Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002967

Physical Location & Seq

Genomic Coordinates Forward (+)

18641686 .. 18643406

Gene Structure 1721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGCCTGCAAGACTCTCTGATGCCTTCAAATCCCACCCTGTCAACCTCCAACTCAAACACCCAGATTTCAACTCATTACATGAATTGCCAGACTCCTATGCATGGACAAACAATGATGATCACTACCCATCTTCCCTAAGCTCATTTGGGGTAGACGATTCTGTTCCGGTCATCGATCTCTCCGAACCCAATGCTCTTAAGCTCACAGGCCATGCATGTAAGACTTGGGGAGTCTTCCAAGTCACTAACCATGGCATCCCACAGAAGCTTCTTGATGACATTGAGTCCGCAGGCAAAAGCCTTTTCTCTCTGCCAGTCGAGCAGAAGCTCAAAGCCGCCCGACCGCCGGACGGCATTTCAGGCTATGGTTTTGCTCGGATATCTTCGTTTTTTAGGAAGCTCATGTGGTCTGAGGGCAATATCATTGAGGAATATGAGAAGGAAATGAAAAGGCTTGCTGGGAGGTTGATGTGGCTTATGCTTGGCTCACTAGGCATATCCCCGGAAGATGTAAAGTGGGCTGGCTCGAAAGGTGAATTCAAAGGTGCATCAGCTGCCTTACAATTGAATTCTTACCCGGCTTGCCCAGAGCCAGATCGGGCCATGGGTTTGGCTGCACATACGGATTCTACCCTCCTCACAATCCTCTACCAAAACAATACTAGTGGTTTGCAAGTGCTTCGAGACGGCACCGGATGGGTCACGGTTCCACCAATGCCCGGTGCTTTGGTGGTCAATGTTGGTGATCTCATCCATATATTATCTAACGGGGTGTACCCAAGTGTCCTTCATCGGGCTGTAGTTAATCGCACCCAACATCGTCTATCCATCGCTTACTTATTCGGTCCCCCGGCTAGTGTCCAAATCTCACCCCTATCAAAATTAGTTGGTCCAAGTCATCCTCCTCTCTACCGGCCAATTACTTGGAATGAGTACCTTGGCACCAAAGCAAAACATTTCAATAAGGCACTTTCATCGGTCAGACTTTGTGCTCCTCTAAGTTCATTAGCAGATGTAAATGATCATAACAGCGTAAAAGTCGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010114 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

349

Amino Acids

38.05

Weight (kDa)

7.79

Isoelectric Point (pI)

39.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	55 - 146	2.7e-20	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	185 - 283	4.5e-34	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15550 AT1G80340
fragaria_vesca	FvH4_6g30780
malus_domestica	MD02G1263100.v1.1 MD02G1263200.v1.1 MD07G1054800.v1.1 MD09G1217400.v1.1 MD17G1199100.v1.1
prunus_persica	Prupe.2G061700_v2.0.a1 Prupe.3G075600_v2.0.a1
pyrus_communis	pycom07g04260 pycom09g13440 pycom17g20380
rosa_chinensis	RchiOBHm_Chr2g0137231 RchiOBHm_Chr7g0236321
rosa_laevigata	RLG00000001086 RLG00000019636
rosa_multiflora	Rmu_co8273963.1_g000001 Rmu_sc0000894.1_g000034 Rmu_sc0001441.1_g000006 Rmu_sc0009898.1_g000005 Rmu_sc0029248.1_g000002
rosa_roxburghii	Rroxscaffold_2G00107310 Rroxscaffold_3G00225230
rosa_rugosa	Rorug02G0339700 Rorug07G0295900 Rorug07G0296000
rosa_samantha	Rh2AG388500 Rh2BG396100 Rh2CG375900 Rh2DG411200 Rh7AG450800 Rh7BG422300 Rh7CG470400 Rh7CG470500 Rh7DG439800
rosa_wichuraiana	Rw2G031830 Rw7G037480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	689, 941
AccI	GTMKAC	1 cut(s)	153
AciI	CCGC	3 cut(s)	288, 336, 344
AcoI	YGGCCR	1 cut(s)	914
AcsI	RAATTY	2 cut(s)	536, 568
AfaI	GTAC	2 cut(s)	776, 935
AfiI	CCNNNNNNNGG	5 cut(s)	102, 346, 350, 719, 793
AflII	CTTAAG	1 cut(s)	197
AgsI	TTSAA	5 cut(s)	28, 70, 541, 568, 961
AhdI	GACNNNNNGTC	1 cut(s)	283
AhlI	ACTAGT	1 cut(s)	662
AluBI	AGCT	6 cut(s)	141, 202, 268, 328, 400, 554
AluI	AGCT	6 cut(s)	141, 202, 268, 328, 400, 554
Alw21I	GWGCWC	1 cut(s)	994
Alw26I	GTCTC	1 cut(s)	678
AoxI	GGCC	3 cut(s)	208, 600, 914
ApeKI	GCWGC	2 cut(s)	554, 614
ApoI	RAATTY	2 cut(s)	536, 568
AspS9I	GGNCC	3 cut(s)	600, 845, 890
AsuC2I	CCSGG	4 cut(s)	503, 578, 720, 851
AsuHPI	GGTGA	3 cut(s)	545, 755, 861
AvaII	GGWCC	2 cut(s)	845, 890
BanI	GGYRCC	2 cut(s)	689, 941
BbsI	GAAGAC	1 cut(s)	226
Bbv12I	GWGCWC	1 cut(s)	994
BbvI	GCAGC	2 cut(s)	541, 601
BccI	CCATC	3 cut(s)	136, 690, 836
BceAI	ACGGC	2 cut(s)	367, 703
BcgI	CGANNNNNNTGC	6 cut(s)	173, 207, 662, 696, 957, 991
BclI	TGATCA	2 cut(s)	118, 1021
BcnI	CCSGG	4 cut(s)	503, 578, 720, 851
BcoDI	GTCTC	1 cut(s)	678
BcuI	ACTAGT	1 cut(s)	662
BfaI	CTAG	4 cut(s)	491, 663, 855, 1045
BfmI	CTRYAG	1 cut(s)	798
BfrI	CTTAAG	1 cut(s)	197
BisI	GCNGC	3 cut(s)	336, 555, 615
BlsI	GCNGC	3 cut(s)	337, 556, 616
Bme1390I	CCNGG	4 cut(s)	503, 578, 720, 851
Bme18I	GGWCC	2 cut(s)	845, 890
BmeRI	GACNNNNNGTC	1 cut(s)	283
BmgT120I	GGNCC	3 cut(s)	600, 845, 890
BmiI	GGNNCC	4 cut(s)	691, 708, 847, 943
BmrFI	CCNGG	4 cut(s)	503, 578, 720, 851
BmsI	GCATC	3 cut(s)	10, 264, 557
BpiI	GAAGAC	1 cut(s)	226
Bpu10I	CCTNAGC	1 cut(s)	137
BpuMI	CCSGG	4 cut(s)	503, 578, 720, 851
Bsa29I	ATCGAT	1 cut(s)	174
BsaJI	CCNNGG	5 cut(s)	250, 501, 603, 849, 937
BsaWI	WCCGGW	2 cut(s)	166, 692
Bsc4I	CCNNNNNNNGG	5 cut(s)	102, 346, 350, 719, 793
Bse118I	RCCGGY	1 cut(s)	912
Bse1I	ACTGG	1 cut(s)	314
BseCI	ATCGAT	1 cut(s)	174
BseDI	CCNNGG	5 cut(s)	250, 501, 603, 849, 937
BseGI	GGATG	4 cut(s)	255, 701, 750, 898
BseLI	CCNNNNNNNGG	5 cut(s)	102, 346, 350, 719, 793
BseMII	CTCAG	1 cut(s)	402
BseNI	ACTGG	1 cut(s)	314
BseRI	GAGGAG	3 cut(s)	626, 894, 984
BseXI	GCAGC	2 cut(s)	541, 601
BseYI	CCCAGC	1 cut(s)	458
BsgI	GTGCAG	1 cut(s)	600
Bsh1285I	CGRYCG	1 cut(s)	344
BshFI	GGCC	3 cut(s)	210, 602, 916
BshNI	GGYRCC	2 cut(s)	689, 941
BshVI	ATCGAT	1 cut(s)	174
BsiEI	CGRYCG	1 cut(s)	344
BsiHKAI	GWGCWC	1 cut(s)	994
BsiSI	CCGG	8 cut(s)	167, 347, 503, 578, 693, 720, 851, 913
BslFI	GGGAC	1 cut(s)	831
BslI	CCNNNNNNNGG	5 cut(s)	102, 346, 350, 719, 793
BsmAI	GTCTC	1 cut(s)	678
BsmBI	CGTCTC	1 cut(s)	678
BsmFI	GGGAC	1 cut(s)	831
BsnI	GGCC	3 cut(s)	210, 602, 916
Bsp1286I	GDGCHC	1 cut(s)	994
Bsp143I	GATC	5 cut(s)	118, 175, 595, 745, 1021
Bsp19I	CCATGG	2 cut(s)	250, 603
BspACI	CCGC	3 cut(s)	288, 336, 344
BspANI	GGCC	3 cut(s)	210, 602, 916
BspCNI	CTCAG	1 cut(s)	403
BspDI	ATCGAT	1 cut(s)	174
BspLI	GGNNCC	4 cut(s)	691, 708, 847, 943
BspT107I	GGYRCC	2 cut(s)	689, 941
BspTI	CTTAAG	1 cut(s)	197
BsrFI	RCCGGY	1 cut(s)	912
BsrI	ACTGG	1 cut(s)	314
BssAI	RCCGGY	1 cut(s)	912
BssECI	CCNNGG	5 cut(s)	250, 501, 603, 849, 937
BssMI	GATC	5 cut(s)	118, 175, 595, 745, 1021
BssT1I	CCWWGG	3 cut(s)	250, 603, 937
Bst4CI	ACNGT	1 cut(s)	706
BstAFI	CTTAAG	1 cut(s)	197
BstAPI	GCANNNNNTGC	1 cut(s)	554
BstC8I	GCNNGC	5 cut(s)	6, 292, 456, 523, 583
BstDEI	CTNAG	3 cut(s)	137, 411, 998
BstDSI	CCRYGG	2 cut(s)	250, 603
BstF5I	GGATG	4 cut(s)	255, 701, 750, 898
BstKTI	GATC	5 cut(s)	121, 178, 598, 748, 1024
BstMAI	GTCTC	1 cut(s)	678
BstMBI	GATC	5 cut(s)	118, 175, 595, 745, 1021
BstMCI	CGRYCG	1 cut(s)	344
BstMWI	GCNNNNNNNGC	4 cut(s)	319, 360, 492, 554
BstNSI	RCATGY	1 cut(s)	219
BstSCI	CCNGG	4 cut(s)	501, 576, 718, 849
BstSFI	CTRYAG	1 cut(s)	798
BstV1I	GCAGC	2 cut(s)	541, 601
BstV2I	GAAGAC	1 cut(s)	226
BstXI	CCANNNNNNTGG	2 cut(s)	610, 924
Bsu15I	ATCGAT	1 cut(s)	174
BsuRI	GGCC	3 cut(s)	210, 602, 916
BsuTUI	ATCGAT	1 cut(s)	174
BtgI	CCRYGG	2 cut(s)	250, 603
BtgZI	GCGATG	1 cut(s)	814
BtsCI	GGATG	4 cut(s)	255, 701, 750, 898
Cac8I	GCNNGC	5 cut(s)	6, 292, 456, 523, 583
Cfr10I	RCCGGY	1 cut(s)	912
Cfr13I	GGNCC	3 cut(s)	600, 845, 890
ClaI	ATCGAT	1 cut(s)	174
Csp6I	GTAC	2 cut(s)	775, 934
CspCI	CAANNNNNGTGG	2 cut(s)	646, 681
CviAII	CATG	7 cut(s)	80, 102, 212, 216, 251, 403, 604
CviQI	GTAC	2 cut(s)	775, 934
DdeI	CTNAG	3 cut(s)	137, 411, 998
DpnI	GATC	5 cut(s)	120, 177, 597, 747, 1023
DpnII	GATC	5 cut(s)	118, 175, 595, 745, 1021
DriI	GACNNNNNGTC	1 cut(s)	283
EaeI	YGGCCR	1 cut(s)	914
Eam1105I	GACNNNNNGTC	1 cut(s)	283
Eco130I	CCWWGG	3 cut(s)	250, 603, 937
Eco32I	GATATC	1 cut(s)	381
Eco47I	GGWCC	2 cut(s)	845, 890
EcoRI	GAATTC	2 cut(s)	536, 568
EcoRV	GATATC	1 cut(s)	381
EcoT14I	CCWWGG	3 cut(s)	250, 603, 937
EcoT22I	ATGCAT	2 cut(s)	103, 217
ErhI	CCWWGG	3 cut(s)	250, 603, 937
Esp3I	CGTCTC	1 cut(s)	678
FaeI	CATG	7 cut(s)	83, 105, 215, 219, 254, 406, 607
FaqI	GGGAC	1 cut(s)	831
FatI	CATG	7 cut(s)	79, 101, 211, 215, 250, 402, 603
FbaI	TGATCA	2 cut(s)	118, 1021
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	3 cut(s)	336, 555, 615
FokI	GGATG	4 cut(s)	242, 708, 737, 885
Fsp4HI	GCNGC	3 cut(s)	336, 555, 615
FspBI	CTAG	4 cut(s)	491, 663, 855, 1045
GluI	GCNGC	3 cut(s)	336, 555, 615
GsaI	CCCAGC	1 cut(s)	462
HaeIII	GGCC	3 cut(s)	210, 602, 916
HapII	CCGG	8 cut(s)	167, 347, 503, 578, 693, 720, 851, 913
Hin1II	CATG	7 cut(s)	83, 105, 215, 219, 254, 406, 607
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HindIII	AAGCTT	1 cut(s)	266
HinfI	GANTC	6 cut(s)	12, 92, 158, 231, 284, 626
HpaII	CCGG	8 cut(s)	167, 347, 503, 578, 693, 720, 851, 913
HphI	GGTGA	3 cut(s)	545, 755, 861
Hpy166II	GTNNAC	3 cut(s)	43, 154, 775
Hpy188I	TCNGA	5 cut(s)	19, 184, 378, 412, 983
Hpy188III	TCNNGA	2 cut(s)	272, 683
Hpy8I	GTNNAC	3 cut(s)	43, 154, 775
HpyAV	CCTTC	3 cut(s)	34, 433, 797
HpyCH4III	ACNGT	1 cut(s)	706
HpyCH4V	TGCA	6 cut(s)	8, 101, 215, 548, 617, 673
HpyF10VI	GCNNNNNNNGC	4 cut(s)	319, 360, 492, 554
HpyF3I	CTNAG	3 cut(s)	137, 411, 998
Hsp92II	CATG	7 cut(s)	83, 105, 215, 219, 254, 406, 607
Ksp22I	TGATCA	2 cut(s)	118, 1021
Kzo9I	GATC	5 cut(s)	118, 175, 595, 745, 1021
LmnI	GCTCC	1 cut(s)	997
Lsp1109I	GCAGC	2 cut(s)	541, 601
LweI	GCATC	3 cut(s)	10, 264, 557
MaeI	CTAG	4 cut(s)	491, 663, 855, 1045
MaeIII	GTNAC	2 cut(s)	241, 700
MalI	GATC	5 cut(s)	120, 177, 597, 747, 1023
MboI	GATC	5 cut(s)	118, 175, 595, 745, 1021
MboII	GAAGA	4 cut(s)	123, 226, 375, 518
MfeI	CAATTG	1 cut(s)	563
MhlI	GDGCHC	1 cut(s)	994
MluCI	AATT	6 cut(s)	83, 536, 563, 568, 881, 918
MlyI	GAGTC	4 cut(s)	6, 86, 240, 293
MmeI	TCCRAC	1 cut(s)	73
Mph1103I	ATGCAT	2 cut(s)	103, 217
MseI	TTAA	2 cut(s)	198, 804
MspA1I	CMGCKG	1 cut(s)	554
MspCI	CTTAAG	1 cut(s)	197
MspI	CCGG	8 cut(s)	167, 347, 503, 578, 693, 720, 851, 913
MspR9I	CCNGG	4 cut(s)	503, 578, 720, 851
MunI	CAATTG	1 cut(s)	563
MwoI	GCNNNNNNNGC	4 cut(s)	319, 360, 492, 554
NciI	CCSGG	4 cut(s)	503, 578, 720, 851
NcoI	CCATGG	2 cut(s)	250, 603
NdeII	GATC	5 cut(s)	118, 175, 595, 745, 1021
NlaIII	CATG	7 cut(s)	83, 105, 215, 219, 254, 406, 607
NlaIV	GGNNCC	4 cut(s)	691, 708, 847, 943
NmuCI	GTSAC	2 cut(s)	241, 700
NsiI	ATGCAT	2 cut(s)	103, 217
NspI	RCATGY	1 cut(s)	219
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PfeI	GAWTC	2 cut(s)	158, 626
PkrI	GCNGC	3 cut(s)	337, 556, 616
PleI	GAGTC	4 cut(s)	6, 86, 239, 292
PpsI	GAGTC	4 cut(s)	6, 86, 239, 292
PspFI	CCCAGC	1 cut(s)	458
PspN4I	GGNNCC	4 cut(s)	691, 708, 847, 943
PspPI	GGNCC	3 cut(s)	600, 845, 890
PvuII	CAGCTG	1 cut(s)	554
RsaI	GTAC	2 cut(s)	776, 935
RsaNI	GTAC	2 cut(s)	775, 934
SaqAI	TTAA	2 cut(s)	198, 804
SatI	GCNGC	3 cut(s)	336, 555, 615
Sau3AI	GATC	5 cut(s)	118, 175, 595, 745, 1021
Sau96I	GGNCC	3 cut(s)	600, 845, 890
SchI	GAGTC	4 cut(s)	6, 86, 240, 293
ScrFI	CCNGG	4 cut(s)	503, 578, 720, 851
SduI	GDGCHC	1 cut(s)	994
SfaNI	GCATC	3 cut(s)	10, 264, 557
SfcI	CTRYAG	1 cut(s)	798
SinI	GGWCC	2 cut(s)	845, 890
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
SpeI	ACTAGT	1 cut(s)	662
Sse9I	AATT	6 cut(s)	83, 536, 563, 568, 881, 918
SsiI	CCGC	3 cut(s)	288, 336, 344
SspMI	CTAG	4 cut(s)	491, 663, 855, 1045
StyD4I	CCNGG	4 cut(s)	501, 576, 718, 849
StyI	CCWWGG	3 cut(s)	250, 603, 937
TaaI	ACNGT	1 cut(s)	706
TaqI	TCGA	4 cut(s)	174, 318, 527, 682
TaqII	GACCGA	2 cut(s)	833, 967
TasI	AATT	6 cut(s)	83, 536, 563, 568, 881, 918
TauI	GCSGC	1 cut(s)	338
TfiI	GAWTC	2 cut(s)	158, 626
Tru1I	TTAA	2 cut(s)	198, 804
Tru9I	TTAA	2 cut(s)	198, 804
TseFI	GTSAC	2 cut(s)	241, 700
TseI	GCWGC	2 cut(s)	554, 614
Tsp45I	GTSAC	2 cut(s)	241, 700
TspDTI	ATGAA	5 cut(s)	96, 461, 779, 963, 993
TspGWI	ACGGA	1 cut(s)	638
Vha464I	CTTAAG	1 cut(s)	197
VpaK11BI	GGWCC	2 cut(s)	845, 890
XapI	RAATTY	2 cut(s)	536, 568
XceI	RCATGY	1 cut(s)	219
XmiI	GTMKAC	1 cut(s)	153
XspI	CTAG	4 cut(s)	491, 663, 855, 1045
Zsp2I	ATGCAT	2 cut(s)	103, 217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.