pycom17g24280

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0003387
Physical Location & Seq
Reverse (-)
22596735 .. 22597764
1030 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 675 bp
ATGGCCGGAGCAATGGTTAGAATTCCGGTGATTCGCCGGAGCTCCGACGATATTTTTGAATTTCCCGGTACAACTGTAAGTCTAGCCGACATGGTTCTGGGTTTCATTGAGGAAGTCGAGGTGTCGCCGGAGAATACTACCTCTGGCTCCGATGAAGATGACGAGAATTCTTGCAGTGTGGAAGAGAACAAGGCATTTTGGGAAGAACAAGACCAACTTCTGCAGGCAATATTGTGCAAGACCAGTAGTGTTGAATCGAAAATTCGACAAGCCACCAAGGAAGCATTAAGGGAAATAAATTCATCAAGCGCAGAATATTGCGTTTGCGTGAGACCTGTGGCCGGAGGTTGCCGGAAATGTTTGCGTACCGAAATATGCAAACGGCTAATTGATTCTGGATACAATTGTGCCATTTGCAAGTCTAAGCGGAGAAGCTCAACAAATGCCCCAGCAGGGGAGCATACTTATTTGGAAGTGCTGGACAAAAGTTCAAAGAGAGGGGAGATTAGAGTTGTAATTGAGCTAAATTTCCGAGCTGAGTTCGAGATGGCAAGAGCTAGCGAAAACTACAACAGATTGATTAGCTGGTTGCCTGAAGTGTTTGTTGGAAAAGCCGATAGACTACGAGCTTTTGATCGATCAAGATTTTGTGCTGCGCTGCAAAAACATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

225

Amino Acids

25.16

Weight (kDa)

5.65

Isoelectric Point (pI)

62.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 30 - 211 2.4e-50 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 427
AcoI YGGCCR 2 cut(s) 3, 339
AcsI RAATTY 6 cut(s) 21, 59, 166, 261, 298, 526
AcuI CTGAAG 1 cut(s) 615
AfaI GTAC 2 cut(s) 70, 367
AfiI CCNNNNNNNGG 3 cut(s) 341, 453, 454
AflIII ACRYGT 1 cut(s) 667
AgsI TTSAA 3 cut(s) 59, 254, 492
AjuI GAANNNNNNNTTGG 2 cut(s) 588, 620
AluBI AGCT 7 cut(s) 42, 435, 523, 536, 557, 585, 629
AluI AGCT 7 cut(s) 42, 435, 523, 536, 557, 585, 629
Alw21I GWGCWC 1 cut(s) 44
Alw26I GTCTC 1 cut(s) 325
AoxI GGCC 2 cut(s) 3, 339
ApeKI GCWGC 2 cut(s) 653, 658
ApoI RAATTY 6 cut(s) 21, 59, 166, 261, 298, 526
ArsI GACNNNNNNTTYG 2 cut(s) 38, 70
AspLEI GCGC 2 cut(s) 311, 658
AsuC2I CCSGG 1 cut(s) 66
AsuHPI GGTGA 1 cut(s) 40
AsuNHI GCTAGC 1 cut(s) 557
BaeI ACNNNNGTAYC 4 cut(s) 60, 93, 391, 424
BanII GRGCYC 1 cut(s) 44
Bbv12I GWGCWC 1 cut(s) 44
BbvI GCAGC 2 cut(s) 640, 645
BccI CCATC 1 cut(s) 541
BceAI ACGGC 1 cut(s) 398
BciVI GTATCC 1 cut(s) 392
BcnI CCSGG 1 cut(s) 66
BcoDI GTCTC 1 cut(s) 325
BfaI CTAG 2 cut(s) 83, 558
BfmI CTRYAG 1 cut(s) 221
BfuI GTATCC 1 cut(s) 392
BisI GCNGC 2 cut(s) 654, 659
BlsI GCNGC 2 cut(s) 655, 660
Bme1390I CCNGG 1 cut(s) 66
BmiI GGNNCC 1 cut(s) 148
BmrFI CCNGG 1 cut(s) 66
BmtI GCTAGC 1 cut(s) 561
BpuMI CCSGG 1 cut(s) 66
Bsa29I ATCGAT 1 cut(s) 637
BsaI GGTCTC 1 cut(s) 325
BsaJI CCNNGG 1 cut(s) 276
BsaWI WCCGGW 1 cut(s) 25
BsaXI ACNNNNNCTCC 1 cut(s) 30
Bsc4I CCNNNNNNNGG 3 cut(s) 341, 453, 454
Bse1I ACTGG 1 cut(s) 243
Bse3DI GCAATG 1 cut(s) 18
BseCI ATCGAT 1 cut(s) 637
BseDI CCNNGG 1 cut(s) 276
BseLI CCNNNNNNNGG 3 cut(s) 341, 453, 454
BseMI GCAATG 1 cut(s) 18
BseMII CTCAG 1 cut(s) 528
BseNI ACTGG 1 cut(s) 243
BseXI GCAGC 2 cut(s) 640, 645
BseYI CCCAGC 1 cut(s) 448
BshFI GGCC 2 cut(s) 5, 341
BshVI ATCGAT 1 cut(s) 637
BsiHKAI GWGCWC 1 cut(s) 44
BsiSI CCGG 7 cut(s) 6, 26, 37, 66, 128, 342, 352
BslI CCNNNNNNNGG 3 cut(s) 341, 453, 454
BsmAI GTCTC 1 cut(s) 325
BsnI GGCC 2 cut(s) 5, 341
Bso31I GGTCTC 1 cut(s) 325
Bsp1286I GDGCHC 1 cut(s) 44
Bsp143I GATC 2 cut(s) 634, 638
BspACI CCGC 1 cut(s) 427
BspANI GGCC 2 cut(s) 5, 341
BspCNI CTCAG 1 cut(s) 529
BspDI ATCGAT 1 cut(s) 637
BspLI GGNNCC 1 cut(s) 148
BspMAI CTGCAG 1 cut(s) 225
BspOI GCTAGC 1 cut(s) 561
BspTNI GGTCTC 1 cut(s) 325
BsrDI GCAATG 1 cut(s) 18
BsrI ACTGG 1 cut(s) 243
BssECI CCNNGG 1 cut(s) 276
BssMI GATC 2 cut(s) 634, 638
BssT1I CCWWGG 1 cut(s) 276
Bst4CI ACNGT 1 cut(s) 76
Bst6I CTCTTC 1 cut(s) 177
BstC8I GCNNGC 2 cut(s) 225, 559
BstDEI CTNAG 2 cut(s) 423, 537
BstHHI GCGC 2 cut(s) 311, 658
BstKTI GATC 2 cut(s) 637, 641
BstMAI GTCTC 1 cut(s) 325
BstMBI GATC 2 cut(s) 634, 638
BstNSI RCATGY 1 cut(s) 671
BstSCI CCNGG 1 cut(s) 64
BstSFI CTRYAG 1 cut(s) 221
BstV1I GCAGC 2 cut(s) 640, 645
Bsu15I ATCGAT 1 cut(s) 637
BsuI GTATCC 1 cut(s) 392
BsuRI GGCC 2 cut(s) 5, 341
BsuTUI ATCGAT 1 cut(s) 637
BtsI GCAGTG 1 cut(s) 181
BtsIMutI CAGTG 1 cut(s) 181
Cac8I GCNNGC 2 cut(s) 225, 559
CfoI GCGC 2 cut(s) 311, 658
ClaI ATCGAT 1 cut(s) 637
Csp6I GTAC 2 cut(s) 69, 366
CviAII CATG 2 cut(s) 91, 668
CviQI GTAC 2 cut(s) 69, 366
DdeI CTNAG 2 cut(s) 423, 537
DpnI GATC 2 cut(s) 636, 640
DpnII GATC 2 cut(s) 634, 638
EaeI YGGCCR 2 cut(s) 3, 339
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
Ecl136II GAGCTC 1 cut(s) 42
Eco130I CCWWGG 1 cut(s) 276
Eco24I GRGCYC 1 cut(s) 44
Eco31I GGTCTC 1 cut(s) 325
Eco53kI GAGCTC 1 cut(s) 42
Eco57I CTGAAG 1 cut(s) 615
EcoICRI GAGCTC 1 cut(s) 42
EcoRI GAATTC 2 cut(s) 21, 166
EcoT14I CCWWGG 1 cut(s) 276
EcoT38I GRGCYC 1 cut(s) 44
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 2 cut(s) 94, 671
FaiI YATR 5 cut(s) 92, 376, 462, 669, 673
FalI AAGNNNNNCTT 2 cut(s) 201, 233
FatI CATG 2 cut(s) 90, 667
Fnu4HI GCNGC 2 cut(s) 654, 659
FriOI GRGCYC 1 cut(s) 44
Fsp4HI GCNGC 2 cut(s) 654, 659
FspBI CTAG 2 cut(s) 83, 558
GlaI GCGC 2 cut(s) 310, 657
GluI GCNGC 2 cut(s) 654, 659
GsaI CCCAGC 1 cut(s) 452
HaeIII GGCC 2 cut(s) 5, 341
HapII CCGG 7 cut(s) 6, 26, 37, 66, 128, 342, 352
HhaI GCGC 2 cut(s) 311, 658
Hin1II CATG 2 cut(s) 94, 671
Hin6I GCGC 2 cut(s) 309, 656
HinP1I GCGC 2 cut(s) 309, 656
HinfI GANTC 3 cut(s) 31, 254, 392
HpaII CCGG 7 cut(s) 6, 26, 37, 66, 128, 342, 352
HphI GGTGA 1 cut(s) 40
Hpy188I TCNGA 3 cut(s) 46, 151, 533
Hpy188III TCNNGA 3 cut(s) 396, 544, 642
Hpy99I CGWCG 1 cut(s) 50
HpyCH4III ACNGT 1 cut(s) 76
HpyCH4V TGCA 6 cut(s) 174, 223, 237, 378, 417, 661
HpyF3I CTNAG 2 cut(s) 423, 537
Hsp92II CATG 2 cut(s) 94, 671
HspAI GCGC 2 cut(s) 309, 656
Kzo9I GATC 2 cut(s) 634, 638
LmnI GCTCC 5 cut(s) 8, 39, 47, 152, 457
Lsp1109I GCAGC 2 cut(s) 640, 645
MaeI CTAG 2 cut(s) 83, 558
MalI GATC 2 cut(s) 636, 640
MboI GATC 2 cut(s) 634, 638
MboII GAAGA 3 cut(s) 167, 194, 215
MfeI CAATTG 1 cut(s) 403
MhlI GDGCHC 1 cut(s) 44
MluCI AATT 9 cut(s) 21, 59, 166, 261, 298, 387, 403, 516, 526
MmeI TCCRAC 2 cut(s) 69, 586
MnlI CCTC 5 cut(s) 103, 112, 151, 338, 491
MseI TTAA 1 cut(s) 287
MspI CCGG 7 cut(s) 6, 26, 37, 66, 128, 342, 352
MspR9I CCNGG 1 cut(s) 66
MunI CAATTG 1 cut(s) 403
NciI CCSGG 1 cut(s) 66
NdeII GATC 2 cut(s) 634, 638
NheI GCTAGC 1 cut(s) 557
NlaIII CATG 2 cut(s) 94, 671
NlaIV GGNNCC 1 cut(s) 148
NspI RCATGY 1 cut(s) 671
PciI ACATGT 1 cut(s) 667
PfeI GAWTC 3 cut(s) 31, 254, 392
PkrI GCNGC 2 cut(s) 655, 660
PscI ACATGT 1 cut(s) 667
Psp124BI GAGCTC 1 cut(s) 44
PspFI CCCAGC 1 cut(s) 448
PspN4I GGNNCC 1 cut(s) 148
PstI CTGCAG 1 cut(s) 225
RsaI GTAC 2 cut(s) 70, 367
RsaNI GTAC 2 cut(s) 69, 366
SacI GAGCTC 1 cut(s) 44
SaqAI TTAA 1 cut(s) 287
SatI GCNGC 2 cut(s) 654, 659
Sau3AI GATC 2 cut(s) 634, 638
ScrFI CCNGG 1 cut(s) 66
SduI GDGCHC 1 cut(s) 44
SfcI CTRYAG 1 cut(s) 221
Sse9I AATT 9 cut(s) 21, 59, 166, 261, 298, 387, 403, 516, 526
SsiI CCGC 1 cut(s) 427
SspI AATATT 2 cut(s) 231, 317
SspMI CTAG 2 cut(s) 83, 558
SstI GAGCTC 1 cut(s) 44
StyD4I CCNGG 1 cut(s) 64
StyI CCWWGG 1 cut(s) 276
TaaI ACNGT 1 cut(s) 76
TaqI TCGA 5 cut(s) 117, 257, 265, 543, 637
TasI AATT 9 cut(s) 21, 59, 166, 261, 298, 387, 403, 516, 526
TfiI GAWTC 3 cut(s) 31, 254, 392
Tru1I TTAA 1 cut(s) 287
Tru9I TTAA 1 cut(s) 287
TscAI CASTG 1 cut(s) 181
TseI GCWGC 2 cut(s) 653, 658
TspDTI ATGAA 3 cut(s) 94, 168, 291
TspRI CASTG 1 cut(s) 181
XapI RAATTY 6 cut(s) 21, 59, 166, 261, 298, 526
XceI RCATGY 1 cut(s) 671
XspI CTAG 2 cut(s) 83, 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.