Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001397

Physical Location & Seq

Genomic Coordinates Forward (+)

19955685 .. 19959852

Gene Structure 4168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGAGGTTTCTGTTGAGCTCTCAGCTCCTCCTGCTTGGAAGAAGAAGGGGTAATATTGACATGGGGCAGAATTTTTTGCCCAAGAAGGGAGGCACACCAAGGAAAAATGAGATCATATTCATTTCTCCGACAGGAGAGGAGTTTAATAGTAAAAAACAATTGGAGAAATACCTAAAAGCCCATCCTGGTAACCCCGCAATATCGGAGTTTGATTGGAGCACTGGTGAAACCCCTAGGAGATCAGCTAGGATCAGTGAAAAGGTCAAGGTTGCTCCATCACCAGAGAGCGAGCCTCCAAAAAAGAGAGGCCGAAAATCATCAGGTTCAAAGGACAAAGTGGAAGCTTCCGGTGGAGAAGCTGATGCTACAAATGAAATTCAAATGAAGGATGCAGAGGTAGATGAGAAGAAAGATGCAGAATGTGAGAAACAGAAGGATGCAGAAGCTGAGAAAGAGAAAGATGCTTCGAAGGAAAATCAGGTTGGCAATGGAGGAAAAACTGAGGAAGAAACTGACCAGACTAAGCCAGGGGATGGTAAGGATAAGACCCCGACTGATGCTAAGGAAACTCTAGGTGAGGAGAAAAAGGAAGATGCAGTAGAGGAAAAACCTGCAGAGGAAGCAGCTGAAAACAACAAAGAAGATGTACCGCAAGCTGAGGGAGGACAAGCAGATGGAACTAGTGACAAGAAACAGGATGACACAGCTACTGTGACTGTTGAAGCAAATGGGGCAGCAGAGAAAGAGAATCTGGATGGAACCGCACCTTCTATGGACGGAGAGATCAAAATGAAACACGATGCAGCAGAGAACGATGGGAAATGCAATGCTCAAGCTGAAGAGAAAGTCAAGCCCAAAGATGGGGAGGTTGTTGAAAATGGTAAGGTTGAGCAAGTGGCGCAAGCGGATGCCCCTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008327 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

307

Amino Acids

33.14

Weight (kDa)

4.84

Isoelectric Point (pI)

38.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBD	PF01429	26 - 79	5e-12	Methyl-CpG binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15790 AT3G15790 AT3G15790
fragaria_vesca	FvH4_1g03020 FvH4_1g03020 FvH4_1g03020 FvH4_1g03020 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820
malus_domestica	MD00G1123000.v1.1 MD02G1029600.v1.1 MD15G1171000.v1.1 MD17G1210700.v1.1
prunus_persica	Prupe.3G086000_v2.0.a1 Prupe.7G245300_v2.0.a1
pyrus_communis	pycom02g02450 pycom09g14100 pycom15g15250 pycom17g21570
rosa_chinensis	RchiOBHm_Chr2g0088151 RchiOBHm_Chr2g0135641
rosa_laevigata	RLG00000015926 RLG00000019474
rosa_multiflora	Rmu_co8260895.1_g000001 Rmu_sc0002398.1_g000036 Rmu_sc0003275.1_g000050
rosa_roxburghii	Rroxscaffold_2G00109020 Rroxscaffold_2G00152920 Rroxscaffold_6G00395860 Rroxscaffold_7G00180210
rosa_rugosa	Rorug01G0481300 Rorug02G0325200
rosa_samantha	Rh2AG036300 Rh2AG376800 Rh2BG035500 Rh2BG076400 Rh2BG383100 Rh2CG036700 Rh2CG078600 Rh2CG362500 Rh2DG036000 Rh2DG399200 Rh5DG523600
rosa_wichuraiana	Rw1G013660 Rw2G002860 Rw2G030730 Rw4G021240 Rw4G021900 Rw7G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	619
AccB7I	CCANNNNNTGG	1 cut(s)	533
AciI	CCGC	4 cut(s)	195, 650, 762, 905
AclWI	GGATC	1 cut(s)	257
AcsI	RAATTY	2 cut(s)	70, 375
AcuI	CTGAAG	1 cut(s)	858
AfaI	GTAC	1 cut(s)	648
AfiI	CCNNNNNNNGG	4 cut(s)	86, 533, 860, 861
AgsI	TTSAA	4 cut(s)	327, 380, 722, 875
AhlI	ACTAGT	1 cut(s)	680
AjnI	CCWGG	2 cut(s)	184, 526
AjuI	GAANNNNNNNTTGG	2 cut(s)	465, 497
Alw21I	GWGCWC	2 cut(s)	20, 221
AlwI	GGATC	1 cut(s)	257
AlwNI	CAGNNNCTG	2 cut(s)	446, 710
AoxI	GGCC	1 cut(s)	307
ApeKI	GCWGC	3 cut(s)	623, 734, 803
ApoI	RAATTY	2 cut(s)	70, 375
AspA2I	CCTAGG	1 cut(s)	233
AspLEI	GCGC	1 cut(s)	901
AsuHPI	GGTGA	3 cut(s)	236, 270, 587
AsuII	TTCGAA	1 cut(s)	467
AvrII	CCTAGG	1 cut(s)	233
BanII	GRGCYC	1 cut(s)	20
Bbv12I	GWGCWC	2 cut(s)	20, 221
BbvCI	CCTCAGC	1 cut(s)	657
BbvI	GCAGC	3 cut(s)	635, 746, 815
BccI	CCATC	7 cut(s)	189, 283, 527, 668, 749, 809, 854
BciT130I	CCWGG	2 cut(s)	186, 528
BcuI	ACTAGT	1 cut(s)	680
BfaI	CTAG	4 cut(s)	234, 246, 572, 681
BfmI	CTRYAG	1 cut(s)	612
BfuAI	ACCTGC	1 cut(s)	619
BisI	GCNGC	3 cut(s)	624, 735, 804
BlnI	CCTAGG	1 cut(s)	233
BlsI	GCNGC	3 cut(s)	625, 736, 805
Bme1390I	CCNGG	2 cut(s)	186, 528
BmiI	GGNNCC	1 cut(s)	760
BmrFI	CCNGG	2 cut(s)	186, 528
BmsI	GCATC	9 cut(s)	352, 379, 403, 427, 451, 547, 583, 790, 898
BplI	GAGNNNNNCTC	2 cut(s)	277, 309
Bpu10I	CCTNAGC	2 cut(s)	561, 657
Bpu14I	TTCGAA	1 cut(s)	467
BpuEI	CTTGAG	1 cut(s)	816
BsaJI	CCNNGG	3 cut(s)	98, 233, 527
BsaWI	WCCGGW	1 cut(s)	347
BsaXI	ACNNNNNCTCC	2 cut(s)	208, 238
Bsc4I	CCNNNNNNNGG	4 cut(s)	86, 533, 860, 861
Bse1I	ACTGG	1 cut(s)	226
Bse3DI	GCAATG	2 cut(s)	493, 832
BseBI	CCWGG	2 cut(s)	186, 528
BseDI	CCNNGG	3 cut(s)	98, 233, 527
BseGI	GGATG	7 cut(s)	181, 394, 442, 538, 703, 760, 913
BseLI	CCNNNNNNNGG	4 cut(s)	86, 533, 860, 861
BseMI	GCAATG	2 cut(s)	493, 832
BseMII	CTCAG	4 cut(s)	35, 438, 492, 648
BseNI	ACTGG	1 cut(s)	226
BseRI	GAGGAG	3 cut(s)	17, 152, 593
BseXI	GCAGC	3 cut(s)	635, 746, 815
BshFI	GGCC	1 cut(s)	309
BsiHKAI	GWGCWC	2 cut(s)	20, 221
BsiSI	CCGG	1 cut(s)	348
BslI	CCNNNNNNNGG	4 cut(s)	86, 533, 860, 861
BsnI	GGCC	1 cut(s)	309
Bsp119I	TTCGAA	1 cut(s)	467
Bsp1286I	GDGCHC	2 cut(s)	20, 221
Bsp143I	GATC	4 cut(s)	111, 239, 249, 783
BspACI	CCGC	4 cut(s)	195, 650, 762, 905
BspANI	GGCC	1 cut(s)	309
BspCNI	CTCAG	4 cut(s)	34, 439, 493, 649
BspLI	GGNNCC	1 cut(s)	760
BspMAI	CTGCAG	1 cut(s)	616
BspMI	ACCTGC	1 cut(s)	619
BspPI	GGATC	1 cut(s)	257
BspT104I	TTCGAA	1 cut(s)	467
BsrDI	GCAATG	2 cut(s)	493, 832
BsrI	ACTGG	1 cut(s)	226
BssECI	CCNNGG	3 cut(s)	98, 233, 527
BssMI	GATC	4 cut(s)	111, 239, 249, 783
BssT1I	CCWWGG	2 cut(s)	98, 233
Bst2UI	CCWGG	2 cut(s)	186, 528
Bst4CI	ACNGT	2 cut(s)	712, 718
Bst6I	CTCTTC	1 cut(s)	834
BstBI	TTCGAA	1 cut(s)	467
BstC8I	GCNNGC	3 cut(s)	290, 654, 903
BstDEI	CTNAG	6 cut(s)	21, 447, 501, 522, 561, 657
BstEII	GGTNACC	1 cut(s)	188
BstF5I	GGATG	7 cut(s)	181, 394, 442, 538, 703, 760, 913
BstHHI	GCGC	1 cut(s)	901
BstKTI	GATC	4 cut(s)	114, 242, 252, 786
BstMBI	GATC	4 cut(s)	111, 239, 249, 783
BstMWI	GCNNNNNNNGC	4 cut(s)	31, 620, 731, 898
BstNI	CCWGG	2 cut(s)	186, 528
BstPI	GGTNACC	1 cut(s)	188
BstSCI	CCNGG	2 cut(s)	184, 526
BstSFI	CTRYAG	1 cut(s)	612
BstV1I	GCAGC	3 cut(s)	635, 746, 815
BsuRI	GGCC	1 cut(s)	309
BtsCI	GGATG	7 cut(s)	181, 394, 442, 538, 703, 760, 913
BtsIMutI	CAGTG	2 cut(s)	219, 259
BveI	ACCTGC	1 cut(s)	619
Cac8I	GCNNGC	3 cut(s)	290, 654, 903
CaiI	CAGNNNCTG	2 cut(s)	446, 710
CfoI	GCGC	1 cut(s)	901
Csp6I	GTAC	1 cut(s)	647
CviAII	CATG	1 cut(s)	61
CviQI	GTAC	1 cut(s)	647
DdeI	CTNAG	6 cut(s)	21, 447, 501, 522, 561, 657
DpnI	GATC	4 cut(s)	113, 241, 251, 785
DpnII	GATC	4 cut(s)	111, 239, 249, 783
Eam1104I	CTCTTC	1 cut(s)	834
EarI	CTCTTC	1 cut(s)	834
Ecl136II	GAGCTC	1 cut(s)	18
Eco130I	CCWWGG	2 cut(s)	98, 233
Eco24I	GRGCYC	1 cut(s)	20
Eco53kI	GAGCTC	1 cut(s)	18
Eco57I	CTGAAG	1 cut(s)	858
Eco91I	GGTNACC	1 cut(s)	188
EcoICRI	GAGCTC	1 cut(s)	18
EcoO65I	GGTNACC	1 cut(s)	188
EcoRII	CCWGG	2 cut(s)	184, 526
EcoT14I	CCWWGG	2 cut(s)	98, 233
EcoT38I	GRGCYC	1 cut(s)	20
ErhI	CCWWGG	2 cut(s)	98, 233
FaeI	CATG	1 cut(s)	64
FaiI	YATR	4 cut(s)	62, 116, 773, 919
FatI	CATG	1 cut(s)	60
FauI	CCCGC	1 cut(s)	202
Fnu4HI	GCNGC	3 cut(s)	624, 735, 804
FokI	GGATG	6 cut(s)	168, 401, 449, 545, 710, 767
FriOI	GRGCYC	1 cut(s)	20
Fsp4HI	GCNGC	3 cut(s)	624, 735, 804
FspBI	CTAG	4 cut(s)	234, 246, 572, 681
GlaI	GCGC	1 cut(s)	900
GluI	GCNGC	3 cut(s)	624, 735, 804
HaeIII	GGCC	1 cut(s)	309
HapII	CCGG	1 cut(s)	348
HhaI	GCGC	1 cut(s)	901
Hin1II	CATG	1 cut(s)	64
Hin6I	GCGC	1 cut(s)	899
HinP1I	GCGC	1 cut(s)	899
HindIII	AAGCTT	1 cut(s)	342
HinfI	GANTC	1 cut(s)	748
HpaII	CCGG	1 cut(s)	348
HphI	GGTGA	3 cut(s)	236, 270, 587
Hpy188I	TCNGA	2 cut(s)	129, 205
Hpy188III	TCNNGA	1 cut(s)	752
HpyAV	CCTTC	6 cut(s)	39, 79, 379, 427, 463, 777
HpyCH4III	ACNGT	2 cut(s)	712, 718
HpyCH4V	TGCA	7 cut(s)	392, 416, 440, 596, 614, 803, 825
HpyF10VI	GCNNNNNNNGC	4 cut(s)	31, 620, 731, 898
HpyF3I	CTNAG	6 cut(s)	21, 447, 501, 522, 561, 657
Hsp92II	CATG	1 cut(s)	64
HspAI	GCGC	1 cut(s)	899
Kzo9I	GATC	4 cut(s)	111, 239, 249, 783
LmnI	GCTCC	3 cut(s)	30, 216, 277
Lsp1109I	GCAGC	3 cut(s)	635, 746, 815
LweI	GCATC	9 cut(s)	352, 379, 403, 427, 451, 547, 583, 790, 898
MaeI	CTAG	4 cut(s)	234, 246, 572, 681
MaeIII	GTNAC	3 cut(s)	188, 683, 712
MalI	GATC	4 cut(s)	113, 241, 251, 785
MboI	GATC	4 cut(s)	111, 239, 249, 783
MboII	GAAGA	7 cut(s)	51, 54, 418, 518, 602, 653, 851
MfeI	CAATTG	1 cut(s)	158
MhlI	GDGCHC	2 cut(s)	20, 221
MluCI	AATT	3 cut(s)	70, 158, 375
MmeI	TCCRAC	1 cut(s)	152
MseI	TTAA	1 cut(s)	144
MspA1I	CMGCKG	1 cut(s)	626
MspI	CCGG	1 cut(s)	348
MspR9I	CCNGG	2 cut(s)	186, 528
MunI	CAATTG	1 cut(s)	158
MvaI	CCWGG	2 cut(s)	186, 528
MwoI	GCNNNNNNNGC	4 cut(s)	31, 620, 731, 898
NdeII	GATC	4 cut(s)	111, 239, 249, 783
NlaIII	CATG	1 cut(s)	64
NlaIV	GGNNCC	1 cut(s)	760
NmuCI	GTSAC	2 cut(s)	683, 712
NspV	TTCGAA	1 cut(s)	467
PfeI	GAWTC	1 cut(s)	748
PflMI	CCANNNNNTGG	1 cut(s)	533
PkrI	GCNGC	3 cut(s)	625, 736, 805
Psp124BI	GAGCTC	1 cut(s)	20
Psp6I	CCWGG	2 cut(s)	184, 526
PspEI	GGTNACC	1 cut(s)	188
PspGI	CCWGG	2 cut(s)	184, 526
PspN4I	GGNNCC	1 cut(s)	760
PstI	CTGCAG	1 cut(s)	616
PstNI	CAGNNNCTG	2 cut(s)	446, 710
PvuII	CAGCTG	1 cut(s)	626
RsaI	GTAC	1 cut(s)	648
RsaNI	GTAC	1 cut(s)	647
SacI	GAGCTC	1 cut(s)	20
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	3 cut(s)	624, 735, 804
Sau3AI	GATC	4 cut(s)	111, 239, 249, 783
ScrFI	CCNGG	2 cut(s)	186, 528
SduI	GDGCHC	2 cut(s)	20, 221
SfaNI	GCATC	9 cut(s)	352, 379, 403, 427, 451, 547, 583, 790, 898
SfcI	CTRYAG	1 cut(s)	612
SfuI	TTCGAA	1 cut(s)	467
SmlI	CTYRAG	1 cut(s)	831
SmoI	CTYRAG	1 cut(s)	831
SpeI	ACTAGT	1 cut(s)	680
Sse9I	AATT	3 cut(s)	70, 158, 375
SsiI	CCGC	4 cut(s)	195, 650, 762, 905
SspI	AATATT	1 cut(s)	55
SspMI	CTAG	4 cut(s)	234, 246, 572, 681
SstI	GAGCTC	1 cut(s)	20
StyD4I	CCNGG	2 cut(s)	184, 526
StyI	CCWWGG	2 cut(s)	98, 233
TaaI	ACNGT	2 cut(s)	712, 718
TaqI	TCGA	1 cut(s)	467
TasI	AATT	3 cut(s)	70, 158, 375
TfiI	GAWTC	1 cut(s)	748
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TscAI	CASTG	2 cut(s)	226, 259
TseFI	GTSAC	2 cut(s)	683, 712
TseI	GCWGC	3 cut(s)	623, 734, 803
Tsp45I	GTSAC	2 cut(s)	683, 712
TspDTI	ATGAA	4 cut(s)	109, 387, 398, 806
TspGWI	ACGGA	1 cut(s)	792
TspRI	CASTG	2 cut(s)	226, 259
Van91I	CCANNNNNTGG	1 cut(s)	533
XapI	RAATTY	2 cut(s)	70, 375
XmaJI	CCTAGG	1 cut(s)	233
XspI	CTAG	4 cut(s)	234, 246, 572, 681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.