pycom17g19320

Clavaminate synthase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0005847
Physical Location & Seq
Reverse (-)
17149502 .. 17150875
1374 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 972 bp
ATGATGAGAAATGTCAAATTGAACCTAGACAATTTCGGACCTGAAAGACCCACCCAACACAGCTCCATATTATTTCACTCCCTAACCCAGTTCACCAACTCACCCCGACACTGCAAACCGGCGCGTCAAACCACTTGCCACCCCATACCAGAGAGGCAGCATGGCTGGTACCTTGGTGGAAACCCGAATTTCACAGCAGAAGCTCAACGGCGAAAGCCAATTCCCGCTAGTTATATCTTCGCCTCCTGCATCACCAAAACCATCGAAGCCGAAAAACCCTATGTGGGCGGGGCCGCTCCTCGGACCAACGTCATGGGTCGGGTTTTTATCGCCAACGAGTCCCCCGCCCGACCAGAAGATTCCATCCCACCACGAAATGGCTCAGGTATGCTCTCATTGCACGGCGCCTGTGGTGTGGTGCTGGAGTACCCATCCAAGTTGTTTTTCTTCTGTGAAGTGGAGCCTGGAAGTGGGGGAGAAACTCCGATTGTTCTGCGCCACATTGTGTACGAGAGGATGATAGAGAAGTACCCGGAGTTCGTTGACAAGTTGGAGGAGCACGGGTTGTTATATAACCGGGTTTTGGGGGAAGACGACAATTCTTCTTCTCCAATCGGCCGTGGCTGGAAGTCCACCTTCTTGACCAAAGACGAGGCTGCTAAGCTTGGCATGAAGTTAGAATGGTTGGATGATGGAGTGAAGTCAATCATGGGACCAATCCCTGCCATCAAATTTAACAGCACAACGCAGCGCAAGATTTGGTTCAACAGCATGGTGGCAGGCGTCACTTTTGGAGATGGCAGCCCATTGCCGGCGGATATCATCCACGACTGCTTCAAAGTTCTTGAAGAGGAAAGCGTTGCCTTCCCTTGGAGCAGAGCCGATGTTGTAGTACTCGATAACTTGGCTGTCCTTCACTCCCGGAAATCGTTCACTCCACCTCGCAGCTCTGCAAATAGTTTAGGTCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TauD

Protein Analysis

324

Amino Acids

35.88

Weight (kDa)

7.68

Isoelectric Point (pI)

40.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TauD PF02668 133 - 315 1.1e-15 Taurine catabolism dioxygenase TauD, TfdA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 168
AccB1I GGYRCC 2 cut(s) 168, 404
AccB7I CCANNNNNTGG 1 cut(s) 377
AccBSI CCGCTC 1 cut(s) 296
AccII CGCG 1 cut(s) 124
AciI CCGC 5 cut(s) 225, 288, 294, 345, 815
AcoI YGGCCR 1 cut(s) 616
AcsI RAATTY 2 cut(s) 187, 731
AcyI GRCGYC 2 cut(s) 405, 783
AdeI CACNNNGTG 1 cut(s) 505
AfaI GTAC 5 cut(s) 170, 428, 509, 530, 894
AfiI CCNNNNNNNGG 7 cut(s) 284, 300, 377, 470, 583, 811, 870
AgsI TTSAA 4 cut(s) 22, 766, 838, 848
AjnI CCWGG 1 cut(s) 463
AjuI GAANNNNNNNTTGG 2 cut(s) 428, 460
AluBI AGCT 4 cut(s) 63, 203, 664, 948
AluI AGCT 4 cut(s) 63, 203, 664, 948
Alw21I GWGCWC 1 cut(s) 561
AoxI GGCC 2 cut(s) 291, 616
ApeKI GCWGC 5 cut(s) 157, 656, 748, 801, 945
ApoI RAATTY 2 cut(s) 187, 731
Asp700I GAANNNNTTC 1 cut(s) 929
Asp718I GGTACC 1 cut(s) 168
AspLEI GCGC 4 cut(s) 124, 407, 498, 753
AspS9I GGNCC 4 cut(s) 38, 291, 303, 713
AsuC2I CCSGG 3 cut(s) 533, 578, 922
AsuHPI GGTGA 3 cut(s) 85, 93, 244
AvaII GGWCC 3 cut(s) 38, 303, 713
BaeI ACNNNNGTAYC 2 cut(s) 160, 193
BanI GGYRCC 2 cut(s) 168, 404
BbsI GAAGAC 1 cut(s) 597
Bbv12I GWGCWC 1 cut(s) 561
BbvI GCAGC 5 cut(s) 169, 643, 760, 813, 957
BccI CCATC 6 cut(s) 269, 371, 439, 686, 734, 791
BceAI ACGGC 3 cut(s) 224, 418, 603
BcgI CGANNNNNNTGC 2 cut(s) 475, 509
BciT130I CCWGG 1 cut(s) 465
BcnI CCSGG 3 cut(s) 533, 578, 922
BfaI CTAG 2 cut(s) 26, 228
BfmI CTRYAG 1 cut(s) 968
BfoI RGCGCY 1 cut(s) 408
BisI GCNGC 6 cut(s) 158, 294, 657, 749, 802, 946
BlpI GCTNAGC 1 cut(s) 660
BlsI GCNGC 6 cut(s) 159, 295, 658, 750, 803, 947
BmcAI AGTACT 1 cut(s) 894
Bme1390I CCNGG 4 cut(s) 465, 533, 578, 922
Bme18I GGWCC 3 cut(s) 38, 303, 713
BmgT120I GGNCC 4 cut(s) 38, 291, 303, 713
BmiI GGNNCC 5 cut(s) 170, 292, 406, 462, 714
BmrFI CCNGG 4 cut(s) 465, 533, 578, 922
BmrI ACTGGG 1 cut(s) 82
BmsI GCATC 1 cut(s) 258
BmuI ACTGGG 1 cut(s) 82
BoxI GACNNNNGTC 1 cut(s) 308
BpiI GAAGAC 1 cut(s) 597
BpmI CTGGAG 1 cut(s) 443
Bpu10I CCTNAGC 1 cut(s) 382
Bpu1102I GCTNAGC 1 cut(s) 660
BpuMI CCSGG 3 cut(s) 533, 578, 922
BsaHI GRCGYC 2 cut(s) 405, 783
BsaJI CCNNGG 4 cut(s) 172, 299, 619, 869
BsaXI ACNNNNNCTCC 2 cut(s) 548, 578
Bsc4I CCNNNNNNNGG 7 cut(s) 284, 300, 377, 470, 583, 811, 870
Bse118I RCCGGY 2 cut(s) 118, 811
Bse1I ACTGG 1 cut(s) 88
Bse3DI GCAATG 2 cut(s) 395, 806
BseBI CCWGG 1 cut(s) 465
BseDI CCNNGG 4 cut(s) 172, 299, 619, 869
BseGI GGATG 5 cut(s) 363, 431, 522, 694, 822
BseLI CCNNNNNNNGG 7 cut(s) 284, 300, 377, 470, 583, 811, 870
BseMI GCAATG 2 cut(s) 395, 806
BseMII CTCAG 1 cut(s) 396
BseNI ACTGG 1 cut(s) 88
BseRI GAGGAG 2 cut(s) 288, 569
BseX3I CGGCCG 1 cut(s) 616
BseXI GCAGC 5 cut(s) 169, 643, 760, 813, 957
Bsh1236I CGCG 1 cut(s) 124
Bsh1285I CGRYCG 1 cut(s) 619
BshFI GGCC 2 cut(s) 293, 618
BshNI GGYRCC 2 cut(s) 168, 404
BsiEI CGRYCG 1 cut(s) 619
BsiHKAI GWGCWC 1 cut(s) 561
BsiSI CCGG 5 cut(s) 119, 533, 577, 812, 922
BslFI GGGAC 2 cut(s) 325, 726
BslI CCNNNNNNNGG 7 cut(s) 284, 300, 377, 470, 583, 811, 870
BsmFI GGGAC 2 cut(s) 325, 726
BsnI GGCC 2 cut(s) 293, 618
Bsp1286I GDGCHC 1 cut(s) 561
Bsp1720I GCTNAGC 1 cut(s) 660
BspACI CCGC 5 cut(s) 225, 288, 294, 345, 815
BspANI GGCC 2 cut(s) 293, 618
BspCNI CTCAG 1 cut(s) 395
BspFNI CGCG 1 cut(s) 124
BspLI GGNNCC 5 cut(s) 170, 292, 406, 462, 714
BspT107I GGYRCC 2 cut(s) 168, 404
BsrBI CCGCTC 1 cut(s) 296
BsrDI GCAATG 2 cut(s) 395, 806
BsrFI RCCGGY 2 cut(s) 118, 811
BsrI ACTGG 1 cut(s) 88
BssAI RCCGGY 2 cut(s) 118, 811
BssECI CCNNGG 4 cut(s) 172, 299, 619, 869
BssNI GRCGYC 2 cut(s) 405, 783
BssT1I CCWWGG 2 cut(s) 172, 869
Bst2UI CCWGG 1 cut(s) 465
Bst6I CTCTTC 1 cut(s) 843
BstACI GRCGYC 2 cut(s) 405, 783
BstC8I GCNNGC 2 cut(s) 781, 813
BstDEI CTNAG 2 cut(s) 382, 660
BstDSI CCRYGG 1 cut(s) 619
BstF5I GGATG 5 cut(s) 363, 431, 522, 694, 822
BstFNI CGCG 1 cut(s) 124
BstH2I RGCGCY 1 cut(s) 408
BstHHI GCGC 4 cut(s) 124, 407, 498, 753
BstMCI CGRYCG 1 cut(s) 619
BstMWI GCNNNNNNNGC 1 cut(s) 397
BstNI CCWGG 1 cut(s) 465
BstPAI GACNNNNGTC 1 cut(s) 308
BstSCI CCNGG 4 cut(s) 463, 531, 576, 920
BstSFI CTRYAG 1 cut(s) 968
BstUI CGCG 1 cut(s) 124
BstV1I GCAGC 5 cut(s) 169, 643, 760, 813, 957
BstV2I GAAGAC 1 cut(s) 597
BstXI CCANNNNNNTGG 1 cut(s) 313
BstZI CGGCCG 1 cut(s) 616
BsuRI GGCC 2 cut(s) 293, 618
BtgI CCRYGG 1 cut(s) 619
BtsCI GGATG 5 cut(s) 363, 431, 522, 694, 822
BtsI GCAGTG 1 cut(s) 109
BtsIMutI CAGTG 1 cut(s) 109
Cac8I GCNNGC 2 cut(s) 781, 813
CfoI GCGC 4 cut(s) 124, 407, 498, 753
Cfr10I RCCGGY 2 cut(s) 118, 811
Cfr13I GGNCC 4 cut(s) 38, 291, 303, 713
CseI GACGC 2 cut(s) 113, 772
Csp6I GTAC 5 cut(s) 169, 427, 508, 529, 893
CviAII CATG 5 cut(s) 161, 313, 670, 709, 772
CviQI GTAC 5 cut(s) 169, 427, 508, 529, 893
DdeI CTNAG 2 cut(s) 382, 660
DinI GGCGCC 1 cut(s) 406
DraIII CACNNNGTG 1 cut(s) 505
EaeI YGGCCR 1 cut(s) 616
EagI CGGCCG 1 cut(s) 616
Eam1104I CTCTTC 1 cut(s) 843
EarI CTCTTC 1 cut(s) 843
EciI GGCGGA 1 cut(s) 830
EclXI CGGCCG 1 cut(s) 616
Eco130I CCWWGG 2 cut(s) 172, 869
Eco32I GATATC 1 cut(s) 820
Eco47I GGWCC 3 cut(s) 38, 303, 713
Eco52I CGGCCG 1 cut(s) 616
EcoRII CCWGG 1 cut(s) 463
EcoRV GATATC 1 cut(s) 820
EcoT14I CCWWGG 2 cut(s) 172, 869
EgeI GGCGCC 1 cut(s) 406
EheI GGCGCC 1 cut(s) 406
ErhI CCWWGG 2 cut(s) 172, 869
FaeI CATG 5 cut(s) 164, 316, 673, 712, 775
FalI AAGNNNNNCTT 2 cut(s) 620, 652
FaqI GGGAC 2 cut(s) 325, 726
FatI CATG 5 cut(s) 160, 312, 669, 708, 771
FauI CCCGC 3 cut(s) 232, 281, 352
Fnu4HI GCNGC 6 cut(s) 158, 294, 657, 749, 802, 946
FokI GGATG 5 cut(s) 350, 418, 529, 701, 809
Fsp4HI GCNGC 6 cut(s) 158, 294, 657, 749, 802, 946
FspBI CTAG 2 cut(s) 26, 228
GlaI GCGC 4 cut(s) 123, 406, 497, 752
GluI GCNGC 6 cut(s) 158, 294, 657, 749, 802, 946
GsuI CTGGAG 1 cut(s) 443
HaeII RGCGCY 1 cut(s) 408
HaeIII GGCC 2 cut(s) 293, 618
HapII CCGG 5 cut(s) 119, 533, 577, 812, 922
HgaI GACGC 2 cut(s) 113, 772
HhaI GCGC 4 cut(s) 124, 407, 498, 753
Hin1I GRCGYC 2 cut(s) 405, 783
Hin1II CATG 5 cut(s) 164, 316, 673, 712, 775
Hin6I GCGC 4 cut(s) 122, 405, 496, 751
HinP1I GCGC 4 cut(s) 122, 405, 496, 751
HincII GTYRAC 1 cut(s) 544
HindII GTYRAC 1 cut(s) 544
HindIII AAGCTT 1 cut(s) 662
HinfI GANTC 2 cut(s) 338, 359
HpaII CCGG 5 cut(s) 119, 533, 577, 812, 922
HphI GGTGA 3 cut(s) 85, 93, 244
Hpy166II GTNNAC 5 cut(s) 93, 508, 544, 633, 933
Hpy188I TCNGA 3 cut(s) 38, 303, 486
Hpy188III TCNNGA 2 cut(s) 640, 845
Hpy8I GTNNAC 5 cut(s) 93, 508, 544, 633, 933
HpyAV CCTTC 3 cut(s) 646, 874, 923
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 4 cut(s) 114, 249, 400, 953
HpyF10VI GCNNNNNNNGC 1 cut(s) 397
HpyF3I CTNAG 2 cut(s) 382, 660
HpySE526I ACGT 1 cut(s) 309
Hsp92I GRCGYC 2 cut(s) 405, 783
Hsp92II CATG 5 cut(s) 164, 316, 673, 712, 775
HspAI GCGC 4 cut(s) 122, 405, 496, 751
KasI GGCGCC 1 cut(s) 404
KpnI GGTACC 1 cut(s) 172
KroI GCCGGC 1 cut(s) 811
KroNI GCCGGC 1 cut(s) 813
LmnI GCTCC 5 cut(s) 68, 301, 460, 556, 873
Lsp1109I GCAGC 5 cut(s) 169, 643, 760, 813, 957
LweI GCATC 1 cut(s) 258
MaeI CTAG 2 cut(s) 26, 228
MaeII ACGT 1 cut(s) 309
MaeIII GTNAC 1 cut(s) 784
MbiI CCGCTC 1 cut(s) 296
MboII GAAGA 7 cut(s) 229, 368, 439, 594, 597, 602, 860
MhlI GDGCHC 1 cut(s) 561
MluCI AATT 6 cut(s) 17, 31, 187, 219, 598, 731
Mly113I GGCGCC 1 cut(s) 405
MlyI GAGTC 1 cut(s) 347
MmeI TCCRAC 2 cut(s) 531, 666
MnlI CCTC 8 cut(s) 147, 253, 309, 507, 547, 646, 844, 951
MroNI GCCGGC 1 cut(s) 811
MroXI GAANNNNTTC 1 cut(s) 929
MseI TTAA 1 cut(s) 735
MspI CCGG 5 cut(s) 119, 533, 577, 812, 922
MspR9I CCNGG 4 cut(s) 465, 533, 578, 922
MvaI CCWGG 1 cut(s) 465
MvnI CGCG 1 cut(s) 124
MwoI GCNNNNNNNGC 1 cut(s) 397
NaeI GCCGGC 1 cut(s) 813
NarI GGCGCC 1 cut(s) 405
NciI CCSGG 3 cut(s) 533, 578, 922
NgoMIV GCCGGC 1 cut(s) 811
NlaIII CATG 5 cut(s) 164, 316, 673, 712, 775
NlaIV GGNNCC 5 cut(s) 170, 292, 406, 462, 714
NmuCI GTSAC 1 cut(s) 784
PdiI GCCGGC 1 cut(s) 813
PdmI GAANNNNTTC 1 cut(s) 929
PfeI GAWTC 1 cut(s) 359
PflMI CCANNNNNTGG 1 cut(s) 377
PfoI TCCNGGA 1 cut(s) 920
PkrI GCNGC 6 cut(s) 159, 295, 658, 750, 803, 947
PleI GAGTC 1 cut(s) 346
PluTI GGCGCC 1 cut(s) 408
PpsI GAGTC 1 cut(s) 346
PshAI GACNNNNGTC 1 cut(s) 308
Psp6I CCWGG 1 cut(s) 463
PspGI CCWGG 1 cut(s) 463
PspN4I GGNNCC 5 cut(s) 170, 292, 406, 462, 714
PspPI GGNCC 4 cut(s) 38, 291, 303, 713
PsrI GAACNNNNNNTAC 2 cut(s) 521, 553
RsaI GTAC 5 cut(s) 170, 428, 509, 530, 894
RsaNI GTAC 5 cut(s) 169, 427, 508, 529, 893
SaqAI TTAA 1 cut(s) 735
SatI GCNGC 6 cut(s) 158, 294, 657, 749, 802, 946
Sau96I GGNCC 4 cut(s) 38, 291, 303, 713
ScaI AGTACT 1 cut(s) 894
SchI GAGTC 1 cut(s) 347
ScrFI CCNGG 4 cut(s) 465, 533, 578, 922
SduI GDGCHC 1 cut(s) 561
SfaNI GCATC 1 cut(s) 258
SfcI CTRYAG 1 cut(s) 968
SfoI GGCGCC 1 cut(s) 406
SinI GGWCC 3 cut(s) 38, 303, 713
Sse9I AATT 6 cut(s) 17, 31, 187, 219, 598, 731
SsiI CCGC 5 cut(s) 225, 288, 294, 345, 815
SspDI GGCGCC 1 cut(s) 404
SspMI CTAG 2 cut(s) 26, 228
StyD4I CCNGG 4 cut(s) 463, 531, 576, 920
StyI CCWWGG 2 cut(s) 172, 869
TaiI ACGT 1 cut(s) 312
TaqI TCGA 2 cut(s) 264, 897
TasI AATT 6 cut(s) 17, 31, 187, 219, 598, 731
TatI WGTACW 1 cut(s) 892
TauI GCSGC 1 cut(s) 296
TfiI GAWTC 1 cut(s) 359
Tru1I TTAA 1 cut(s) 735
Tru9I TTAA 1 cut(s) 735
TscAI CASTG 1 cut(s) 116
TseFI GTSAC 1 cut(s) 784
TseI GCWGC 5 cut(s) 157, 656, 748, 801, 945
Tsp45I GTSAC 1 cut(s) 784
TspDTI ATGAA 1 cut(s) 686
TspRI CASTG 1 cut(s) 116
Van91I CCANNNNNTGG 1 cut(s) 377
VpaK11BI GGWCC 3 cut(s) 38, 303, 713
XapI RAATTY 2 cut(s) 187, 731
XmnI GAANNNNTTC 1 cut(s) 929
XspI CTAG 2 cut(s) 26, 228
ZrmI AGTACT 1 cut(s) 894
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.