1 cut(s)	71
BmeT110I	CYCGRG	1 cut(s)	440
BmgT120I	GGNCC	2 cut(s)	71, 288
BmiI	GGNNCC	3 cut(s)	72, 73, 290
BmrFI	CCNGG	1 cut(s)	313
BmsI	GCATC	2 cut(s)	592, 694
BpiI	GAAGAC	2 cut(s)	87, 135
BpmI	CTGGAG	2 cut(s)	351, 944
BpuEI	CTTGAG	1 cut(s)	848
BsaAI	YACGTR	1 cut(s)	62
BsaBI	GATNNNNATC	1 cut(s)	33
BsaJI	CCNNGG	1 cut(s)	292
BsaWI	WCCGGW	1 cut(s)	675
Bsc4I	CCNNNNNNNGG	1 cut(s)	489
Bse118I	RCCGGY	3 cut(s)	285, 489, 675
Bse1I	ACTGG	1 cut(s)	334
Bse3DI	GCAATG	1 cut(s)	882
Bse8I	GATNNNNATC	1 cut(s)	33
BseBI	CCWGG	1 cut(s)	313
BseDI	CCNNGG	1 cut(s)	292
BseGI	GGATG	4 cut(s)	109, 145, 607, 943
BseJI	GATNNNNATC	1 cut(s)	33
BseLI	CCNNNNNNNGG	1 cut(s)	489
BseMI	GCAATG	1 cut(s)	882
BseMII	CTCAG	2 cut(s)	246, 949
BseNI	ACTGG	1 cut(s)	334
BseRI	GAGGAG	3 cut(s)	26, 56, 131
BseXI	GCAGC	4 cut(s)	7, 613, 796, 799
BshFI	GGCC	4 cut(s)	289, 311, 359, 489
BshTI	ACCGGT	1 cut(s)	675
BsiHKCI	CYCGRG	1 cut(s)	440
BsiSI	CCGG	3 cut(s)	286, 490, 676
BslFI	GGGAC	2 cut(s)	57, 247
BslI	CCNNNNNNNGG	1 cut(s)	489
BsmFI	GGGAC	2 cut(s)	57, 247
BsmI	GAATGC	2 cut(s)	22, 459
BsnI	GGCC	4 cut(s)	289, 311, 359, 489
BsoBI	CYCGRG	1 cut(s)	440
Bsp143I	GATC	8 cut(s)	34, 322, 383, 419, 646, 739, 766, 959
BspANI	GGCC	4 cut(s)	289, 311, 359, 489
BspCNI	CTCAG	2 cut(s)	247, 948
BspHI	TCATGA	2 cut(s)	37, 700
BspLI	GGNNCC	3 cut(s)	72, 73, 290
BspPI	GGATC	4 cut(s)	330, 427, 641, 734
BsrDI	GCAATG	1 cut(s)	882
BsrFI	RCCGGY	3 cut(s)	285, 489, 675
BsrI	ACTGG	1 cut(s)	334
BssAI	RCCGGY	3 cut(s)	285, 489, 675
BssECI	CCNNGG	1 cut(s)	292
BssMI	GATC	8 cut(s)	34, 322, 383, 419, 646, 739, 766, 959
BssT1I	CCWWGG	1 cut(s)	292
Bst2UI	CCWGG	1 cut(s)	313
Bst4CI	ACNGT	3 cut(s)	54, 206, 698
Bst6I	CTCTTC	2 cut(s)	141, 492
BstBAI	YACGTR	1 cut(s)	62
BstC8I	GCNNGC	2 cut(s)	287, 337
BstDEI	CTNAG	4 cut(s)	255, 303, 935, 963
BstEII	GGTNACC	1 cut(s)	206
BstF5I	GGATG	4 cut(s)	109, 145, 607, 943
BstKTI	GATC	8 cut(s)	37, 325, 386, 422, 649, 742, 769, 962
BstMBI	GATC	8 cut(s)	34, 322, 383, 419, 646, 739, 766, 959
BstMWI	GCNNNNNNNGC	3 cut(s)	308, 635, 734
BstNI	CCWGG	1 cut(s)	313
BstNSI	RCATGY	1 cut(s)	894
BstPI	GGTNACC	1 cut(s)	206
BstSCI	CCNGG	1 cut(s)	311
BstV1I	GCAGC	4 cut(s)	7, 613, 796, 799
BstV2I	GAAGAC	2 cut(s)	87, 135
BstX2I	RGATCY	3 cut(s)	322, 646, 739
BstXI	CCANNNNNNTGG	1 cut(s)	657
BstYI	RGATCY	3 cut(s)	322, 646, 739
BsuRI	GGCC	4 cut(s)	289, 311, 359, 489
BtsCI	GGATG	4 cut(s)	109, 145, 607, 943
Cac8I	GCNNGC	2 cut(s)	287, 337
CaiI	CAGNNNCTG	2 cut(s)	743, 922
CciI	TCATGA	2 cut(s)	37, 700
Cfr10I	RCCGGY	3 cut(s)	285, 489, 675
Cfr13I	GGNCC	2 cut(s)	71, 288
CseI	GACGC	1 cut(s)	804
Csp6I	GTAC	2 cut(s)	506, 833
CspAI	ACCGGT	1 cut(s)	675
CviAII	CATG	7 cut(s)	38, 85, 340, 361, 578, 701, 891
CviQI	GTAC	2 cut(s)	506, 833
DdeI	CTNAG	4 cut(s)	255, 303, 935, 963
DpnI	GATC	8 cut(s)	36, 324, 385, 421, 648, 741, 768, 961
DpnII	GATC	8 cut(s)	34, 322, 383, 419, 646, 739, 766, 959
EaeI	YGGCCR	1 cut(s)	487
Eam1104I	CTCTTC	2 cut(s)	141, 492
EarI	CTCTTC	2 cut(s)	141, 492
Eco130I	CCWWGG	1 cut(s)	292
Eco47I	GGWCC	1 cut(s)	71
Eco57I	CTGAAG	2 cut(s)	168, 540
Eco72I	CACGTG	1 cut(s)	62
Eco88I	CYCGRG	1 cut(s)	440
Eco91I	GGTNACC	1 cut(s)	206
EcoO109I	RGGNCCY	1 cut(s)	71
EcoO65I	GGTNACC	1 cut(s)	206
EcoRII	CCWGG	1 cut(s)	311
EcoT14I	CCWWGG	1 cut(s)	292
ErhI	CCWWGG	1 cut(s)	292
FaeI	CATG	7 cut(s)	41, 88, 343, 364, 581, 704, 894
FalI	AAGNNNNNCTT	2 cut(s)	456, 488
FaqI	GGGAC	2 cut(s)	57, 247
FatI	CATG	7 cut(s)	37, 84, 339, 360, 577, 700, 890
FbaI	TGATCA	1 cut(s)	34
FblI	GTMKAC	1 cut(s)	409
Fnu4HI	GCNGC	4 cut(s)	21, 627, 810, 813
FokI	GGATG	4 cut(s)	116, 152, 614, 930
Fsp4HI	GCNGC	4 cut(s)	21, 627, 810, 813
FspBI	CTAG	1 cut(s)	689
GluI	GCNGC	4 cut(s)	21, 627, 810, 813
GsuI	CTGGAG	2 cut(s)	351, 944
HaeIII	GGCC	4 cut(s)	289, 311, 359, 489
HapII	CCGG	3 cut(s)	286, 490, 676
HgaI	GACGC	1 cut(s)	804
Hin1II	CATG	7 cut(s)	41, 88, 343, 364, 581, 704, 894
HindIII	AAGCTT	1 cut(s)	788
HinfI	GANTC	3 cut(s)	551, 754, 919
HpaII	CCGG	3 cut(s)	286, 490, 676
HphI	GGTGA	4 cut(s)	38, 44, 218, 473
Hpy166II	GTNNAC	1 cut(s)	410
Hpy188I	TCNGA	5 cut(s)	187, 520, 759, 804, 938
Hpy188III	TCNNGA	8 cut(s)	38, 74, 701, 723, 743, 845, 865, 923
Hpy8I	GTNNAC	1 cut(s)	410
Hpy99I	CGWCG	1 cut(s)	820
HpyAV	CCTTC	2 cut(s)	192, 301
HpyCH4III	ACNGT	3 cut(s)	54, 206, 698
HpyCH4IV	ACGT	1 cut(s)	61
HpyCH4V	TGCA	3 cut(s)	59, 376, 629
HpyF10VI	GCNNNNNNNGC	3 cut(s)	308, 635, 734
HpyF3I	CTNAG	4 cut(s)	255, 303, 935, 963
HpySE526I	ACGT	1 cut(s)	61
Hsp92II	CATG	7 cut(s)	41, 88, 343, 364, 581, 704, 894
KflI	GGGWCCC	1 cut(s)	71
KroI	GCCGGC	1 cut(s)	285
KroNI	GCCGGC	1 cut(s)	287
Ksp22I	TGATCA	1 cut(s)	34
Kzo9I	GATC	8 cut(s)	34, 322, 383, 419, 646, 739, 766, 959
LmnI	GCTCC	2 cut(s)	332, 872
Lsp1109I	GCAGC	4 cut(s)	7, 613, 796, 799
LweI	GCATC	2 cut(s)	592, 694
MaeI	CTAG	1 cut(s)	689
MaeII	ACGT	1 cut(s)	61
MaeIII	GTNAC	2 cut(s)	206, 692
MalI	GATC	8 cut(s)	36, 324, 385, 421, 648, 741, 768, 961
MboI	GATC	8 cut(s)	34, 322, 383, 419, 646, 739, 766, 959
MflI	RGATCY	3 cut(s)	322, 646, 739
MluCI	AATT	6 cut(s)	364, 570, 596, 610, 621, 761
MlyI	GAGTC	1 cut(s)	545
MroNI	GCCGGC	1 cut(s)	285
MseI	TTAA	3 cut(s)	177, 447, 786
MspI	CCGG	3 cut(s)	286, 490, 676
MspR9I	CCNGG	1 cut(s)	313
Mva1269I	GAATGC	2 cut(s)	22, 459
MvaI	CCWGG	1 cut(s)	313
MwoI	GCNNNNNNNGC	3 cut(s)	308, 635, 734
NaeI	GCCGGC	1 cut(s)	287
NdeII	GATC	8 cut(s)	34, 322, 383, 419, 646, 739, 766, 959
NgoMIV	GCCGGC	1 cut(s)	285
NlaIII	CATG	7 cut(s)	41, 88, 343, 364, 581, 704, 894
NlaIV	GGNNCC	3 cut(s)	72, 73, 290
NmuCI	GTSAC	1 cut(s)	206
NspI	RCATGY	1 cut(s)	894
PagI	TCATGA	2 cut(s)	37, 700
PciI	ACATGT	1 cut(s)	890
PcsI	WCGNNNNNNNCGW	1 cut(s)	58
PctI	GAATGC	2 cut(s)	22, 459
PdiI	GCCGGC	1 cut(s)	287
PfeI	GAWTC	2 cut(s)	754, 919
PinAI	ACCGGT	1 cut(s)	675
PkrI	GCNGC	4 cut(s)	22, 628, 811, 814
PleI	GAGTC	1 cut(s)	545
PmaCI	CACGTG	1 cut(s)	62
PmlI	CACGTG	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	545
Ppu21I	YACGTR	1 cut(s)	62
PpuMI	RGGWCCY	1 cut(s)	71
PscI	ACATGT	1 cut(s)	890
PshBI	ATTAAT	2 cut(s)	177, 447
Psp5II	RGGWCCY	1 cut(s)	71
Psp6I	CCWGG	1 cut(s)	311
PspCI	CACGTG	1 cut(s)	62
PspEI	GGTNACC	1 cut(s)	206
PspGI	CCWGG	1 cut(s)	311
PspN4I	GGNNCC	3 cut(s)	72, 73, 290
PspPI	GGNCC	2 cut(s)	71, 288
PspPPI	RGGWCCY	1 cut(s)	71
PsrI	GAACNNNNNNTAC	2 cut(s)	816, 848
PstNI	CAGNNNCTG	2 cut(s)	743, 922
PsuI	RGATCY	3 cut(s)	322, 646, 739
RsaI	GTAC	2 cut(s)	507, 834
RsaNI	GTAC	2 cut(s)	506, 833
SaqAI	TTAA	3 cut(s)	177, 447, 786
SatI	GCNGC	4 cut(s)	21, 627, 810, 813
Sau3AI	GATC	8 cut(s)	34, 322, 383, 419, 646, 739, 766, 959
Sau96I	GGNCC	2 cut(s)	71, 288
SchI	GAGTC	1 cut(s)	545
ScrFI	CCNGG	1 cut(s)	313
SfaNI	GCATC	2 cut(s)	592, 694
SinI	GGWCC	1 cut(s)	71
SmlI	CTYRAG	1 cut(s)	863
SmoI	CTYRAG	1 cut(s)	863
Sse9I	AATT	6 cut(s)	364, 570, 596, 610, 621, 761
SspMI	CTAG	1 cut(s)	689
StyD4I	CCNGG	1 cut(s)	311
StyI	CCWWGG	1 cut(s)	292
TaaI	ACNGT	3 cut(s)	54, 206, 698
TaiI	ACGT	1 cut(s)	64
TaqI	TCGA	1 cut(s)	958
TasI	AATT	6 cut(s)	364, 570, 596, 610, 621, 761
TatI	WGTACW	1 cut(s)	832
TfiI	GAWTC	2 cut(s)	754, 919
Tru1I	TTAA	3 cut(s)	177, 447, 786
Tru9I	TTAA	3 cut(s)	177, 447, 786
TseFI	GTSAC	1 cut(s)	206
TseI	GCWGC	4 cut(s)	20, 626, 809, 812
Tsp45I	GTSAC	1 cut(s)	206
TspDTI	ATGAA	5 cut(s)	377, 440, 609, 837, 900
VpaK11BI	GGWCC	1 cut(s)	71
VspI	ATTAAT	2 cut(s)	177, 447
XapI	RAATTY	1 cut(s)	761
XceI	RCATGY	1 cut(s)	894
XcmI	CCANNNNNNNNNTGG	1 cut(s)	584
XmiI	GTMKAC	1 cut(s)	409
XspI	CTAG	1 cut(s)	689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.